RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 ZNF80P51504 273 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-209ENST00000438120 MIR7-3HGQ8N6C7 128 aa13.06□□□□□ -0.32
PTPRF-209ENST00000438120 H0YGX0 51 aa13.06□□□□□ -0.32
PTPRF-209ENST00000438120 TMEM263Q8WUH6 116 aaKnown RBP13.06□□□□□ -0.32
PTPRF-209ENST00000438120 FBXL19-AS1Q494R0 122 aa13.06□□□□□ -0.32
PTPRF-209ENST00000438120 COA6Q5JTJ3 125 aaKnown RBP13.06□□□□□ -0.32
PTPRF-209ENST00000438120 HIGD2BQ4VC39 106 aa13.06□□□□□ -0.32
PTPRF-209ENST00000438120 ARHGAP21Q5T5U3 1957 aa13.05□□□□□ -0.32
PTPRF-209ENST00000438120 WNK1Q9H4A3 2382 aa13.04□□□□□ -0.32
PTPRF-209ENST00000438120 COL4A3Q01955 1670 aa13.04□□□□□ -0.32
PTPRF-209ENST00000438120 TMEM89A2RUT3 159 aa13.04□□□□□ -0.32
PTPRF-209ENST00000438120 C1orf229Q6ZS94 237 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-209ENST00000438120 Q6ZTI0 123 aa13.04□□□□□ -0.32
PTPRF-209ENST00000438120 FREM1Q5H8C1 2179 aa13.04□□□□□ -0.32
PTPRF-209ENST00000438120 Q6ZUT4 128 aa13.04□□□□□ -0.32
PTPRF-209ENST00000438120 PRO0255Q9UI72 69 aa13.04□□□□□ -0.32
PTPRF-209ENST00000438120 IGKV2-24A0A0C4DH68 120 aa13.03□□□□□ -0.32
PTPRF-209ENST00000438120 LOXL1Q08397 574 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-209ENST00000438120 TNFRSF13BO14836 293 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-209ENST00000438120 NREPQ16612 68 aa13.03□□□□□ -0.32
PTPRF-209ENST00000438120 LINC01620Q4KN68 170 aa13.03□□□□□ -0.32
PTPRF-209ENST00000438120 C2orf16Q68DN1 1984 aa13.03□□□□□ -0.32
PTPRF-209ENST00000438120 TRAV26-1A0A087WT03 109 aa13.03□□□□□ -0.32
PTPRF-209ENST00000438120 C5orf47Q569G3 176 aa13.03□□□□□ -0.32
PTPRF-209ENST00000438120 PKIGQ9Y2B9 76 aa13.03□□□□□ -0.32
PTPRF-209ENST00000438120 HIVEP2P31629 2446 aa13.02□□□□□ -0.32
PTPRF-209ENST00000438120 ACACBO00763 2458 aa13.02□□□□□ -0.32
PTPRF-209ENST00000438120 E9PLD3 99 aa13.02□□□□□ -0.32
PTPRF-209ENST00000438120 MED14OSP0DP75 135 aa13.02□□□□□ -0.32
PTPRF-209ENST00000438120 WFDC2Q14508 124 aa13.02□□□□□ -0.32
PTPRF-209ENST00000438120 LINC00322Q6ZN03 302 aaPredicted RBP13.02□□□□□ -0.32
PTPRF-209ENST00000438120 PRORYQ9H606 182 aa13.02□□□□□ -0.33
PTPRF-209ENST00000438120 CUL9Q8IWT3 2517 aa13.02□□□□□ -0.33
PTPRF-209ENST00000438120 OTOGLQ3ZCN5 2332 aa13.02□□□□□ -0.33
PTPRF-209ENST00000438120 ODF3BA8MYP8 253 aa13.02□□□□□ -0.33
PTPRF-209ENST00000438120 TM2D2Q9BX73 214 aa13.02□□□□□ -0.33
PTPRF-209ENST00000438120 KLK5Q9Y337 293 aaPredicted RBP13.02□□□□□ -0.33
PTPRF-209ENST00000438120 LGALS9O00182 355 aa13.02□□□□□ -0.33
PTPRF-209ENST00000438120 C20orf203Q8NBC4 194 aa13.02□□□□□ -0.33
PTPRF-209ENST00000438120 CSPG4Q6UVK1 2322 aa13.02□□□□□ -0.33
PTPRF-209ENST00000438120 C19orf71A6NCJ1 209 aa13.01□□□□□ -0.33
PTPRF-209ENST00000438120 INAFM1C9JVW0 142 aa13.01□□□□□ -0.33
PTPRF-209ENST00000438120 IGHV4-31P0DP07 118 aa13.01□□□□□ -0.33
PTPRF-209ENST00000438120 ODF1Q14990 250 aa13.01□□□□□ -0.33
PTPRF-209ENST00000438120 BRWD1-AS2P59051 145 aa13.01□□□□□ -0.33
PTPRF-209ENST00000438120 Q6ZPA2 131 aa13.01□□□□□ -0.33
PTPRF-209ENST00000438120 C11orf45Q8TAV5 145 aa13.01□□□□□ -0.33
PTPRF-209ENST00000438120 IGF1P05019 195 aa13□□□□□ -0.33
PTPRF-209ENST00000438120 NFE4Q86UQ8 179 aa13□□□□□ -0.33
PTPRF-209ENST00000438120 B5MCH6 92 aa13□□□□□ -0.33
PTPRF-209ENST00000438120 NDUFB1O75438 58 aa13□□□□□ -0.33
PTPRF-209ENST00000438120 IGHV1-58A0A0C4DH39 117 aa13□□□□□ -0.33
PTPRF-209ENST00000438120 TRBV6-1A0A0K0K1D8 114 aa13□□□□□ -0.33
PTPRF-209ENST00000438120 LINC00269Q8N2A0 174 aa12.99□□□□□ -0.33
PTPRF-209ENST00000438120 DIRC1Q969H9 104 aa12.99□□□□□ -0.33
PTPRF-209ENST00000438120 C10orf99Q6UWK7 81 aa12.99□□□□□ -0.33
PTPRF-209ENST00000438120 FAM110AQ9BQ89 295 aa12.99□□□□□ -0.33
PTPRF-209ENST00000438120 C11orf1Q9H5F2 150 aa12.98□□□□□ -0.33
PTPRF-209ENST00000438120 DENND4AQ7Z401 1863 aa12.98□□□□□ -0.33
PTPRF-209ENST00000438120 A0A0B4J2C4 111 aa12.98□□□□□ -0.33
PTPRF-209ENST00000438120 CHKB-CPT1BH3BT56 60 aa12.98□□□□□ -0.33
PTPRF-209ENST00000438120 ACYP1P07311 99 aa12.98□□□□□ -0.33
PTPRF-209ENST00000438120 INSL3P51460 131 aa12.98□□□□□ -0.33
PTPRF-209ENST00000438120 FAM222AQ5U5X8 452 aa12.98□□□□□ -0.33
PTPRF-209ENST00000438120 Q6YL49 198 aa12.97□□□□□ -0.33
PTPRF-209ENST00000438120 C20orf173Q96LM9 149 aa12.97□□□□□ -0.33
PTPRF-209ENST00000438120 SPANXDQ9BXN6 97 aa12.97□□□□□ -0.33
PTPRF-209ENST00000438120 WFDC9Q8NEX5 89 aa12.97□□□□□ -0.33
PTPRF-209ENST00000438120 TNRC6BQ9UPQ9 1833 aaKnown RBP12.97□□□□□ -0.33
PTPRF-209ENST00000438120 LINC00482Q8N8I6 264 aa12.97□□□□□ -0.33
PTPRF-209ENST00000438120 PTPN13Q12923 2485 aa12.97□□□□□ -0.33
PTPRF-209ENST00000438120 CXCL5P42830 114 aa12.97□□□□□ -0.33
PTPRF-209ENST00000438120 SS18L2Q9UHA2 77 aa12.97□□□□□ -0.33
PTPRF-209ENST00000438120 C4orf48Q5BLP8 95 aa12.96□□□□□ -0.33
PTPRF-209ENST00000438120 A0A1B0GX51 115 aa12.96□□□□□ -0.33
PTPRF-209ENST00000438120 P0C879 139 aa12.96□□□□□ -0.33
PTPRF-209ENST00000438120 IGKV2D-26A0A0A0MRZ7 120 aa12.95□□□□□ -0.34
PTPRF-209ENST00000438120 NDUFA11Q86Y39 141 aa12.95□□□□□ -0.34
PTPRF-209ENST00000438120 DSCAML1Q8TD84 2053 aa12.95□□□□□ -0.34
PTPRF-209ENST00000438120 CITED1Q99966 193 aa12.95□□□□□ -0.34
PTPRF-209ENST00000438120 PSMB8P28062 276 aa12.95□□□□□ -0.34
PTPRF-209ENST00000438120 SONP18583 2426 aaKnown RBP12.94□□□□□ -0.34
PTPRF-209ENST00000438120 TEN1Q86WV5 123 aa12.94□□□□□ -0.34
PTPRF-209ENST00000438120 C14orf132Q9NPU4 83 aa12.94□□□□□ -0.34
PTPRF-209ENST00000438120 FAM236AA0A1B0GUQ0 79 aa12.94□□□□□ -0.34
PTPRF-209ENST00000438120 FAM236BA0A1B0GV22 79 aa12.94□□□□□ -0.34
PTPRF-209ENST00000438120 TAX1BP3O14907 124 aa12.94□□□□□ -0.34
PTPRF-209ENST00000438120 HIGD1BQ9P298 99 aa12.94□□□□□ -0.34
PTPRF-209ENST00000438120 PTH2Q96A98 100 aa12.94□□□□□ -0.34
PTPRF-209ENST00000438120 REG3AQ06141 175 aa12.94□□□□□ -0.34
PTPRF-209ENST00000438120 OBSL1O75147 1896 aa12.94□□□□□ -0.34
PTPRF-209ENST00000438120 A0A096LNI7 61 aa12.94□□□□□ -0.34
PTPRF-209ENST00000438120 IGLV2-8P01709 118 aa12.94□□□□□ -0.34
PTPRF-209ENST00000438120 DEFB114Q30KQ6 69 aa12.93□□□□□ -0.34
PTPRF-209ENST00000438120 TMEM258P61165 79 aa12.93□□□□□ -0.34
PTPRF-209ENST00000438120 GDF5OSQ5U4N7 250 aa12.93□□□□□ -0.34
PTPRF-209ENST00000438120 H0Y9J4 135 aa12.93□□□□□ -0.34
PTPRF-209ENST00000438120 ZFAND2AQ8N6M9 145 aa12.93□□□□□ -0.34
PTPRF-209ENST00000438120 LINC00467Q9BRT7 94 aa12.92□□□□□ -0.34
PTPRF-209ENST00000438120 TRBV10-1A0A0K0K1A3 114 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms