RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 PRR15LQ9BU68 103 aa1.18□□□□□ -2.22
NUP54-215ENST00000514313 IFT140Q96RY7 1462 aa1.18□□□□□ -2.22
NUP54-215ENST00000514313 ACYP2P14621 99 aa1.17□□□□□ -2.22
NUP54-215ENST00000514313 NAA60Q9H7X0 242 aa1.17□□□□□ -2.22
NUP54-215ENST00000514313 TNS1Q9HBL0 1735 aaKnown RBP1.17□□□□□ -2.22
NUP54-215ENST00000514313 PARP14Q460N5 1801 aa1.17□□□□□ -2.22
NUP54-215ENST00000514313 MYH9P35579 1960 aaKnown RBP1.16□□□□□ -2.22
NUP54-215ENST00000514313 APOC4-APOC2K7ER74 178 aa1.16□□□□□ -2.22
NUP54-215ENST00000514313 Q6AWC8 147 aa1.16□□□□□ -2.22
NUP54-215ENST00000514313 Q8N8P6 123 aa1.16□□□□□ -2.22
NUP54-215ENST00000514313 ARFGEF1Q9Y6D6 1849 aa1.16□□□□□ -2.22
NUP54-215ENST00000514313 ROCK2O75116 1388 aaKnown RBP1.16□□□□□ -2.22
NUP54-215ENST00000514313 MBD5Q9P267 1494 aa1.16□□□□□ -2.22
NUP54-215ENST00000514313 F5P12259 2224 aa1.16□□□□□ -2.22
NUP54-215ENST00000514313 CDK13Q14004 1512 aaKnown RBP1.15□□□□□ -2.22
NUP54-215ENST00000514313 MYH7P12883 1935 aa1.15□□□□□ -2.22
NUP54-215ENST00000514313 A0A1B0GV90 55 aa1.15□□□□□ -2.23
NUP54-215ENST00000514313 BTG2P78543 158 aa1.15□□□□□ -2.23
NUP54-215ENST00000514313 HCG22E2RYF7 251 aa1.14□□□□□ -2.23
NUP54-215ENST00000514313 FGF7P21781 194 aa1.14□□□□□ -2.23
NUP54-215ENST00000514313 KRTAP2-3P0C7H8 128 aa1.13□□□□□ -2.23
NUP54-215ENST00000514313 INSL4Q14641 139 aa1.13□□□□□ -2.23
NUP54-215ENST00000514313 VMO1Q7Z5L0 202 aa1.13□□□□□ -2.23
NUP54-215ENST00000514313 WFDC6Q9BQY6 131 aa1.13□□□□□ -2.23
NUP54-215ENST00000514313 KRTAP2-4Q9BYR9 128 aa1.13□□□□□ -2.23
NUP54-215ENST00000514313 KRTAP2-1Q9BYU5 128 aa1.13□□□□□ -2.23
NUP54-215ENST00000514313 SIX6O95475 246 aa1.12□□□□□ -2.23
NUP54-215ENST00000514313 Q56UQ5 140 aa1.12□□□□□ -2.23
NUP54-215ENST00000514313 C12orf73Q69YU5 71 aa1.12□□□□□ -2.23
NUP54-215ENST00000514313 CASKIN1Q8WXD9 1431 aa1.12□□□□□ -2.23
NUP54-215ENST00000514313 FRAS1Q86XX4 4008 aa1.12□□□□□ -2.23
NUP54-215ENST00000514313 SSC5DA1L4H1 1573 aa1.12□□□□□ -2.23
NUP54-215ENST00000514313 SPAARA0A1B0GVQ0 90 aa1.11□□□□□ -2.23
NUP54-215ENST00000514313 NAIPQ13075 1403 aa1.11□□□□□ -2.23
NUP54-215ENST00000514313 TRAV13-2A0A0B4J235 113 aa1.1□□□□□ -2.23
NUP54-215ENST00000514313 PIGBOS1A0A0B4J2F0 54 aa1.1□□□□□ -2.23
NUP54-215ENST00000514313 DLEU1O43261 78 aa1.1□□□□□ -2.23
NUP54-215ENST00000514313 Q6ZRX8 168 aa1.1□□□□□ -2.23
NUP54-215ENST00000514313 SMR3AQ99954 134 aa1.1□□□□□ -2.23
NUP54-215ENST00000514313 DOCK11Q5JSL3 2073 aa1.09□□□□□ -2.23
NUP54-215ENST00000514313 TMEM14DPA8MWL7 114 aa1.09□□□□□ -2.23
NUP54-215ENST00000514313 PROK2Q9HC23 129 aa1.09□□□□□ -2.23
NUP54-215ENST00000514313 MEGF8Q7Z7M0 2845 aa1.08□□□□□ -2.24
NUP54-215ENST00000514313 AKAIN1P0CW23 69 aa1.08□□□□□ -2.24
NUP54-215ENST00000514313 MIF4GDA9UHW6 222 aaKnown RBP1.07□□□□□ -2.24
NUP54-215ENST00000514313 PP6455Q8WZ26 134 aa1.07□□□□□ -2.24
NUP54-215ENST00000514313 SCP2D1Q9UJQ7 156 aa1.07□□□□□ -2.24
NUP54-215ENST00000514313 KDM6BO15054 1643 aa1.07□□□□□ -2.24
NUP54-215ENST00000514313 KCPQ6ZWJ8 1503 aa1.06□□□□□ -2.24
NUP54-215ENST00000514313 SCN3BQ9NY72 215 aa1.06□□□□□ -2.24
NUP54-215ENST00000514313 TRAV1-2A0A0B4J238 106 aa1.05□□□□□ -2.24
NUP54-215ENST00000514313 APOC2P02655 101 aa1.04□□□□□ -2.24
NUP54-215ENST00000514313 CATR1Q13166 79 aa1.04□□□□□ -2.24
NUP54-215ENST00000514313 C10orf128Q5T292 105 aa1.04□□□□□ -2.24
NUP54-215ENST00000514313 ZMYM4Q5VZL5 1548 aa1.04□□□□□ -2.24
NUP54-215ENST00000514313 NMBP08949 121 aa1.03□□□□□ -2.24
NUP54-215ENST00000514313 PPP3R2Q96LZ3 170 aa1.03□□□□□ -2.24
NUP54-215ENST00000514313 AQP10Q96PS8 301 aa1.03□□□□□ -2.24
NUP54-215ENST00000514313 NAV3Q8IVL0 2385 aa1.03□□□□□ -2.25
NUP54-215ENST00000514313 GCHFRP30047 84 aa1.02□□□□□ -2.25
NUP54-215ENST00000514313 BCL9LQ86UU0 1499 aa1.02□□□□□ -2.25
NUP54-215ENST00000514313 NWD2Q9ULI1 1742 aa1.02□□□□□ -2.25
NUP54-215ENST00000514313 SIPA1L3O60292 1781 aaPredicted RBP1.01□□□□□ -2.25
NUP54-215ENST00000514313 LRRC37A3O60309 1634 aa1.01□□□□□ -2.25
NUP54-215ENST00000514313 KRTAP21-1Q3LI58 79 aa1.01□□□□□ -2.25
NUP54-215ENST00000514313 BAGE3Q86Y29 109 aa1.01□□□□□ -2.25
NUP54-215ENST00000514313 PPP1R17O96001 155 aa1□□□□□ -2.25
NUP54-215ENST00000514313 SMIM6P0DI80 62 aa1□□□□□ -2.25
NUP54-215ENST00000514313 TTC9CQ8N5M4 171 aa1□□□□□ -2.25
NUP54-215ENST00000514313 ARAP2Q8WZ64 1704 aa1□□□□□ -2.25
NUP54-215ENST00000514313 APCP25054 2843 aa1□□□□□ -2.25
NUP54-215ENST00000514313 TNCP24821 2201 aa1□□□□□ -2.25
NUP54-215ENST00000514313 JMJD1CQ15652 2540 aa0.99□□□□□ -2.25
NUP54-215ENST00000514313 GOLGA3Q08378 1498 aa0.99□□□□□ -2.25
NUP54-215ENST00000514313 G3V318 75 aa0.98□□□□□ -2.25
NUP54-215ENST00000514313 Q5VV11 94 aa0.98□□□□□ -2.25
NUP54-215ENST00000514313 SPINK6Q6UWN8 80 aa0.98□□□□□ -2.25
NUP54-215ENST00000514313 LAMC3Q9Y6N6 1575 aa0.98□□□□□ -2.25
NUP54-215ENST00000514313 TENM3Q9P273 2699 aa0.97□□□□□ -2.25
NUP54-215ENST00000514313 LINC00587B1AMM8 73 aa0.97□□□□□ -2.25
NUP54-215ENST00000514313 SNAPC5O75971 98 aa0.97□□□□□ -2.25
NUP54-215ENST00000514313 CCL18P55774 89 aa0.97□□□□□ -2.25
NUP54-215ENST00000514313 C2orf88Q9BSF0 95 aa0.97□□□□□ -2.25
NUP54-215ENST00000514313 IFNGP01579 166 aa0.96□□□□□ -2.26
NUP54-215ENST00000514313 MRPL54Q6P161 138 aaKnown RBP0.96□□□□□ -2.26
NUP54-215ENST00000514313 SPANXDQ9BXN6 97 aa0.96□□□□□ -2.26
NUP54-215ENST00000514313 PATJQ8NI35 1801 aa0.96□□□□□ -2.26
NUP54-215ENST00000514313 MYO7AQ13402 2215 aa0.96□□□□□ -2.26
NUP54-215ENST00000514313 DOCK1Q14185 1865 aa0.95□□□□□ -2.26
NUP54-215ENST00000514313 OOSP1A8MZH6 123 aa0.95□□□□□ -2.26
NUP54-215ENST00000514313 C8orf59Q8N0T1 100 aaPredicted RBP0.95□□□□□ -2.26
NUP54-215ENST00000514313 R4GMQ9 66 aa0.95□□□□□ -2.26
NUP54-215ENST00000514313 PPIP5K1Q6PFW1 1433 aa0.95□□□□□ -2.26
NUP54-215ENST00000514313 NALCNQ8IZF0 1738 aa0.95□□□□□ -2.26
NUP54-215ENST00000514313 AHNAK2Q8IVF2 5795 aa0.94□□□□□ -2.26
NUP54-215ENST00000514313 A2ML1A8K2U0 1454 aa0.94□□□□□ -2.26
NUP54-215ENST00000514313 PXDNQ92626 1479 aa0.94□□□□□ -2.26
NUP54-215ENST00000514313 TNFP01375 233 aa0.93□□□□□ -2.26
NUP54-215ENST00000514313 CADP27708 2225 aa0.93□□□□□ -2.26
NUP54-215ENST00000514313 CPSF1Q10570 1443 aaKnown RBP0.92□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms