RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 CTRLP40313 264 aa10.31□□□□□ -0.76
VARS-223ENST00000474643 KRTAP10-2P60368 255 aa10.31□□□□□ -0.76
VARS-223ENST00000474643 CACNG7P62955 275 aa10.31□□□□□ -0.76
VARS-223ENST00000474643 WFDC10BQ8IUB3 73 aa10.31□□□□□ -0.76
VARS-223ENST00000474643 C10orf126Q8N4M7 172 aa10.31□□□□□ -0.76
VARS-223ENST00000474643 CLRN3Q8NCR9 226 aa10.31□□□□□ -0.76
VARS-223ENST00000474643 MSRB1Q9NZV6 116 aa10.31□□□□□ -0.76
VARS-223ENST00000474643 APOC3P02656 99 aa10.3□□□□□ -0.76
VARS-223ENST00000474643 CRYGDP07320 174 aa10.3□□□□□ -0.76
VARS-223ENST00000474643 ZNF56Q15929 161 aa10.3□□□□□ -0.76
VARS-223ENST00000474643 Q6ZSN1 163 aa10.3□□□□□ -0.76
VARS-223ENST00000474643 PGPEP1Q9NXJ5 209 aa10.3□□□□□ -0.76
VARS-223ENST00000474643 NAT8BQ9UHF3 227 aa10.3□□□□□ -0.76
VARS-223ENST00000474643 HSPG2P98160 4391 aa10.29□□□□□ -0.76
VARS-223ENST00000474643 TRAV8-6A0A0B4J262 113 aa10.29□□□□□ -0.76
VARS-223ENST00000474643 GAGE12JA6NER3 117 aa10.29□□□□□ -0.76
VARS-223ENST00000474643 F5H697 171 aa10.29□□□□□ -0.76
VARS-223ENST00000474643 GAGE1Q13065 139 aa10.29□□□□□ -0.76
VARS-223ENST00000474643 GAGE4Q13068 117 aa10.29□□□□□ -0.76
VARS-223ENST00000474643 GAGE5Q13069 117 aa10.29□□□□□ -0.76
VARS-223ENST00000474643 GAGE13Q4V321 117 aa10.29□□□□□ -0.76
VARS-223ENST00000474643 OR10J3Q5JRS4 329 aa10.29□□□□□ -0.76
VARS-223ENST00000474643 C14orf178Q8N769 122 aaPredicted RBP10.29□□□□□ -0.76
VARS-223ENST00000474643 GTSF1Q8WW33 167 aa10.29□□□□□ -0.76
VARS-223ENST00000474643 AP1S3Q96PC3 154 aa10.29□□□□□ -0.76
VARS-223ENST00000474643 TNFRSF18Q9Y5U5 241 aa10.29□□□□□ -0.76
VARS-223ENST00000474643 LRP1BQ9NZR2 4599 aa10.29□□□□□ -0.76
VARS-223ENST00000474643 A0A1B0GW15 77 aa10.28□□□□□ -0.76
VARS-223ENST00000474643 C7orf77A4D0Y5 90 aa10.28□□□□□ -0.76
VARS-223ENST00000474643 HIGD1CA8MV81 97 aa10.28□□□□□ -0.76
VARS-223ENST00000474643 UFSP1Q6NVU6 142 aa10.28□□□□□ -0.76
VARS-223ENST00000474643 CDPF1Q6NVV7 123 aa10.28□□□□□ -0.76
VARS-223ENST00000474643 ATP6V0E2Q8NHE4 81 aa10.28□□□□□ -0.76
VARS-223ENST00000474643 TRAV9-1A0A075B6T8 112 aa10.27□□□□□ -0.77
VARS-223ENST00000474643 LYZL1Q6UWQ5 148 aa10.27□□□□□ -0.77
VARS-223ENST00000474643 Q6ZRN7 208 aaPredicted RBP10.27□□□□□ -0.77
VARS-223ENST00000474643 Q8N1X5 172 aa10.27□□□□□ -0.77
VARS-223ENST00000474643 BORCS7Q96B45 105 aa10.27□□□□□ -0.77
VARS-223ENST00000474643 RYR1P21817 5038 aa10.27□□□□□ -0.77
VARS-223ENST00000474643 IGHV3-38A0A0C4DH36 116 aa10.26□□□□□ -0.77
VARS-223ENST00000474643 A0A1B0GUT8 65 aa10.26□□□□□ -0.77
VARS-223ENST00000474643 MGPP08493 103 aa10.26□□□□□ -0.77
VARS-223ENST00000474643 DNAH10OSP0CZ25 163 aa10.26□□□□□ -0.77
VARS-223ENST00000474643 KRTAP4-5Q9BYR2 181 aa10.26□□□□□ -0.77
VARS-223ENST00000474643 FUSP35637 526 aaKnown RBP eCLIP10.25□□□□□ -0.77
VARS-223ENST00000474643 RAB4BP61018 213 aa10.25□□□□□ -0.77
VARS-223ENST00000474643 RPL36AP83881 106 aaKnown RBP10.25□□□□□ -0.77
VARS-223ENST00000474643 ATP5L2Q7Z4Y8 100 aa10.25□□□□□ -0.77
VARS-223ENST00000474643 NUP35Q8NFH5 326 aa10.25□□□□□ -0.77
VARS-223ENST00000474643 RPL36ALQ969Q0 106 aaKnown RBP10.25□□□□□ -0.77
VARS-223ENST00000474643 BTF3L4Q96K17 158 aa10.25□□□□□ -0.77
VARS-223ENST00000474643 GTSF1LQ9H1H1 148 aa10.25□□□□□ -0.77
VARS-223ENST00000474643 A0A087WTM6 91 aa10.24□□□□□ -0.77
VARS-223ENST00000474643 S100A8P05109 93 aa10.24□□□□□ -0.77
VARS-223ENST00000474643 TRGC1P0CF51 173 aa10.24□□□□□ -0.77
VARS-223ENST00000474643 NTF3P20783 257 aa10.24□□□□□ -0.77
VARS-223ENST00000474643 S100A1P23297 94 aa10.24□□□□□ -0.77
VARS-223ENST00000474643 TIRAPP58753 221 aa10.24□□□□□ -0.77
VARS-223ENST00000474643 TWIST1Q15672 202 aa10.24□□□□□ -0.77
VARS-223ENST00000474643 KCNIP4Q6PIL6 250 aa10.24□□□□□ -0.77
VARS-223ENST00000474643 Q9HAA7 133 aa10.24□□□□□ -0.77
VARS-223ENST00000474643 RPS10P5Q9NQ39 176 aa10.24□□□□□ -0.77
VARS-223ENST00000474643 TRBV10-1A0A0K0K1A3 114 aa10.23□□□□□ -0.77
VARS-223ENST00000474643 ATP6V1G1O75348 118 aa10.23□□□□□ -0.77
VARS-223ENST00000474643 S100PP25815 95 aa10.23□□□□□ -0.77
VARS-223ENST00000474643 RIGQ13278 110 aa10.23□□□□□ -0.77
VARS-223ENST00000474643 LELP1Q5T871 98 aa10.23□□□□□ -0.77
VARS-223ENST00000474643 RASL11AQ6T310 242 aa10.23□□□□□ -0.77
VARS-223ENST00000474643 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.23□□□□□ -0.77
VARS-223ENST00000474643 FRZBQ92765 325 aa10.23□□□□□ -0.77
VARS-223ENST00000474643 PGLYRP4Q96LB8 373 aa10.23□□□□□ -0.77
VARS-223ENST00000474643 DNAH5Q8TE73 4624 aa10.22□□□□□ -0.77
VARS-223ENST00000474643 EPM2AB3EWF7 344 aa10.22□□□□□ -0.77
VARS-223ENST00000474643 SMIM15Q7Z3B0 74 aa10.22□□□□□ -0.77
VARS-223ENST00000474643 Q9UF83 564 aa10.22□□□□□ -0.77
VARS-223ENST00000474643 TRBV7-3A0A075B6L6 115 aa10.21□□□□□ -0.77
VARS-223ENST00000474643 IGHV3-30P01768 117 aa10.21□□□□□ -0.77
VARS-223ENST00000474643 IGHV3-33P01772 117 aa10.21□□□□□ -0.77
VARS-223ENST00000474643 IGHV3-30-3P0DP02 117 aa10.21□□□□□ -0.77
VARS-223ENST00000474643 IGHV3-30-5P0DP03 117 aa10.21□□□□□ -0.77
VARS-223ENST00000474643 DPH3P1Q9H4G8 78 aa10.21□□□□□ -0.77
VARS-223ENST00000474643 H7C1H1 209 aa10.2□□□□□ -0.78
VARS-223ENST00000474643 LINC01556Q5JQF7 62 aa10.2□□□□□ -0.78
VARS-223ENST00000474643 GATD1Q8NB37 220 aa10.2□□□□□ -0.78
VARS-223ENST00000474643 TMEM191AQ9H0A3 160 aa10.2□□□□□ -0.78
VARS-223ENST00000474643 IGLV5-52A0A0A0MRZ9 124 aa10.19□□□□□ -0.78
VARS-223ENST00000474643 A0A1B0GXF2 115 aa10.19□□□□□ -0.78
VARS-223ENST00000474643 LINC00694P0DN24 101 aa10.19□□□□□ -0.78
VARS-223ENST00000474643 GCSHP23434 173 aa10.19□□□□□ -0.78
VARS-223ENST00000474643 HBBP68871 147 aa10.19□□□□□ -0.78
VARS-223ENST00000474643 COX19Q49B96 90 aa10.19□□□□□ -0.78
VARS-223ENST00000474643 NEXN-AS1Q8NBZ9 246 aa10.19□□□□□ -0.78
VARS-223ENST00000474643 KIF25-AS1Q9Y6Z4 181 aa10.19□□□□□ -0.78
VARS-223ENST00000474643 ABCA13Q86UQ4 5058 aa10.19□□□□□ -0.78
VARS-223ENST00000474643 APOBP04114 4563 aaKnown RBP10.19□□□□□ -0.78
VARS-223ENST00000474643 UBE2D3P61077 147 aa10.18□□□□□ -0.78
VARS-223ENST00000474643 UBE2D2P62837 147 aa10.18□□□□□ -0.78
VARS-223ENST00000474643 SUMO4Q6EEV6 95 aa10.18□□□□□ -0.78
VARS-223ENST00000474643 SMCO4Q9NRQ5 59 aa10.18□□□□□ -0.78
VARS-223ENST00000474643 URGCP-MRPS24S4R325 110 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms