RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 RPL39LQ96EH5 51 aaKnown RBP10.96□□□□□ -0.65
HPS4-216ENST00000493455 STARD9Q9P2P6 4700 aa10.96□□□□□ -0.66
HPS4-216ENST00000493455 H3BNG1 76 aa10.95□□□□□ -0.66
HPS4-216ENST00000493455 M0QY20 66 aa10.95□□□□□ -0.66
HPS4-216ENST00000493455 GAS8-AS1O95177 125 aa10.95□□□□□ -0.66
HPS4-216ENST00000493455 S100A1P23297 94 aa10.95□□□□□ -0.66
HPS4-216ENST00000493455 UBE2DNLQ8IWF7 75 aa10.95□□□□□ -0.66
HPS4-216ENST00000493455 TNFRSF18Q9Y5U5 241 aa10.95□□□□□ -0.66
HPS4-216ENST00000493455 IGHV3-38A0A0C4DH36 116 aa10.94□□□□□ -0.66
HPS4-216ENST00000493455 TRBV10-1A0A0K0K1A3 114 aa10.94□□□□□ -0.66
HPS4-216ENST00000493455 CKS2P33552 79 aa10.94□□□□□ -0.66
HPS4-216ENST00000493455 OR10J3Q5JRS4 329 aa10.94□□□□□ -0.66
HPS4-216ENST00000493455 TMEM136Q6ZRR5 245 aa10.94□□□□□ -0.66
HPS4-216ENST00000493455 NEGR1Q7Z3B1 354 aa10.94□□□□□ -0.66
HPS4-216ENST00000493455 DEFB104AQ8WTQ1 72 aa10.94□□□□□ -0.66
HPS4-216ENST00000493455 MRAP2Q96G30 205 aa10.94□□□□□ -0.66
HPS4-216ENST00000493455 D6R8Y8 96 aa10.93□□□□□ -0.66
HPS4-216ENST00000493455 TCTAP57738 103 aa10.93□□□□□ -0.66
HPS4-216ENST00000493455 ATP6V0E2Q8NHE4 81 aa10.93□□□□□ -0.66
HPS4-216ENST00000493455 FRZBQ92765 325 aa10.93□□□□□ -0.66
HPS4-216ENST00000493455 TRBV7-3A0A075B6L6 115 aa10.92□□□□□ -0.66
HPS4-216ENST00000493455 RPS10P46783 165 aaKnown RBP10.92□□□□□ -0.66
HPS4-216ENST00000493455 KIAA1644Q3SXP7 199 aa10.92□□□□□ -0.66
HPS4-216ENST00000493455 NIT2Q9NQR4 276 aa10.92□□□□□ -0.66
HPS4-216ENST00000493455 CSMD3Q7Z407 3707 aa10.92□□□□□ -0.66
HPS4-216ENST00000493455 HLA-DQA1P01909 254 aa10.91□□□□□ -0.66
HPS4-216ENST00000493455 APCSP02743 223 aa10.91□□□□□ -0.66
HPS4-216ENST00000493455 TENM2Q9NT68 2774 aa10.91□□□□□ -0.66
HPS4-216ENST00000493455 TRBV24-1A0A075B6N3 115 aa10.9□□□□□ -0.66
HPS4-216ENST00000493455 LY6G6CO95867 125 aa10.9□□□□□ -0.66
HPS4-216ENST00000493455 CCL18P55774 89 aa10.9□□□□□ -0.66
HPS4-216ENST00000493455 UBE2D3P61077 147 aa10.9□□□□□ -0.66
HPS4-216ENST00000493455 UBE2D2P62837 147 aa10.9□□□□□ -0.66
HPS4-216ENST00000493455 ESRGQ1W209 222 aa10.9□□□□□ -0.66
HPS4-216ENST00000493455 COX19Q49B96 90 aa10.9□□□□□ -0.66
HPS4-216ENST00000493455 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.9□□□□□ -0.66
HPS4-216ENST00000493455 DNAJC30Q96LL9 226 aa10.9□□□□□ -0.66
HPS4-216ENST00000493455 MRPL18Q9H0U6 180 aaKnown RBP10.9□□□□□ -0.66
HPS4-216ENST00000493455 LINC00694P0DN24 101 aa10.89□□□□□ -0.67
HPS4-216ENST00000493455 FABP9Q0Z7S8 132 aa10.89□□□□□ -0.67
HPS4-216ENST00000493455 LYPD5Q6UWN5 251 aa10.89□□□□□ -0.67
HPS4-216ENST00000493455 SH2D6Q7Z4S9 175 aa10.89□□□□□ -0.67
HPS4-216ENST00000493455 ORMDL3Q8N138 153 aa10.89□□□□□ -0.67
HPS4-216ENST00000493455 PRELID3AQ96N28 172 aa10.89□□□□□ -0.67
HPS4-216ENST00000493455 YPEL4Q96NS1 127 aa10.89□□□□□ -0.67
HPS4-216ENST00000493455 GNB1LQ9BYB4 327 aa10.89□□□□□ -0.67
HPS4-216ENST00000493455 ST20Q9HBF5 79 aa10.89□□□□□ -0.67
HPS4-216ENST00000493455 TRAPPC1Q9Y5R8 145 aa10.89□□□□□ -0.67
HPS4-216ENST00000493455 DYNC2H1Q8NCM8 4307 aaKnown RBP10.89□□□□□ -0.67
HPS4-216ENST00000493455 NPYP01303 97 aa10.88□□□□□ -0.67
HPS4-216ENST00000493455 GTSF1LQ9H1H1 148 aa10.88□□□□□ -0.67
HPS4-216ENST00000493455 LINC00588Q9Y4M8 146 aa10.88□□□□□ -0.67
HPS4-216ENST00000493455 SDHAF1A6NFY7 115 aa10.87□□□□□ -0.67
HPS4-216ENST00000493455 TNFRSF6BO95407 300 aa10.87□□□□□ -0.67
HPS4-216ENST00000493455 MT-ND6P03923 174 aa10.87□□□□□ -0.67
HPS4-216ENST00000493455 NRACQ8N912 160 aa10.87□□□□□ -0.67
HPS4-216ENST00000493455 PPBPP02775 128 aa10.86□□□□□ -0.67
HPS4-216ENST00000493455 PMCHP20382 165 aa10.86□□□□□ -0.67
HPS4-216ENST00000493455 PLECQ15149 4684 aaKnown RBP10.86□□□□□ -0.67
HPS4-216ENST00000493455 LOC389332A0A1B0GUA5 103 aa10.85□□□□□ -0.67
HPS4-216ENST00000493455 PPP1R17O96001 155 aa10.85□□□□□ -0.67
HPS4-216ENST00000493455 DAZ4Q86SG3 579 aaKnown RBP10.85□□□□□ -0.67
HPS4-216ENST00000493455 LINC00476Q8WZB0 136 aa10.85□□□□□ -0.67
HPS4-216ENST00000493455 DAZ3Q9NR90 486 aaKnown RBP10.85□□□□□ -0.67
HPS4-216ENST00000493455 TRBV6-5A0A0K0K1A5 114 aa10.84□□□□□ -0.67
HPS4-216ENST00000493455 SUMO2P61956 95 aaKnown RBP10.84□□□□□ -0.67
HPS4-216ENST00000493455 COTL1Q14019 142 aa10.84□□□□□ -0.67
HPS4-216ENST00000493455 TMEM70Q9BUB7 260 aa10.84□□□□□ -0.67
HPS4-216ENST00000493455 MRPS16Q9Y3D3 137 aaKnown RBP10.84□□□□□ -0.67
HPS4-216ENST00000493455 TRAV8-6A0A0B4J262 113 aa10.83□□□□□ -0.68
HPS4-216ENST00000493455 COLCA2A8K830 154 aa10.83□□□□□ -0.68
HPS4-216ENST00000493455 LGALS9CQ6DKI2 356 aa10.83□□□□□ -0.68
HPS4-216ENST00000493455 MAP1LC3AQ9H492 121 aa10.83□□□□□ -0.68
HPS4-216ENST00000493455 IGLV2-18A0A075B6J9 118 aa10.82□□□□□ -0.68
HPS4-216ENST00000493455 I3L3M4 83 aa10.82□□□□□ -0.68
HPS4-216ENST00000493455 RAB5AP20339 215 aa10.82□□□□□ -0.68
HPS4-216ENST00000493455 LELP1Q5T871 98 aa10.82□□□□□ -0.68
HPS4-216ENST00000493455 WFDC10BQ8IUB3 73 aa10.82□□□□□ -0.68
HPS4-216ENST00000493455 FCER1GP30273 86 aa10.81□□□□□ -0.68
HPS4-216ENST00000493455 AMTP48728 403 aa10.81□□□□□ -0.68
HPS4-216ENST00000493455 POLR2KP53803 58 aaKnown RBP10.81□□□□□ -0.68
HPS4-216ENST00000493455 NTM-AS1Q6ZSK4 140 aa10.81□□□□□ -0.68
HPS4-216ENST00000493455 C20orf78Q9BR46 151 aa10.81□□□□□ -0.68
HPS4-216ENST00000493455 CHCHD5Q9BSY4 110 aa10.81□□□□□ -0.68
HPS4-216ENST00000493455 SMIM2Q9BVW6 85 aa10.81□□□□□ -0.68
HPS4-216ENST00000493455 TRBV25-1A0A075B6N4 114 aa10.8□□□□□ -0.68
HPS4-216ENST00000493455 TRBV6-8A0A0A6YYG3 113 aa10.8□□□□□ -0.68
HPS4-216ENST00000493455 IGHV1-24A0A0C4DH33 117 aa10.8□□□□□ -0.68
HPS4-216ENST00000493455 VCYO14598 125 aa10.8□□□□□ -0.68
HPS4-216ENST00000493455 PHOX2AO14813 284 aa10.8□□□□□ -0.68
HPS4-216ENST00000493455 TIRAPP58753 221 aa10.8□□□□□ -0.68
HPS4-216ENST00000493455 TMEM97Q5BJF2 176 aa10.8□□□□□ -0.68
HPS4-216ENST00000493455 KIR2DL4Q99706 377 aa10.8□□□□□ -0.68
HPS4-216ENST00000493455 ALKBH7Q9BT30 221 aaPredicted RBP10.8□□□□□ -0.68
HPS4-216ENST00000493455 LAMTOR2Q9Y2Q5 125 aa10.8□□□□□ -0.68
HPS4-216ENST00000493455 TMEM262E9PQX1 116 aa10.79□□□□□ -0.68
HPS4-216ENST00000493455 TCAPO15273 167 aa10.79□□□□□ -0.68
HPS4-216ENST00000493455 TSHBP01222 138 aa10.79□□□□□ -0.68
HPS4-216ENST00000493455 IGHV3-30P01768 117 aa10.79□□□□□ -0.68
HPS4-216ENST00000493455 IGHV3-33P01772 117 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms