RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 CRISP2P16562 243 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 S100A4P26447 101 aaKnown RBP2.36□□□□□ -2.03
NUP54-212ENST00000513248 ATP6V0CP27449 155 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 GCHFRP30047 84 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 SRIP30626 198 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 UBE2G2P60604 165 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 UBE2G1P62253 170 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 SERF2P84101 59 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 DAZ2Q13117 558 aaKnown RBP2.36□□□□□ -2.03
NUP54-212ENST00000513248 MRPL23Q16540 153 aaKnown RBP2.36□□□□□ -2.03
NUP54-212ENST00000513248 SMUG1Q53HV7 270 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 SAPCD1Q5SSQ6 148 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 PRR9Q5T870 116 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 RPL7L1Q6DKI1 246 aaKnown RBP2.36□□□□□ -2.03
NUP54-212ENST00000513248 NEGR1Q7Z3B1 354 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 C6orf223Q8N319 242 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 ZFAND2AQ8N6M9 145 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 OR4C5Q8NGB2 326 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 ASB13Q8WXK3 278 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 KCNS1Q96KK3 526 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 AQP10Q96PS8 301 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 TXNDC17Q9BRA2 123 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 LINC00467Q9BRT7 94 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 PSMG3Q9BT73 122 aaPredicted RBP2.36□□□□□ -2.03
NUP54-212ENST00000513248 SH3BGRL3Q9H299 93 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 PRO0255Q9UI72 69 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 TNFSF18Q9UNG2 199 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 HHLA3Q9XRX5 114 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 LINC00588Q9Y4M8 146 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 LENEPQ9Y5L5 61 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 DNAH9Q9NYC9 4486 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 LYSTQ99698 3801 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 TRAV8-1A0A0A6YYK1 113 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 IGHV3-73A0A0B4J1V6 119 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 CTXND1A0A1B0GTU2 59 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 A0A1B0GV50 99 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 KANTRA0A1W2PQU2 76 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 C16orf90A8MZG2 172 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 KRTAP4-16G5E9R7 235 aaPredicted RBP2.35□□□□□ -2.03
NUP54-212ENST00000513248 H3BNG1 76 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 M0R2P5 195 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 SIVA1O15304 175 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 GNRH2O43555 120 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 SPINK4O60575 86 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 ZNF324O75467 553 aaPredicted RBP2.35□□□□□ -2.03
NUP54-212ENST00000513248 GCGP01275 180 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 ORM1P02763 201 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 TCRAP04437 139 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 SFTA3P0C7M3 94 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 STAG3L2P0CL84 134 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 STAG3L3P0CL85 134 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 EVI2AP22794 236 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 ASIPP42127 132 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 HNRNPA3P51991 378 aaKnown RBP2.35□□□□□ -2.03
NUP54-212ENST00000513248 FGF8P55075 233 aaPredicted RBP2.35□□□□□ -2.03
NUP54-212ENST00000513248 EIF5AP63241 154 aaKnown RBP2.35□□□□□ -2.03
NUP54-212ENST00000513248 FLI1Q01543 452 aaPredicted RBP2.35□□□□□ -2.03
NUP54-212ENST00000513248 ESRGQ1W209 222 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 LGALSLQ3ZCW2 172 aaPredicted RBP2.35□□□□□ -2.03
NUP54-212ENST00000513248 Q6AWC8 147 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 Q6ZQT7 251 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 CYB561D1Q8N8Q1 229 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 C5orf17Q8NAS9 161 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 C11orf72Q8NBR9 251 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 ZNRF2Q8NHG8 242 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 FAM213BQ8TBF2 198 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 FAM19A4Q96LR4 140 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 PRADC1Q9BSG0 188 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 ZNF471Q9BX82 626 aaPredicted RBP2.35□□□□□ -2.03
NUP54-212ENST00000513248 DAZ3Q9NR90 486 aaKnown RBP2.35□□□□□ -2.03
NUP54-212ENST00000513248 EPDR1Q9UM22 224 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 PSG8Q9UQ74 426 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 MRPS16Q9Y3D3 137 aaKnown RBP2.35□□□□□ -2.03
NUP54-212ENST00000513248 CSMD3Q7Z407 3707 aa2.35□□□□□ -2.03
NUP54-212ENST00000513248 TMSB15BA0A087X1C1 80 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 TRAV8-6A0A0B4J262 113 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 TRAV4A0A0B4J268 109 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 MAP1LC3B2A6NCE7 125 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 FABP5P3A8MUU1 101 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 SMLR1H3BR10 107 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 TEX46H3BTG2 121 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 PEX7O00628 323 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 PSCAO43653 123 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 TYMSP04818 313 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 TPT1P13693 172 aaKnown RBP2.34□□□□□ -2.03
NUP54-212ENST00000513248 AKR1C3P42330 323 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 CRYBA4P53673 196 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 Q5BKY6 102 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 OR10J3Q5JRS4 329 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 KCNIP4Q6PIL6 250 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 ARL6IP6Q8N6S5 226 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 TMEM75Q8N9X5 138 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 SFT2D1Q8WV19 159 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 NKX6-2Q9C056 277 aaPredicted RBP2.34□□□□□ -2.03
NUP54-212ENST00000513248 MAP1LC3BQ9GZQ8 125 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 LY96Q9Y6Y9 160 aa2.34□□□□□ -2.03
NUP54-212ENST00000513248 HECTD4Q9Y4D8 3996 aa2.34□□□□□ -2.04
NUP54-212ENST00000513248 DNAH3Q8TD57 4116 aa2.34□□□□□ -2.04
NUP54-212ENST00000513248 A0A0D9SG52 128 aa2.33□□□□□ -2.04
NUP54-212ENST00000513248 A0A1W2PRE2 83 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms