RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 UFSP1Q6NVU6 142 aa7.12□□□□□ -1.27
CD44-207ENST00000425428 CEMP1Q6PRD7 247 aaPredicted RBP7.12□□□□□ -1.27
CD44-207ENST00000425428 MUC7Q8TAX7 377 aa7.12□□□□□ -1.27
CD44-207ENST00000425428 PRELID3AQ96N28 172 aa7.12□□□□□ -1.27
CD44-207ENST00000425428 TENM3Q9P273 2699 aa7.12□□□□□ -1.27
CD44-207ENST00000425428 PHOX2AO14813 284 aa7.11□□□□□ -1.27
CD44-207ENST00000425428 TCAPO15273 167 aa7.11□□□□□ -1.27
CD44-207ENST00000425428 TMEM97Q5BJF2 176 aa7.11□□□□□ -1.27
CD44-207ENST00000425428 MAP1LC3AQ9H492 121 aa7.11□□□□□ -1.27
CD44-207ENST00000425428 TRAV26-2A0A0B4J265 109 aa7.1□□□□□ -1.27
CD44-207ENST00000425428 GAGE12JA6NER3 117 aa7.1□□□□□ -1.27
CD44-207ENST00000425428 COLCA2A8K830 154 aa7.1□□□□□ -1.27
CD44-207ENST00000425428 M0QY20 66 aa7.1□□□□□ -1.27
CD44-207ENST00000425428 GAGE1Q13065 139 aa7.1□□□□□ -1.27
CD44-207ENST00000425428 GAGE4Q13068 117 aa7.1□□□□□ -1.27
CD44-207ENST00000425428 GAGE5Q13069 117 aa7.1□□□□□ -1.27
CD44-207ENST00000425428 GAGE13Q4V321 117 aa7.1□□□□□ -1.27
CD44-207ENST00000425428 DAZ4Q86SG3 579 aaKnown RBP7.1□□□□□ -1.27
CD44-207ENST00000425428 ZNRF2Q8NHG8 242 aa7.1□□□□□ -1.27
CD44-207ENST00000425428 RNF185Q96GF1 192 aa7.1□□□□□ -1.27
CD44-207ENST00000425428 C20orf78Q9BR46 151 aa7.1□□□□□ -1.27
CD44-207ENST00000425428 DAZ3Q9NR90 486 aaKnown RBP7.1□□□□□ -1.27
CD44-207ENST00000425428 PRKDCP78527 4128 aaKnown RBP7.1□□□□□ -1.27
CD44-207ENST00000425428 PMCHP20382 165 aa7.1□□□□□ -1.27
CD44-207ENST00000425428 LINC00315P59091 139 aa7.1□□□□□ -1.27
CD44-207ENST00000425428 NEGR1Q7Z3B1 354 aa7.1□□□□□ -1.27
CD44-207ENST00000425428 YPEL4Q96NS1 127 aa7.1□□□□□ -1.27
CD44-207ENST00000425428 KIR2DL4Q99706 377 aa7.1□□□□□ -1.27
CD44-207ENST00000425428 C3orf84H3BNL1 204 aa7.09□□□□□ -1.27
CD44-207ENST00000425428 VCYO14598 125 aa7.09□□□□□ -1.27
CD44-207ENST00000425428 TNFRSF6BO95407 300 aa7.09□□□□□ -1.27
CD44-207ENST00000425428 NCR2O95944 276 aa7.09□□□□□ -1.27
CD44-207ENST00000425428 SUMO2P61956 95 aaKnown RBP7.09□□□□□ -1.27
CD44-207ENST00000425428 KIAA1644Q3SXP7 199 aa7.09□□□□□ -1.27
CD44-207ENST00000425428 NEXN-AS1Q8NBZ9 246 aa7.09□□□□□ -1.27
CD44-207ENST00000425428 ATP6V0E2Q8NHE4 81 aa7.09□□□□□ -1.27
CD44-207ENST00000425428 DNAH9Q9NYC9 4486 aa7.09□□□□□ -1.27
CD44-207ENST00000425428 COL7A1Q02388 2944 aa7.09□□□□□ -1.27
CD44-207ENST00000425428 HUWE1Q7Z6Z7 4374 aaKnown RBP7.09□□□□□ -1.28
CD44-207ENST00000425428 C1orf196B1AJZ1 125 aa7.08□□□□□ -1.28
CD44-207ENST00000425428 SMKR1H3BMG3 65 aa7.08□□□□□ -1.28
CD44-207ENST00000425428 G0S2P27469 103 aa7.08□□□□□ -1.28
CD44-207ENST00000425428 FCER1GP30273 86 aa7.08□□□□□ -1.28
CD44-207ENST00000425428 CCL18P55774 89 aa7.08□□□□□ -1.28
CD44-207ENST00000425428 RAB5BP61020 215 aa7.08□□□□□ -1.28
CD44-207ENST00000425428 COTL1Q14019 142 aa7.08□□□□□ -1.28
CD44-207ENST00000425428 Q6ZSN1 163 aa7.08□□□□□ -1.28
CD44-207ENST00000425428 PRSS3P2Q8NHM4 247 aa7.08□□□□□ -1.28
CD44-207ENST00000425428 TRBV6-5A0A0K0K1A5 114 aa7.08□□□□□ -1.28
CD44-207ENST00000425428 SDHAF1A6NFY7 115 aa7.08□□□□□ -1.28
CD44-207ENST00000425428 I3L3M4 83 aa7.08□□□□□ -1.28
CD44-207ENST00000425428 TRGC2P03986 189 aa7.08□□□□□ -1.28
CD44-207ENST00000425428 SMAGPQ0VAQ4 97 aa7.08□□□□□ -1.28
CD44-207ENST00000425428 RPL39LQ96EH5 51 aaKnown RBP7.08□□□□□ -1.28
CD44-207ENST00000425428 NXT2Q9NPJ8 142 aaKnown RBP7.08□□□□□ -1.28
CD44-207ENST00000425428 STAB2Q8WWQ8 2551 aa7.07□□□□□ -1.28
CD44-207ENST00000425428 P0DMU3 169 aa7.07□□□□□ -1.28
CD44-207ENST00000425428 FAM231AP0DMU4 169 aa7.07□□□□□ -1.28
CD44-207ENST00000425428 FAM231CP0DMU5 169 aa7.07□□□□□ -1.28
CD44-207ENST00000425428 ZFAND6Q6FIF0 208 aa7.07□□□□□ -1.28
CD44-207ENST00000425428 UBE2DNLQ8IWF7 75 aa7.07□□□□□ -1.28
CD44-207ENST00000425428 TMEM18Q96B42 140 aa7.07□□□□□ -1.28
CD44-207ENST00000425428 VSIG2Q96IQ7 327 aa7.07□□□□□ -1.28
CD44-207ENST00000425428 GTSF1LQ9H1H1 148 aa7.07□□□□□ -1.28
CD44-207ENST00000425428 TRAV8-6A0A0B4J262 113 aa7.06□□□□□ -1.28
CD44-207ENST00000425428 LOC389332A0A1B0GUA5 103 aa7.06□□□□□ -1.28
CD44-207ENST00000425428 UBE2L6O14933 153 aa7.06□□□□□ -1.28
CD44-207ENST00000425428 UBE2D3P61077 147 aa7.06□□□□□ -1.28
CD44-207ENST00000425428 PKIAP61925 76 aa7.06□□□□□ -1.28
CD44-207ENST00000425428 UBE2D2P62837 147 aa7.06□□□□□ -1.28
CD44-207ENST00000425428 FA2HQ7L5A8 372 aa7.06□□□□□ -1.28
CD44-207ENST00000425428 ALKBH7Q9BT30 221 aaPredicted RBP7.06□□□□□ -1.28
CD44-207ENST00000425428 A0A096LPF7 62 aa7.05□□□□□ -1.28
CD44-207ENST00000425428 LOC100131303A0A0U1RQF7 123 aa7.05□□□□□ -1.28
CD44-207ENST00000425428 K7EMI3 77 aa7.05□□□□□ -1.28
CD44-207ENST00000425428 NPYP01303 97 aa7.05□□□□□ -1.28
CD44-207ENST00000425428 BAGE3Q86Y29 109 aa7.05□□□□□ -1.28
CD44-207ENST00000425428 SMIM2Q9BVW6 85 aa7.05□□□□□ -1.28
CD44-207ENST00000425428 TRBV25-1A0A075B6N4 114 aa7.05□□□□□ -1.28
CD44-207ENST00000425428 RPL32P62910 135 aaKnown RBP7.05□□□□□ -1.28
CD44-207ENST00000425428 NRACQ8N912 160 aa7.05□□□□□ -1.28
CD44-207ENST00000425428 TMEM70Q9BUB7 260 aa7.05□□□□□ -1.28
CD44-207ENST00000425428 IGHV1-24A0A0C4DH33 117 aa7.04□□□□□ -1.28
CD44-207ENST00000425428 TRBV27A0A0K0K1C4 114 aa7.04□□□□□ -1.28
CD44-207ENST00000425428 AMTP48728 403 aa7.04□□□□□ -1.28
CD44-207ENST00000425428 ORMDL2Q53FV1 153 aa7.04□□□□□ -1.28
CD44-207ENST00000425428 Q8N8P6 123 aa7.04□□□□□ -1.28
CD44-207ENST00000425428 TGP01266 2768 aa7.03□□□□□ -1.28
CD44-207ENST00000425428 IGHV3-38A0A0C4DH36 116 aa7.03□□□□□ -1.28
CD44-207ENST00000425428 LINC01549A6NIU2 74 aa7.03□□□□□ -1.28
CD44-207ENST00000425428 TIRAPP58753 221 aa7.03□□□□□ -1.28
CD44-207ENST00000425428 PRSS47A8MTI9 375 aa7.03□□□□□ -1.28
CD44-207ENST00000425428 S100A6P06703 90 aa7.03□□□□□ -1.28
CD44-207ENST00000425428 POLR2KP53803 58 aaKnown RBP7.03□□□□□ -1.28
CD44-207ENST00000425428 LELP1Q5T871 98 aa7.03□□□□□ -1.28
CD44-207ENST00000425428 CHCHD5Q9BSY4 110 aa7.03□□□□□ -1.28
CD44-207ENST00000425428 TRBV6-8A0A0A6YYG3 113 aa7.02□□□□□ -1.29
CD44-207ENST00000425428 LAGE3Q14657 143 aa7.02□□□□□ -1.29
CD44-207ENST00000425428 AMMECR1LQ6DCA0 310 aa7.02□□□□□ -1.29
CD44-207ENST00000425428 RNASEKQ6P5S7 137 aaKnown RBP7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms