RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 KRTAP10-10P60014 251 aa1.84□□□□□ -2.11
CCDC88A-205ENST00000426576 TWIST1Q15672 202 aa1.84□□□□□ -2.11
CCDC88A-205ENST00000426576 ZNF506Q5JVG8 444 aa1.84□□□□□ -2.11
CCDC88A-205ENST00000426576 AK3Q9UIJ7 227 aa1.84□□□□□ -2.11
CCDC88A-205ENST00000426576 PSME4Q14997 1843 aa1.84□□□□□ -2.11
CCDC88A-205ENST00000426576 H3BP45 60 aa1.84□□□□□ -2.11
CCDC88A-205ENST00000426576 H3F3AP84243 136 aa1.84□□□□□ -2.11
CCDC88A-205ENST00000426576 WHAMMP3Q1A5X7 153 aa1.84□□□□□ -2.11
CCDC88A-205ENST00000426576 TRPT1Q86TN4 253 aaKnown RBP1.84□□□□□ -2.11
CCDC88A-205ENST00000426576 CCL28Q9NRJ3 127 aa1.84□□□□□ -2.11
CCDC88A-205ENST00000426576 MRPL35Q9NZE8 188 aaKnown RBP1.84□□□□□ -2.11
CCDC88A-205ENST00000426576 LHFPL6Q9Y693 200 aa1.84□□□□□ -2.11
CCDC88A-205ENST00000426576 CELSR2Q9HCU4 2923 aa1.84□□□□□ -2.11
CCDC88A-205ENST00000426576 NAP1L6A6NFF2 107 aa1.84□□□□□ -2.12
CCDC88A-205ENST00000426576 UPK1BO75841 260 aa1.84□□□□□ -2.12
CCDC88A-205ENST00000426576 IFI6P09912 130 aa1.84□□□□□ -2.12
CCDC88A-205ENST00000426576 RPS11P62280 158 aaKnown RBP eCLIP1.84□□□□□ -2.12
CCDC88A-205ENST00000426576 RBX1P62877 108 aa1.84□□□□□ -2.12
CCDC88A-205ENST00000426576 MUSTN1Q8IVN3 82 aa1.84□□□□□ -2.12
CCDC88A-205ENST00000426576 AMN1Q8IY45 258 aa1.84□□□□□ -2.12
CCDC88A-205ENST00000426576 TMEM191AQ9H0A3 160 aa1.84□□□□□ -2.12
CCDC88A-205ENST00000426576 KRTAP4-8A0A0G2JLE6 195 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 H3BVH4 76 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 ZNF485Q8NCK3 441 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 PYURFQ96I23 114 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 GFI1Q99684 422 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 TNFRSF12AQ9NP84 129 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 PNRC2Q9NPJ4 139 aaKnown RBP1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 VPS13BQ7Z7G8 4022 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 FAT2Q9NYQ8 4349 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 IGKV1-9A0A0C4DH69 117 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 FABP5P3A8MUU1 101 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 DNAL4O96015 105 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 SCGB1C2P0DMR2 95 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 HIST1H1DP16402 221 aaKnown RBP1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 AKR1D1P51857 326 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 GOLT1AQ6ZVE7 132 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 Q6ZVQ6 151 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 ST20Q9HBF5 79 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 HCFC1P51610 2035 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 TMEM233B4DJY2 109 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 TSTD3H0UI37 97 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 H3BNG1 76 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 SLC17A3O00476 420 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 CCL25O15444 150 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 LTAP01374 205 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 FAM90A14PP0C7W9 464 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 FGF7P21781 194 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 TMEM50BP56557 158 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 YPEL3P61236 119 aaPredicted RBP1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 AK6Q9Y3D8 172 aaKnown RBP1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 GRIFINA4D1Z8 144 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 TMEM250H0YL14 139 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 LST1O00453 97 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 SSNA1O43805 119 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 IGLV6-57P01721 117 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 IGFL4Q6B9Z1 124 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 DMKNQ6E0U4 476 aaPredicted RBP1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 UNQ9165/PRO28630Q6UXU0 137 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 LINC00518Q8N0U6 118 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 TNXBP22105 4242 aa1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 HELZP42694 1942 aaKnown RBP1.83□□□□□ -2.12
CCDC88A-205ENST00000426576 PDCD11Q14690 1871 aaKnown RBP1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 A0A096LNT2 108 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 A0A1W2PP11 408 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 K7EQG2 157 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 C8orf88P0DMB2 117 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 TMEM136Q6ZRR5 245 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 LINC00305Q7Z4B0 112 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 CHCHD10Q8WYQ3 142 aaPredicted RBP1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 IFI27L2Q9H2X8 130 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 SAV1Q9H4B6 383 aaPredicted RBP1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 FLVCR2Q9UPI3 526 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 TMEM238LA0A1B0GVL6 79 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 LINC00862A6NCI5 91 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 FOXA3P55318 350 aaPredicted RBP1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 HBBP68871 147 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 NEDD8Q15843 81 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 THAP6Q8TBB0 222 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 CMC2Q9NRP2 79 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 CYSLTR1Q9Y271 337 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 KLF12Q9Y4X4 402 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 PGLYRP1O75594 196 aaPredicted RBP1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 SIX6O95475 246 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 PRKACGP22612 351 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 Q8NDZ9 215 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 OR10AC1Q8NH08 325 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 DNAJC15Q9Y5T4 150 aa1.82□□□□□ -2.12
CCDC88A-205ENST00000426576 TRBV7-3A0A075B6L6 115 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 NUPR1O60356 82 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 NDUFA3O95167 84 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 EWSR1Q01844 656 aaKnown RBP eCLIP1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 LINC01554Q52M75 96 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 GCSAMLQ5JQS6 135 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 C8orf59Q8N0T1 100 aaPredicted RBP1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 FAM3DQ96BQ1 224 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 A0A0J9YX75 114 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 MEF2DQ14814 521 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 NMSQ5H8A3 153 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 EPGNQ6UW88 154 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms