RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 ZNF462Q96JM2 2506 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 MED13Q9UHV7 2174 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 IGHV3-21A0A0B4J1V1 117 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 IGHV1-3A0A0C4DH29 117 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 A0A1B0GW54 56 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 CEBPZOSA8MTT3 80 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 C9JCJ5 164 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 M0R2P5 195 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 CCL22O00626 93 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 UQCRQO14949 82 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 SNCGO76070 127 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 NCR2O95944 276 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 NAPSAO96009 420 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 IGLC6P0CF74 106 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 CGB3P0DN86 165 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 CGB7P0DN87 165 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 CD28P10747 220 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 PEBP1P30086 187 aaKnown RBP2.79□□□□□ -1.96
SF3B1-212ENST00000496458 SPINT3P49223 89 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 DEFB133Q30KQ1 61 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 Q56UQ5 140 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 NMSQ5H8A3 153 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 SCXQ7RTU7 201 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 LHFPL1Q86WI0 220 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 AMN1Q8IY45 258 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 CLECL1Q8IZS7 167 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 CCL4L1Q8NHW4 92 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 RAB37Q96AX2 223 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 TOMM6Q96B49 74 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 NAA38Q9BRA0 125 aaKnown RBP2.79□□□□□ -1.96
SF3B1-212ENST00000496458 FAM103A1Q9BTL3 118 aaKnown RBP2.79□□□□□ -1.96
SF3B1-212ENST00000496458 IMUPQ9GZP8 106 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 C11orf1Q9H5F2 150 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 SLC39A9Q9NUM3 307 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 IL36BQ9NZH7 164 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 HIGD1BQ9P298 99 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 AMMECR1Q9Y4X0 333 aaPredicted RBP2.79□□□□□ -1.96
SF3B1-212ENST00000496458 TMEM14AQ9Y6G1 99 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 LY96Q9Y6Y9 160 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 GCN1Q92616 2671 aaKnown RBP2.79□□□□□ -1.96
SF3B1-212ENST00000496458 PCNX1Q96RV3 2341 aa2.79□□□□□ -1.96
SF3B1-212ENST00000496458 ZNF407Q9C0G0 2248 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 SDK2Q58EX2 2172 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 HIVEP2P31629 2446 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 TRAV5A0A0B4J249 113 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 PIGBOS1A0A0B4J2F0 54 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 MDFIC2A0A1B0GVS7 189 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 IGLL5B9A064 214 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 K7ERS5 55 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 SDCBPO00560 298 aaPredicted RBP2.78□□□□□ -1.96
SF3B1-212ENST00000496458 MPV17P39210 176 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 TAS2R45P59539 299 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 ZNF141Q15928 474 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 SPRNQ5BIV9 151 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 LYRM7Q5U5X0 104 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 SSX8Q7RTT4 187 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 TEN1Q86WV5 123 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 C3orf22Q8N5N4 141 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 OTOSQ8NHW6 89 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 LINC01560Q8TB33 94 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 RNASE6Q93091 150 aaKnown RBP2.78□□□□□ -1.96
SF3B1-212ENST00000496458 CHCHD1Q96BP2 118 aaKnown RBP2.78□□□□□ -1.96
SF3B1-212ENST00000496458 LINC00526Q96FQ7 95 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 COX14Q96I36 57 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 TM2D3Q9BRN9 247 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 LAMTOR3Q9UHA4 124 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 SCN3AQ9NY46 2000 aa2.78□□□□□ -1.96
SF3B1-212ENST00000496458 LOC107984640A0A0U1RRK4 108 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 LOC107986453A0A1B0GWG9 222 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 IGKV4-1P06312 121 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 INAFM2P0DMQ5 153 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 CRYGAP11844 174 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 RBM11P57052 281 aaKnown RBP2.77□□□□□ -1.97
SF3B1-212ENST00000496458 FXYD6P3P58550 94 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 TMEM258P61165 79 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 ZNF90Q03938 601 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 RRN3P1Q2M238 152 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 CFAP126Q5VTH2 177 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 TRAPPC6BQ86SZ2 158 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 SBSPONQ8IVN8 264 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 PATE1Q8WXA2 126 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 H1FXQ92522 213 aaKnown RBP2.77□□□□□ -1.97
SF3B1-212ENST00000496458 LINC01600Q96MT4 127 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 RTL8AQ9BWD3 113 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 CKLFQ9UBR5 152 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 PHLDA3Q9Y5J5 127 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 TIMM9Q9Y5J7 89 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 CHCHD2Q9Y6H1 151 aaPredicted RBP2.77□□□□□ -1.97
SF3B1-212ENST00000496458 U3KQA8 63 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 ARL2-SNX15V9GYD0 113 aa2.77□□□□□ -1.97
SF3B1-212ENST00000496458 DIDO1Q9BTC0 2240 aaKnown RBP2.77□□□□□ -1.97
SF3B1-212ENST00000496458 COL5A1P20908 1838 aaPredicted RBP2.77□□□□□ -1.97
SF3B1-212ENST00000496458 DOCK10Q96BY6 2186 aa2.76□□□□□ -1.97
SF3B1-212ENST00000496458 CPAMD8Q8IZJ3 1885 aa2.76□□□□□ -1.97
SF3B1-212ENST00000496458 TRBV20-1A0A075B6N2 111 aa2.76□□□□□ -1.97
SF3B1-212ENST00000496458 IGHV1-24A0A0C4DH33 117 aa2.76□□□□□ -1.97
SF3B1-212ENST00000496458 C3orf85A0A1B0GTC6 90 aa2.76□□□□□ -1.97
SF3B1-212ENST00000496458 CRYM-AS1A6NIL9 109 aa2.76□□□□□ -1.97
SF3B1-212ENST00000496458 F2Z2F3 143 aa2.76□□□□□ -1.97
SF3B1-212ENST00000496458 KRTAP5-8O75690 187 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms