RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 TRBV10-2A0A0K0K1G8 114 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 H3BT86 120 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 H3BVH4 76 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 ATOX1O00244 68 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 PPP1R17O96001 155 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 IGHV3-53P01767 116 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 CRYGDP07320 174 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 LINC00694P0DN24 101 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 CRYGAP11844 174 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 COX7CP15954 63 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 IFI27P40305 119 aaPredicted RBP2.43□□□□□ -2.02
VPS54-204ENST00000416400 DSCR4P56555 118 aaPredicted RBP2.43□□□□□ -2.02
VPS54-204ENST00000416400 HERVK_113P63121 156 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 SCGB1D4Q6XE38 83 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 LINC00304Q8N9R0 145 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 CARD19Q96LW7 228 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 OTORQ9NRC9 128 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 PRO1854Q9UHT4 67 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 R4GN34 69 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 SEC16AO15027 2179 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 MDC1Q14676 2089 aaKnown RBP2.42□□□□□ -2.02
VPS54-204ENST00000416400 IGHV3OR15-7A0A075B7D8 119 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 TRAV8-1A0A0A6YYK1 113 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 TRAV4A0A0B4J268 109 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 A6NED7 52 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 C17orf98A8MV24 154 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 H3BMM0 161 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 NDUFC2O95298 119 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 TCRAP04437 139 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 IGLC6P0CF74 106 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 CGB3P0DN86 165 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 CGB7P0DN87 165 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 CYBAP13498 195 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 SLC25A16P16260 332 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 INSL3P51460 131 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 UBE2D1P51668 147 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 ZNF137PP52743 207 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 KRTAP10-10P60014 251 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 CCL8P80075 99 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 MRPS36P82909 103 aaKnown RBP2.42□□□□□ -2.02
VPS54-204ENST00000416400 PRCDQ00LT1 54 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 DIAPH2-AS1Q14236 149 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 SPRNQ5BIV9 151 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 DEFB121Q5J5C9 76 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 Q6ZQT7 251 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 AAED1Q7RTV5 226 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 ADM2Q7Z4H4 148 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 Q8N8P6 123 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 UBE2WQ96B02 151 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 ZC2HC1AQ96GY0 325 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 FAM167A-AS1Q96KT0 104 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 TMEM14BQ9NUH8 114 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 TMEM14CQ9P0S9 112 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 CHD3Q12873 2000 aaKnown RBP2.42□□□□□ -2.02
VPS54-204ENST00000416400 LCTP09848 1927 aa2.42□□□□□ -2.02
VPS54-204ENST00000416400 ZNF106Q9H2Y7 1883 aaKnown RBP2.41□□□□□ -2.02
VPS54-204ENST00000416400 XIRP1Q702N8 1843 aaKnown RBP2.41□□□□□ -2.02
VPS54-204ENST00000416400 IGKV2-24A0A0C4DH68 120 aa2.41□□□□□ -2.02
VPS54-204ENST00000416400 TRBV30A0A0K0K1B3 111 aa2.41□□□□□ -2.02
VPS54-204ENST00000416400 D6R8Y8 96 aa2.41□□□□□ -2.02
VPS54-204ENST00000416400 F8VRH5 84 aa2.41□□□□□ -2.02
VPS54-204ENST00000416400 K7ERJ3 54 aa2.41□□□□□ -2.02
VPS54-204ENST00000416400 RBP4P02753 201 aa2.41□□□□□ -2.02
VPS54-204ENST00000416400 CD7P09564 240 aa2.41□□□□□ -2.02
VPS54-204ENST00000416400 HRES1P13985 223 aa2.41□□□□□ -2.02
VPS54-204ENST00000416400 RPL7P18124 248 aaKnown RBP2.41□□□□□ -2.02
VPS54-204ENST00000416400 KRTAP10-1P60331 282 aa2.41□□□□□ -2.02
VPS54-204ENST00000416400 GNG5P63218 68 aa2.41□□□□□ -2.02
VPS54-204ENST00000416400 ZNF56Q15929 161 aa2.41□□□□□ -2.02
VPS54-204ENST00000416400 C2orf82Q6UX34 121 aa2.41□□□□□ -2.02
VPS54-204ENST00000416400 NDUFA11Q86Y39 141 aa2.41□□□□□ -2.02
VPS54-204ENST00000416400 TMEM75Q8N9X5 138 aa2.41□□□□□ -2.02
VPS54-204ENST00000416400 MYO16Q9Y6X6 1858 aa2.41□□□□□ -2.02
VPS54-204ENST00000416400 TNS1Q9HBL0 1735 aaKnown RBP2.4□□□□□ -2.02
VPS54-204ENST00000416400 TRAV13-1A0A0B4J241 112 aa2.4□□□□□ -2.03
VPS54-204ENST00000416400 TRAV17A0A0B4J275 112 aa2.4□□□□□ -2.03
VPS54-204ENST00000416400 OVOL1O14753 267 aa2.4□□□□□ -2.03
VPS54-204ENST00000416400 CCL16O15467 120 aa2.4□□□□□ -2.03
VPS54-204ENST00000416400 BCE1O60756 84 aa2.4□□□□□ -2.03
VPS54-204ENST00000416400 MRPL33O75394 65 aaKnown RBP2.4□□□□□ -2.03
VPS54-204ENST00000416400 TCL1BO95988 128 aa2.4□□□□□ -2.03
VPS54-204ENST00000416400 COX6A1P12074 109 aa2.4□□□□□ -2.03
VPS54-204ENST00000416400 MRPL51Q4U2R6 128 aaKnown RBP2.4□□□□□ -2.03
VPS54-204ENST00000416400 TMEM155Q4W5P6 130 aa2.4□□□□□ -2.03
VPS54-204ENST00000416400 LINC00305Q7Z4B0 112 aa2.4□□□□□ -2.03
VPS54-204ENST00000416400 PLEKHB2Q96CS7 222 aa2.4□□□□□ -2.03
VPS54-204ENST00000416400 DPH3Q96FX2 82 aa2.4□□□□□ -2.03
VPS54-204ENST00000416400 ODF3Q96PU9 254 aa2.4□□□□□ -2.03
VPS54-204ENST00000416400 B9D2Q9BPU9 175 aa2.4□□□□□ -2.03
VPS54-204ENST00000416400 CCL26Q9Y258 94 aa2.4□□□□□ -2.03
VPS54-204ENST00000416400 TRPM7Q96QT4 1865 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 HEATR5AQ86XA9 2040 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 ADAMTSL1Q8N6G6 1762 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 ZNF815PA8K554 130 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 ARMS2P0C7Q2 107 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 PYYP10082 97 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 DEFA4P12838 97 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 PSMB8P28062 276 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 PDE6HQ13956 83 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 KRTAP25-1Q3LHN0 102 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 184.7 ms