RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 AKAP13Q12802 2813 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 TRAV2A0A0B4J234 112 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 TRAV8-4A0A0B4J246 113 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 IGHV3-16A0A0C4DH30 117 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 A6NDX4 124 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 TIMM17BO60830 172 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 TCF15Q12870 199 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 LINC01620Q4KN68 170 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 RNF152Q8N8N0 203 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 TMEM263Q8WUH6 116 aaKnown RBP4.58□□□□□ -1.68
HERC4-209ENST00000473533 TIMM21Q9BVV7 248 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 SPANXCQ9NY87 97 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 SORL1Q92673 2214 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 A0A0J9YXY3 114 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 LINC01548A6NM66 108 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 M0QY20 66 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 GAGE5Q13069 117 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 GAGE6Q13070 117 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 TTC32Q5I0X7 151 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 TMEM219Q86XT9 240 aa4.58□□□□□ -1.68
HERC4-209ENST00000473533 ZNF292O60281 2723 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 POLQO75417 2590 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 H3BMM0 161 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 IGLV1-40P01703 118 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 MT-ATP8P03928 68 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 ZNF22P17026 224 aaPredicted RBP4.57□□□□□ -1.68
HERC4-209ENST00000473533 SRD5A1P18405 259 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 XGP55808 180 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 CIRBPQ14011 172 aaKnown RBP4.57□□□□□ -1.68
HERC4-209ENST00000473533 FAM74A4Q5TZK3 123 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 UBE2WQ96B02 151 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 CARD19Q96LW7 228 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 USP9YO00507 2555 aaPredicted RBP4.57□□□□□ -1.68
HERC4-209ENST00000473533 TRAV26-1A0A087WT03 109 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 A0A087WWL8 130 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 TRAV12-3A0A0B4J271 114 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 FAM240AA0A1B0GVK7 77 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 CD28P10747 220 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 GATA3P23771 443 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 RPL39P62891 51 aaKnown RBP4.57□□□□□ -1.68
HERC4-209ENST00000473533 ZNRF2Q8NHG8 242 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 PTH2Q96A98 100 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 NOTCH2Q04721 2471 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 ACYP1P07311 99 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 MUSTN1Q8IVN3 82 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 DNAJC30Q96LL9 226 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 AMELXQ99217 191 aa4.57□□□□□ -1.68
HERC4-209ENST00000473533 FAM208BQ5VWN6 2430 aa4.56□□□□□ -1.68
HERC4-209ENST00000473533 ZFYVE26Q68DK2 2539 aa4.56□□□□□ -1.68
HERC4-209ENST00000473533 Q6ZQT7 251 aa4.56□□□□□ -1.68
HERC4-209ENST00000473533 DCANP1Q8TF63 244 aa4.56□□□□□ -1.68
HERC4-209ENST00000473533 TNFRSF18Q9Y5U5 241 aa4.56□□□□□ -1.68
HERC4-209ENST00000473533 MYO18BQ8IUG5 2567 aa4.56□□□□□ -1.68
HERC4-209ENST00000473533 IGLV4-3A0A075B6K6 122 aa4.56□□□□□ -1.68
HERC4-209ENST00000473533 IGHV1-58A0A0C4DH39 117 aa4.56□□□□□ -1.68
HERC4-209ENST00000473533 TINCRA0A1B0GVN0 87 aa4.56□□□□□ -1.68
HERC4-209ENST00000473533 F6UB75 175 aa4.56□□□□□ -1.68
HERC4-209ENST00000473533 IGHV3-11P01762 117 aa4.56□□□□□ -1.68
HERC4-209ENST00000473533 TSPEAR-AS2P59090 65 aa4.56□□□□□ -1.68
HERC4-209ENST00000473533 MRPS36P82909 103 aaKnown RBP4.56□□□□□ -1.68
HERC4-209ENST00000473533 Q6ZS46 218 aa4.56□□□□□ -1.68
HERC4-209ENST00000473533 ARHGAP32A7KAX9 2087 aa4.56□□□□□ -1.68
HERC4-209ENST00000473533 EMP1P54849 157 aa4.55□□□□□ -1.68
HERC4-209ENST00000473533 SFTA2Q6UW10 78 aa4.55□□□□□ -1.68
HERC4-209ENST00000473533 C2orf82Q6UX34 121 aa4.55□□□□□ -1.68
HERC4-209ENST00000473533 RAX2Q96IS3 184 aa4.55□□□□□ -1.68
HERC4-209ENST00000473533 CITED1Q99966 193 aa4.55□□□□□ -1.68
HERC4-209ENST00000473533 H3BUX3 64 aa4.55□□□□□ -1.68
HERC4-209ENST00000473533 TRBV12-3P01733 135 aa4.55□□□□□ -1.68
HERC4-209ENST00000473533 MIAQ16674 131 aa4.55□□□□□ -1.68
HERC4-209ENST00000473533 IGKV3-7A0A075B6H7 116 aa4.55□□□□□ -1.68
HERC4-209ENST00000473533 DSCR9P59020 149 aa4.55□□□□□ -1.68
HERC4-209ENST00000473533 NTN5Q8WTR8 489 aaPredicted RBP4.55□□□□□ -1.68
HERC4-209ENST00000473533 LINC00527Q9UJ94 153 aa4.55□□□□□ -1.68
HERC4-209ENST00000473533 ICOSQ9Y6W8 199 aa4.55□□□□□ -1.68
HERC4-209ENST00000473533 CSMD2Q7Z408 3487 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 K7EQG2 157 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 IGHV3-30-3P0DP02 117 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 ZNF415Q09FC8 603 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 Q8N1Y9 231 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 NDUFA12Q9UI09 145 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 CFHR3Q02985 330 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 LY6EQ16553 131 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 CCDC168Q8NDH2 2452 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 ABCA2Q9BZC7 2435 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 PTPRQQ9UMZ3 2332 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 EPG5Q9HCE0 2579 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 A0A0J9YXV3 536 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 GAGE12JA6NER3 117 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 GAGE7O76087 117 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 PRSS2P07478 247 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 GAGE12FP0CL80 117 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 GAGE12GP0CL81 117 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 GAGE12IP0CL82 117 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 GAGE4Q13068 117 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 SPXQ9BT56 116 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 PPDPFQ9H3Y8 114 aa4.54□□□□□ -1.68
HERC4-209ENST00000473533 H7C2G1 150 aa4.53□□□□□ -1.68
HERC4-209ENST00000473533 IGHV4-39P01824 125 aa4.53□□□□□ -1.68
HERC4-209ENST00000473533 JPT2Q9H910 190 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 198.7 ms