RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 HLA-DRB3P79483 266 aa1.63□□□□□ -2.15
VPS13A-210ENST00000471439 STX3Q13277 289 aa1.63□□□□□ -2.15
VPS13A-210ENST00000471439 MIAQ16674 131 aa1.63□□□□□ -2.15
VPS13A-210ENST00000471439 BSXQ3C1V8 233 aa1.63□□□□□ -2.15
VPS13A-210ENST00000471439 C9orf116Q5BN46 136 aaPredicted RBP1.63□□□□□ -2.15
VPS13A-210ENST00000471439 EIF5AL1Q6IS14 154 aaKnown RBP1.63□□□□□ -2.15
VPS13A-210ENST00000471439 RPL13AP3Q6NVV1 102 aa1.63□□□□□ -2.15
VPS13A-210ENST00000471439 FUNDC1Q8IVP5 155 aa1.63□□□□□ -2.15
VPS13A-210ENST00000471439 C3orf22Q8N5N4 141 aa1.63□□□□□ -2.15
VPS13A-210ENST00000471439 BPIFB6Q8NFQ5 453 aa1.63□□□□□ -2.15
VPS13A-210ENST00000471439 OR51A2Q8NGJ7 313 aa1.63□□□□□ -2.15
VPS13A-210ENST00000471439 OR1L8Q8NGR8 309 aa1.63□□□□□ -2.15
VPS13A-210ENST00000471439 PECRQ9BY49 303 aa1.63□□□□□ -2.15
VPS13A-210ENST00000471439 C20orf27Q9GZN8 174 aa1.63□□□□□ -2.15
VPS13A-210ENST00000471439 DCSTAMPQ9H295 470 aa1.63□□□□□ -2.15
VPS13A-210ENST00000471439 POMPQ9Y244 141 aa1.63□□□□□ -2.15
VPS13A-210ENST00000471439 PRELID3BQ9Y3B1 194 aa1.63□□□□□ -2.15
VPS13A-210ENST00000471439 TRAV8-2A0A0B4J237 113 aa1.62□□□□□ -2.15
VPS13A-210ENST00000471439 COPEO14579 308 aa1.62□□□□□ -2.15
VPS13A-210ENST00000471439 APOA1P02647 267 aa1.62□□□□□ -2.15
VPS13A-210ENST00000471439 CAV1Q03135 178 aa1.62□□□□□ -2.15
VPS13A-210ENST00000471439 AADACL3Q5VUY0 350 aa1.62□□□□□ -2.15
VPS13A-210ENST00000471439 TMEM244Q5VVB8 128 aa1.62□□□□□ -2.15
VPS13A-210ENST00000471439 HS3ST5Q8IZT8 346 aa1.62□□□□□ -2.15
VPS13A-210ENST00000471439 ZNF738Q8NE65 137 aa1.62□□□□□ -2.15
VPS13A-210ENST00000471439 OR10D4PQ8NGN7 298 aa1.62□□□□□ -2.15
VPS13A-210ENST00000471439 GNPDA2Q8TDQ7 276 aa1.62□□□□□ -2.15
VPS13A-210ENST00000471439 Q8WTZ3 238 aa1.62□□□□□ -2.15
VPS13A-210ENST00000471439 PYURFQ96I23 114 aa1.62□□□□□ -2.15
VPS13A-210ENST00000471439 TMEM56Q96MV1 263 aa1.62□□□□□ -2.15
VPS13A-210ENST00000471439 S100A13Q99584 98 aa1.62□□□□□ -2.15
VPS13A-210ENST00000471439 CGREF1Q99674 301 aa1.62□□□□□ -2.15
VPS13A-210ENST00000471439 FAAP24Q9BTP7 215 aa1.62□□□□□ -2.15
VPS13A-210ENST00000471439 BANF2Q9H503 90 aa1.62□□□□□ -2.15
VPS13A-210ENST00000471439 BAIAP2Q9UQB8 552 aa1.62□□□□□ -2.15
VPS13A-210ENST00000471439 TRAV4A0A0B4J268 109 aa1.61□□□□□ -2.15
VPS13A-210ENST00000471439 C20orf202A1L168 122 aa1.61□□□□□ -2.15
VPS13A-210ENST00000471439 FAM24AA6NFZ4 105 aa1.61□□□□□ -2.15
VPS13A-210ENST00000471439 PSMA1P25786 263 aaKnown RBP1.61□□□□□ -2.15
VPS13A-210ENST00000471439 QRFPP83859 136 aa1.61□□□□□ -2.15
VPS13A-210ENST00000471439 CLPSL2Q6UWE3 100 aa1.61□□□□□ -2.15
VPS13A-210ENST00000471439 C6orf201Q7Z4U5 140 aa1.61□□□□□ -2.15
VPS13A-210ENST00000471439 OR5D14Q8NGL3 314 aa1.61□□□□□ -2.15
VPS13A-210ENST00000471439 ZNF431Q8TF32 576 aaPredicted RBP1.61□□□□□ -2.15
VPS13A-210ENST00000471439 PRADC1Q9BSG0 188 aa1.61□□□□□ -2.15
VPS13A-210ENST00000471439 ARL6Q9H0F7 186 aa1.61□□□□□ -2.15
VPS13A-210ENST00000471439 SH3BGRL3Q9H299 93 aa1.61□□□□□ -2.15
VPS13A-210ENST00000471439 ARL2BPQ9Y2Y0 163 aa1.61□□□□□ -2.15
VPS13A-210ENST00000471439 RBM7Q9Y580 266 aaKnown RBP1.61□□□□□ -2.15
VPS13A-210ENST00000471439 A0A087WWC5 75 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 IGKV2D-26A0A0A0MRZ7 120 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 C9orf92A6NGG3 77 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 TMEM250H0YL14 139 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 UBDO15205 165 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 FABP7O15540 132 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 ZNF73O43830 326 aaPredicted RBP1.6□□□□□ -2.15
VPS13A-210ENST00000471439 CDS2O95674 445 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 ANGP03950 147 aaKnown RBP1.6□□□□□ -2.15
VPS13A-210ENST00000471439 MT1BP07438 61 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 MP68P56378 58 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 RAB2AP61019 212 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 RHOHQ15669 191 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 C10orf91Q5T1B1 145 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 SPAG11AQ6PDA7 123 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 LYZL2Q7Z4W2 148 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 OR4X1Q8NH49 305 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 MRAP2Q96G30 205 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 HIGD2AQ9BW72 106 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 MIXL1Q9H2W2 232 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 TMEM138Q9NPI0 162 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 UQCC1Q9NVA1 299 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 CCDC167Q9P0B6 97 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 NDUFA12Q9UI09 145 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 NAGKQ9UJ70 344 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 PHLDA3Q9Y5J5 127 aa1.6□□□□□ -2.15
VPS13A-210ENST00000471439 TRBV24-1A0A075B6N3 115 aa1.59□□□□□ -2.15
VPS13A-210ENST00000471439 J3QRE1 110 aa1.59□□□□□ -2.15
VPS13A-210ENST00000471439 SH2D1AO60880 128 aa1.59□□□□□ -2.15
VPS13A-210ENST00000471439 GADD45GO95257 159 aa1.59□□□□□ -2.15
VPS13A-210ENST00000471439 IGLC1P0CG04 106 aa1.59□□□□□ -2.15
VPS13A-210ENST00000471439 LINC00694P0DN24 101 aa1.59□□□□□ -2.15
VPS13A-210ENST00000471439 ORM2P19652 201 aa1.59□□□□□ -2.15
VPS13A-210ENST00000471439 ZNF93P35789 620 aaPredicted RBP1.59□□□□□ -2.15
VPS13A-210ENST00000471439 IFNGR2P38484 337 aa1.59□□□□□ -2.15
VPS13A-210ENST00000471439 UBE2D3P61077 147 aa1.59□□□□□ -2.15
VPS13A-210ENST00000471439 YPEL3P61236 119 aaPredicted RBP1.59□□□□□ -2.15
VPS13A-210ENST00000471439 SUPT4H1P63272 117 aaKnown RBP1.59□□□□□ -2.15
VPS13A-210ENST00000471439 RAB31Q13636 194 aa1.59□□□□□ -2.15
VPS13A-210ENST00000471439 OR8I2Q8N0Y5 310 aa1.59□□□□□ -2.15
VPS13A-210ENST00000471439 KCNIP2Q9NS61 270 aa1.59□□□□□ -2.15
VPS13A-210ENST00000471439 FAM32AQ9Y421 112 aaKnown RBP1.59□□□□□ -2.15
VPS13A-210ENST00000471439 TRAV30A0A087WSZ9 112 aa1.58□□□□□ -2.16
VPS13A-210ENST00000471439 TRBV6-7A0A0A0MS04 114 aa1.58□□□□□ -2.16
VPS13A-210ENST00000471439 LINC00854A0A1B0GVQ3 168 aa1.58□□□□□ -2.16
VPS13A-210ENST00000471439 TRBV6-4A0A1B0GX49 114 aa1.58□□□□□ -2.16
VPS13A-210ENST00000471439 METTL15A6NJ78 407 aa1.58□□□□□ -2.16
VPS13A-210ENST00000471439 TMEM262E9PQX1 116 aa1.58□□□□□ -2.16
VPS13A-210ENST00000471439 ZNF670-ZNF695F2Z2N8 137 aa1.58□□□□□ -2.16
VPS13A-210ENST00000471439 TNFAIP8O95379 198 aa1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms