RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 RASL11AQ6T310 242 aa20.48■□□□□ 0.87
LIMCH1-211ENST00000509638 SH2D6Q7Z4S9 175 aa20.48■□□□□ 0.87
LIMCH1-211ENST00000509638 GATD1Q8NB37 220 aa20.48■□□□□ 0.87
LIMCH1-211ENST00000509638 RAB4AP20338 218 aa20.47■□□□□ 0.87
LIMCH1-211ENST00000509638 UBE2DNLQ8IWF7 75 aa20.47■□□□□ 0.87
LIMCH1-211ENST00000509638 ZNRF2Q8NHG8 242 aa20.47■□□□□ 0.87
LIMCH1-211ENST00000509638 TRBV7-3A0A075B6L6 115 aa20.46■□□□□ 0.87
LIMCH1-211ENST00000509638 CCL18P55774 89 aa20.46■□□□□ 0.87
LIMCH1-211ENST00000509638 LGALS9CQ6DKI2 356 aa20.46■□□□□ 0.87
LIMCH1-211ENST00000509638 DNAH1Q9P2D7 4330 aa20.46■□□□□ 0.87
LIMCH1-211ENST00000509638 ESRGQ1W209 222 aa20.46■□□□□ 0.87
LIMCH1-211ENST00000509638 FAM104BQ5XKR9 115 aa20.46■□□□□ 0.87
LIMCH1-211ENST00000509638 LY6G6CO95867 125 aa20.45■□□□□ 0.86
LIMCH1-211ENST00000509638 ATP6V0E2Q8NHE4 81 aa20.45■□□□□ 0.86
LIMCH1-211ENST00000509638 VPS13DQ5THJ4 4388 aa20.44■□□□□ 0.86
LIMCH1-211ENST00000509638 LINC00588Q9Y4M8 146 aa20.44■□□□□ 0.86
LIMCH1-211ENST00000509638 UBE2D3P61077 147 aa20.43■□□□□ 0.86
LIMCH1-211ENST00000509638 UBE2D2P62837 147 aa20.43■□□□□ 0.86
LIMCH1-211ENST00000509638 MRAP2Q96G30 205 aa20.43■□□□□ 0.86
LIMCH1-211ENST00000509638 LYPD5Q6UWN5 251 aa20.42■□□□□ 0.86
LIMCH1-211ENST00000509638 FRZBQ92765 325 aa20.42■□□□□ 0.86
LIMCH1-211ENST00000509638 RPL39LQ96EH5 51 aaKnown RBP20.42■□□□□ 0.86
LIMCH1-211ENST00000509638 NIT2Q9NQR4 276 aa20.42■□□□□ 0.86
LIMCH1-211ENST00000509638 NCR2O95944 276 aa20.42■□□□□ 0.86
LIMCH1-211ENST00000509638 MRPL51Q4U2R6 128 aaKnown RBP20.42■□□□□ 0.86
LIMCH1-211ENST00000509638 DNAJC30Q96LL9 226 aa20.42■□□□□ 0.86
LIMCH1-211ENST00000509638 TNFRSF18Q9Y5U5 241 aa20.42■□□□□ 0.86
LIMCH1-211ENST00000509638 LCE6AA0A183 80 aa20.41■□□□□ 0.86
LIMCH1-211ENST00000509638 GAS8-AS1O95177 125 aa20.41■□□□□ 0.86
LIMCH1-211ENST00000509638 SMKR1H3BMG3 65 aa20.4■□□□□ 0.86
LIMCH1-211ENST00000509638 GTSF1LQ9H1H1 148 aa20.39■□□□□ 0.85
LIMCH1-211ENST00000509638 SACSQ9NZJ4 4579 aa20.39■□□□□ 0.85
LIMCH1-211ENST00000509638 MRPS16Q9Y3D3 137 aaKnown RBP20.38■□□□□ 0.85
LIMCH1-211ENST00000509638 RPS10P46783 165 aaKnown RBP20.38■□□□□ 0.85
LIMCH1-211ENST00000509638 ELOBQ15370 118 aa20.38■□□□□ 0.85
LIMCH1-211ENST00000509638 OR10J3Q5JRS4 329 aa20.38■□□□□ 0.85
LIMCH1-211ENST00000509638 CBLN2Q8IUK8 224 aa20.38■□□□□ 0.85
LIMCH1-211ENST00000509638 IGHV3-38A0A0C4DH36 116 aa20.37■□□□□ 0.85
LIMCH1-211ENST00000509638 TIRAPP58753 221 aa20.37■□□□□ 0.85
LIMCH1-211ENST00000509638 TMEM136Q6ZRR5 245 aa20.37■□□□□ 0.85
LIMCH1-211ENST00000509638 TGIF2-C20orf24A0A0A6YYL0 155 aa20.36■□□□□ 0.85
LIMCH1-211ENST00000509638 D6R8Y8 96 aa20.34■□□□□ 0.85
LIMCH1-211ENST00000509638 CKS2P33552 79 aa20.34■□□□□ 0.85
LIMCH1-211ENST00000509638 DAZ4Q86SG3 579 aaKnown RBP20.34■□□□□ 0.85
LIMCH1-211ENST00000509638 SREK1IP1Q8N9Q2 155 aaPredicted RBP20.34■□□□□ 0.85
LIMCH1-211ENST00000509638 DAZ3Q9NR90 486 aaKnown RBP20.34■□□□□ 0.85
LIMCH1-211ENST00000509638 KMT2AQ03164 3969 aa20.34■□□□□ 0.85
LIMCH1-211ENST00000509638 UPK3BQ9BT76 320 aa20.34■□□□□ 0.85
LIMCH1-211ENST00000509638 SMCO4Q9NRQ5 59 aa20.34■□□□□ 0.85
LIMCH1-211ENST00000509638 NRACQ8N912 160 aa20.33■□□□□ 0.84
LIMCH1-211ENST00000509638 TRBV24-1A0A075B6N3 115 aa20.32■□□□□ 0.84
LIMCH1-211ENST00000509638 TRBV6-5A0A0K0K1A5 114 aa20.31■□□□□ 0.84
LIMCH1-211ENST00000509638 HLA-DQA1P01909 254 aa20.31■□□□□ 0.84
LIMCH1-211ENST00000509638 LELP1Q5T871 98 aa20.31■□□□□ 0.84
LIMCH1-211ENST00000509638 YPEL4Q96NS1 127 aa20.31■□□□□ 0.84
LIMCH1-211ENST00000509638 SDHAF1A6NFY7 115 aa20.3■□□□□ 0.84
LIMCH1-211ENST00000509638 GNB1LQ9BYB4 327 aa20.3■□□□□ 0.84
LIMCH1-211ENST00000509638 ST20Q9HBF5 79 aa20.3■□□□□ 0.84
LIMCH1-211ENST00000509638 PPP1R17O96001 155 aa20.29■□□□□ 0.84
LIMCH1-211ENST00000509638 PPBPP02775 128 aa20.29■□□□□ 0.84
LIMCH1-211ENST00000509638 ORMDL3Q8N138 153 aa20.29■□□□□ 0.84
LIMCH1-211ENST00000509638 ATP6V1G1O75348 118 aa20.29■□□□□ 0.84
LIMCH1-211ENST00000509638 COX19Q49B96 90 aa20.29■□□□□ 0.84
LIMCH1-211ENST00000509638 WFDC10BQ8IUB3 73 aa20.29■□□□□ 0.84
LIMCH1-211ENST00000509638 HYDINQ4G0P3 5121 aa20.28■□□□□ 0.84
LIMCH1-211ENST00000509638 TMEM70Q9BUB7 260 aa20.27■□□□□ 0.84
LIMCH1-211ENST00000509638 MT-ND6P03923 174 aa20.26■□□□□ 0.83
LIMCH1-211ENST00000509638 DNAH6Q9C0G6 4158 aa20.26■□□□□ 0.83
LIMCH1-211ENST00000509638 TRBV6-8A0A0A6YYG3 113 aa20.25■□□□□ 0.83
LIMCH1-211ENST00000509638 TRAV8-6A0A0B4J262 113 aa20.25■□□□□ 0.83
LIMCH1-211ENST00000509638 TNFRSF6BO95407 300 aa20.25■□□□□ 0.83
LIMCH1-211ENST00000509638 NPYP01303 97 aa20.25■□□□□ 0.83
LIMCH1-211ENST00000509638 APCSP02743 223 aa20.25■□□□□ 0.83
LIMCH1-211ENST00000509638 SUMO2P61956 95 aaKnown RBP20.25■□□□□ 0.83
LIMCH1-211ENST00000509638 DEFB104AQ8WTQ1 72 aa20.25■□□□□ 0.83
LIMCH1-211ENST00000509638 PRELID3AQ96N28 172 aa20.25■□□□□ 0.83
LIMCH1-211ENST00000509638 Q9H8V8 135 aa20.25■□□□□ 0.83
LIMCH1-211ENST00000509638 IGLV2-18A0A075B6J9 118 aa20.25■□□□□ 0.83
LIMCH1-211ENST00000509638 TMEM97Q5BJF2 176 aa20.25■□□□□ 0.83
LIMCH1-211ENST00000509638 NTM-AS1Q6ZSK4 140 aa20.25■□□□□ 0.83
LIMCH1-211ENST00000509638 RYR2Q92736 4967 aa20.24■□□□□ 0.83
LIMCH1-211ENST00000509638 SIVA1O15304 175 aa20.24■□□□□ 0.83
LIMCH1-211ENST00000509638 COTL1Q14019 142 aa20.23■□□□□ 0.83
LIMCH1-211ENST00000509638 MRPL18Q9H0U6 180 aaKnown RBP20.23■□□□□ 0.83
LIMCH1-211ENST00000509638 SCO1O75880 301 aa20.22■□□□□ 0.83
LIMCH1-211ENST00000509638 KIAA1644Q3SXP7 199 aa20.22■□□□□ 0.83
LIMCH1-211ENST00000509638 PHOX2AO14813 284 aa20.21■□□□□ 0.83
LIMCH1-211ENST00000509638 POLR2KP53803 58 aaKnown RBP20.21■□□□□ 0.83
LIMCH1-211ENST00000509638 C20orf78Q9BR46 151 aa20.21■□□□□ 0.83
LIMCH1-211ENST00000509638 TRBV27A0A0K0K1C4 114 aa20.21■□□□□ 0.83
LIMCH1-211ENST00000509638 I3L3M4 83 aa20.21■□□□□ 0.83
LIMCH1-211ENST00000509638 TRBV25-1A0A075B6N4 114 aa20.2■□□□□ 0.82
LIMCH1-211ENST00000509638 PMCHP20382 165 aa20.2■□□□□ 0.82
LIMCH1-211ENST00000509638 LAMTOR2Q9Y2Q5 125 aa20.2■□□□□ 0.82
LIMCH1-211ENST00000509638 IGHV1-24A0A0C4DH33 117 aa20.19■□□□□ 0.82
LIMCH1-211ENST00000509638 S100A1P23297 94 aa20.19■□□□□ 0.82
LIMCH1-211ENST00000509638 FABP9Q0Z7S8 132 aa20.18■□□□□ 0.82
LIMCH1-211ENST00000509638 IQCJQ1A5X6 159 aa20.18■□□□□ 0.82
LIMCH1-211ENST00000509638 SMIM2Q9BVW6 85 aa20.18■□□□□ 0.82
LIMCH1-211ENST00000509638 TRAPPC1Q9Y5R8 145 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms