RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 DUX5Q96PT3 197 aa10.6□□□□□ -0.71
LIG1-202ENST00000427526 SPAG8Q99932 426 aaPredicted RBP10.6□□□□□ -0.71
LIG1-202ENST00000427526 A0A0J9YX75 114 aa10.6□□□□□ -0.71
LIG1-202ENST00000427526 HOXA3O43365 443 aaPredicted RBP10.6□□□□□ -0.71
LIG1-202ENST00000427526 RPL39P62891 51 aaKnown RBP10.6□□□□□ -0.71
LIG1-202ENST00000427526 TMEM141Q96I45 108 aa10.6□□□□□ -0.71
LIG1-202ENST00000427526 KIR2DL4Q99706 377 aa10.6□□□□□ -0.71
LIG1-202ENST00000427526 VPREB3Q9UKI3 123 aa10.6□□□□□ -0.71
LIG1-202ENST00000427526 SDHAF1A6NFY7 115 aa10.59□□□□□ -0.71
LIG1-202ENST00000427526 ZNF688P0C7X2 276 aa10.59□□□□□ -0.71
LIG1-202ENST00000427526 PMVKQ15126 192 aa10.59□□□□□ -0.71
LIG1-202ENST00000427526 MORN3Q6PF18 240 aaPredicted RBP10.59□□□□□ -0.71
LIG1-202ENST00000427526 WFDC11Q8NEX6 87 aa10.59□□□□□ -0.71
LIG1-202ENST00000427526 DEFB104AQ8WTQ1 72 aa10.59□□□□□ -0.71
LIG1-202ENST00000427526 PLEKHB2Q96CS7 222 aa10.59□□□□□ -0.71
LIG1-202ENST00000427526 TIMM17AQ99595 171 aa10.59□□□□□ -0.71
LIG1-202ENST00000427526 MDFICQ9P1T7 246 aa10.59□□□□□ -0.71
LIG1-202ENST00000427526 ZNF469Q96JG9 3925 aaPredicted RBP10.59□□□□□ -0.71
LIG1-202ENST00000427526 H3BMG7 143 aa10.59□□□□□ -0.71
LIG1-202ENST00000427526 GAGE5Q13069 117 aa10.59□□□□□ -0.71
LIG1-202ENST00000427526 GAGE6Q13070 117 aa10.59□□□□□ -0.71
LIG1-202ENST00000427526 PAPPA-AS1Q5QFB9 102 aa10.59□□□□□ -0.71
LIG1-202ENST00000427526 KLHL30-AS1Q8NEE0 82 aa10.59□□□□□ -0.71
LIG1-202ENST00000427526 TLN2Q9Y4G6 2542 aa10.58□□□□□ -0.72
LIG1-202ENST00000427526 F5H697 171 aa10.58□□□□□ -0.72
LIG1-202ENST00000427526 WFDC2Q14508 124 aa10.58□□□□□ -0.72
LIG1-202ENST00000427526 CCDC168Q8NDH2 2452 aa10.58□□□□□ -0.72
LIG1-202ENST00000427526 TRAV12-2A0A075B6T6 113 aa10.58□□□□□ -0.72
LIG1-202ENST00000427526 TMEM89A2RUT3 159 aa10.58□□□□□ -0.72
LIG1-202ENST00000427526 K7EQG2 157 aa10.58□□□□□ -0.72
LIG1-202ENST00000427526 PLA2G2AP14555 144 aa10.58□□□□□ -0.72
LIG1-202ENST00000427526 B5MCH6 92 aa10.58□□□□□ -0.72
LIG1-202ENST00000427526 M0QY20 66 aa10.57□□□□□ -0.72
LIG1-202ENST00000427526 AMTNQ6UX39 209 aa10.57□□□□□ -0.72
LIG1-202ENST00000427526 Q8N1Y9 231 aa10.57□□□□□ -0.72
LIG1-202ENST00000427526 EMP1P54849 157 aa10.57□□□□□ -0.72
LIG1-202ENST00000427526 SNRPD3P62318 126 aaKnown RBP10.57□□□□□ -0.72
LIG1-202ENST00000427526 KMT2BQ9UMN6 2715 aaPredicted RBP10.57□□□□□ -0.72
LIG1-202ENST00000427526 UBE2D1P51668 147 aa10.56□□□□□ -0.72
LIG1-202ENST00000427526 ZNF876PQ49A33 203 aa10.56□□□□□ -0.72
LIG1-202ENST00000427526 SCGB1D4Q6XE38 83 aa10.56□□□□□ -0.72
LIG1-202ENST00000427526 PRO0461Q9UI25 63 aa10.56□□□□□ -0.72
LIG1-202ENST00000427526 IGKV3-20P01619 116 aa10.56□□□□□ -0.72
LIG1-202ENST00000427526 FAM74A4Q5TZK3 123 aa10.56□□□□□ -0.72
LIG1-202ENST00000427526 ZNRF2Q8NHG8 242 aa10.56□□□□□ -0.72
LIG1-202ENST00000427526 ITPR3Q14573 2671 aa10.56□□□□□ -0.72
LIG1-202ENST00000427526 J3QKU1 62 aa10.55□□□□□ -0.72
LIG1-202ENST00000427526 ZNF702PQ9H963 129 aa10.55□□□□□ -0.72
LIG1-202ENST00000427526 A0A0J9YY99 117 aa10.55□□□□□ -0.72
LIG1-202ENST00000427526 CITED1Q99966 193 aa10.55□□□□□ -0.72
LIG1-202ENST00000427526 IGHV1OR15-1A0A075B7D0 117 aa10.55□□□□□ -0.72
LIG1-202ENST00000427526 SPINK8P0C7L1 97 aa10.55□□□□□ -0.72
LIG1-202ENST00000427526 HERVK_113P61574 105 aa10.55□□□□□ -0.72
LIG1-202ENST00000427526 RNF152Q8N8N0 203 aa10.55□□□□□ -0.72
LIG1-202ENST00000427526 SYT8Q8NBV8 401 aa10.55□□□□□ -0.72
LIG1-202ENST00000427526 SRSF9Q13242 221 aaKnown RBP eCLIP10.54□□□□□ -0.72
LIG1-202ENST00000427526 SPINK13Q1W4C9 94 aa10.54□□□□□ -0.72
LIG1-202ENST00000427526 SH2D6Q7Z4S9 175 aa10.54□□□□□ -0.72
LIG1-202ENST00000427526 YAE1D1Q9NRH1 226 aa10.54□□□□□ -0.72
LIG1-202ENST00000427526 HELZ2Q9BYK8 2649 aaKnown RBP10.54□□□□□ -0.72
LIG1-202ENST00000427526 TSPEAR-AS2P59090 65 aa10.54□□□□□ -0.72
LIG1-202ENST00000427526 NSUN5P1Q3KNT7 163 aa10.54□□□□□ -0.72
LIG1-202ENST00000427526 GAGE13Q4V321 117 aa10.54□□□□□ -0.72
LIG1-202ENST00000427526 ZNF256Q9Y2P7 627 aaPredicted RBP10.54□□□□□ -0.72
LIG1-202ENST00000427526 SONP18583 2426 aaKnown RBP10.54□□□□□ -0.72
LIG1-202ENST00000427526 SYNJ2BPP57105 145 aa10.53□□□□□ -0.72
LIG1-202ENST00000427526 P0DMU3 169 aa10.53□□□□□ -0.72
LIG1-202ENST00000427526 FAM231AP0DMU4 169 aa10.53□□□□□ -0.72
LIG1-202ENST00000427526 FAM231CP0DMU5 169 aa10.53□□□□□ -0.72
LIG1-202ENST00000427526 ZNF56Q15929 161 aa10.53□□□□□ -0.72
LIG1-202ENST00000427526 AMELXQ99217 191 aa10.53□□□□□ -0.72
LIG1-202ENST00000427526 INSL3P51460 131 aa10.52□□□□□ -0.72
LIG1-202ENST00000427526 RHOHQ15669 191 aa10.52□□□□□ -0.72
LIG1-202ENST00000427526 TRPT1Q86TN4 253 aaKnown RBP10.52□□□□□ -0.73
LIG1-202ENST00000427526 NFE4Q86UQ8 179 aa10.52□□□□□ -0.73
LIG1-202ENST00000427526 ANAPC13Q9BS18 74 aa10.52□□□□□ -0.73
LIG1-202ENST00000427526 MT-ATP8P03928 68 aa10.52□□□□□ -0.73
LIG1-202ENST00000427526 ETDBQ3ZM63 59 aa10.52□□□□□ -0.73
LIG1-202ENST00000427526 TMEM170BQ5T4T1 132 aa10.52□□□□□ -0.73
LIG1-202ENST00000427526 SLC25A29Q8N8R3 303 aa10.51□□□□□ -0.73
LIG1-202ENST00000427526 OPRPNQ99935 248 aaPredicted RBP10.51□□□□□ -0.73
LIG1-202ENST00000427526 CDIP1Q9H305 208 aa10.51□□□□□ -0.73
LIG1-202ENST00000427526 IGHV3-30P01768 117 aa10.5□□□□□ -0.73
LIG1-202ENST00000427526 IGHV3-30-5P0DP03 117 aa10.5□□□□□ -0.73
LIG1-202ENST00000427526 SPXQ9BT56 116 aa10.5□□□□□ -0.73
LIG1-202ENST00000427526 PDZD2O15018 2839 aa10.5□□□□□ -0.73
LIG1-202ENST00000427526 HOXD3P31249 432 aaPredicted RBP10.5□□□□□ -0.73
LIG1-202ENST00000427526 C20orf203Q8NBC4 194 aa10.5□□□□□ -0.73
LIG1-202ENST00000427526 FLNAP21333 2647 aaKnown RBP10.5□□□□□ -0.73
LIG1-202ENST00000427526 ELANEP08246 267 aa10.5□□□□□ -0.73
LIG1-202ENST00000427526 NDUFA11Q86Y39 141 aa10.5□□□□□ -0.73
LIG1-202ENST00000427526 RAX2Q96IS3 184 aa10.5□□□□□ -0.73
LIG1-202ENST00000427526 C1QTNF4Q9BXJ3 329 aa10.5□□□□□ -0.73
LIG1-202ENST00000427526 J3QQQ9 107 aa10.49□□□□□ -0.73
LIG1-202ENST00000427526 UBE2D3P61077 147 aa10.49□□□□□ -0.73
LIG1-202ENST00000427526 UBE2D2P62837 147 aa10.49□□□□□ -0.73
LIG1-202ENST00000427526 UBE2E2Q96LR5 201 aa10.49□□□□□ -0.73
LIG1-202ENST00000427526 ITPR2Q14571 2701 aa10.49□□□□□ -0.73
LIG1-202ENST00000427526 I3L3M4 83 aa10.49□□□□□ -0.73
LIG1-202ENST00000427526 RBMY1A1P0DJD3 496 aaKnown RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms