RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 ZNF292O60281 2723 aa4.23□□□□□ -1.73
CCDC88A-203ENST00000412148 IGHV1-58A0A0C4DH39 117 aa4.23□□□□□ -1.73
CCDC88A-203ENST00000412148 F6UB75 175 aa4.23□□□□□ -1.73
CCDC88A-203ENST00000412148 IGHV4-39P01824 125 aa4.23□□□□□ -1.73
CCDC88A-203ENST00000412148 MT-ATP8P03928 68 aa4.23□□□□□ -1.73
CCDC88A-203ENST00000412148 LINC01620Q4KN68 170 aa4.23□□□□□ -1.73
CCDC88A-203ENST00000412148 YAE1D1Q9NRH1 226 aa4.23□□□□□ -1.73
CCDC88A-203ENST00000412148 MUC3AQ02505 3323 aa4.23□□□□□ -1.73
CCDC88A-203ENST00000412148 DMXL2Q8TDJ6 3036 aa4.22□□□□□ -1.73
CCDC88A-203ENST00000412148 ANKHD1Q8IWZ3 2542 aaKnown RBP4.22□□□□□ -1.73
CCDC88A-203ENST00000412148 ZFAND6Q6FIF0 208 aa4.22□□□□□ -1.73
CCDC88A-203ENST00000412148 Q8N1Y9 231 aa4.22□□□□□ -1.73
CCDC88A-203ENST00000412148 UBTD1Q9HAC8 227 aa4.22□□□□□ -1.73
CCDC88A-203ENST00000412148 HRNRQ86YZ3 2850 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-203ENST00000412148 NACAE9PAV3 2078 aa4.22□□□□□ -1.73
CCDC88A-203ENST00000412148 MUSTN1Q8IVN3 82 aa4.22□□□□□ -1.73
CCDC88A-203ENST00000412148 ABCA2Q9BZC7 2435 aa4.21□□□□□ -1.73
CCDC88A-203ENST00000412148 TRAV12-3A0A0B4J271 114 aa4.21□□□□□ -1.73
CCDC88A-203ENST00000412148 F5H697 171 aa4.21□□□□□ -1.73
CCDC88A-203ENST00000412148 IGHV3-30-3P0DP02 117 aa4.21□□□□□ -1.73
CCDC88A-203ENST00000412148 MIAQ16674 131 aa4.21□□□□□ -1.73
CCDC88A-203ENST00000412148 JPT2Q9H910 190 aa4.21□□□□□ -1.73
CCDC88A-203ENST00000412148 CACNA1HO95180 2353 aa4.21□□□□□ -1.74
CCDC88A-203ENST00000412148 AKAP13Q12802 2813 aa4.21□□□□□ -1.74
CCDC88A-203ENST00000412148 TRAV26-1A0A087WT03 109 aa4.21□□□□□ -1.74
CCDC88A-203ENST00000412148 C9JAW5 83 aa4.21□□□□□ -1.74
CCDC88A-203ENST00000412148 H3BUX3 64 aa4.21□□□□□ -1.74
CCDC88A-203ENST00000412148 DSCR9P59020 149 aa4.21□□□□□ -1.74
CCDC88A-203ENST00000412148 ZNF56Q15929 161 aa4.21□□□□□ -1.74
CCDC88A-203ENST00000412148 TEX29Q8N6K0 151 aa4.21□□□□□ -1.74
CCDC88A-203ENST00000412148 VSIG2Q96IQ7 327 aa4.21□□□□□ -1.74
CCDC88A-203ENST00000412148 ANKRD11Q6UB99 2663 aaPredicted RBP4.21□□□□□ -1.74
CCDC88A-203ENST00000412148 CACNA1BQ00975 2339 aa4.21□□□□□ -1.74
CCDC88A-203ENST00000412148 BEAN1Q3B7T3 259 aa4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 COPS9Q8WXC6 57 aa4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 J3QLI3 93 aa4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 NDUFA1O15239 70 aa4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 ACYP1P07311 99 aa4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 MSMBP08118 114 aa4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 ELANEP08246 267 aa4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 COX6CP09669 75 aa4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 DEFB1P60022 68 aa4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 IMUPQ9GZP8 106 aa4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 CSDC2Q9Y534 153 aaKnown RBP4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 IGHV4-61A0A0C4DH41 118 aa4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 A0A0J9YXV3 536 aa4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 LST1O00453 97 aa4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 SPRY2O43597 315 aa4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 IGHV4-38-2P0DP08 117 aa4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 BEX4Q9NWD9 120 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 UBE2D4Q9Y2X8 147 aa4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 ICOSQ9Y6W8 199 aa4.2□□□□□ -1.74
CCDC88A-203ENST00000412148 DCHS2Q6V1P9 2916 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 ACACAQ13085 2346 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 TRBV7-7A0A0K0K1E9 115 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 H3BMM0 161 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 TRIAP1O43715 76 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 IGHV3-11P01762 117 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 EMP1P54849 157 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 BLCAPP62952 87 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 GAGE5Q13069 117 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 GAGE6Q13070 117 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 SDIM1Q6ZPB5 146 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 TMEM61Q8N0U2 210 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 UBE2WQ96B02 151 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 UBE2E2Q96LR5 201 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 CHCHD7Q9BUK0 85 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 LINC00527Q9UJ94 153 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 IGLV5-39A0A0G2JS06 123 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 B4DSR2 109 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 IGHV3-53P01767 116 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 NHLRC4P0CG21 123 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 CD28P10747 220 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 BRD3OSQ6XYD6 125 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 ANAPC13Q9BS18 74 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 PRRC2AP48634 2157 aaKnown RBP4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 ABCA4P78363 2273 aa4.19□□□□□ -1.74
CCDC88A-203ENST00000412148 H7C423 109 aa4.18□□□□□ -1.74
CCDC88A-203ENST00000412148 SNCGO76070 127 aa4.18□□□□□ -1.74
CCDC88A-203ENST00000412148 NDUFV3P56181 108 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-203ENST00000412148 ZNF415Q09FC8 603 aa4.18□□□□□ -1.74
CCDC88A-203ENST00000412148 GAGE2BQ13066 116 aa4.18□□□□□ -1.74
CCDC88A-203ENST00000412148 GAGE2EQ4V326 116 aa4.18□□□□□ -1.74
CCDC88A-203ENST00000412148 FAM74A4Q5TZK3 123 aa4.18□□□□□ -1.74
CCDC88A-203ENST00000412148 GAGE2DQ9UEU5 116 aa4.18□□□□□ -1.74
CCDC88A-203ENST00000412148 NDUFA12Q9UI09 145 aa4.18□□□□□ -1.74
CCDC88A-203ENST00000412148 SMG1Q96Q15 3661 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-203ENST00000412148 BOD1L1Q8NFC6 3051 aa4.18□□□□□ -1.74
CCDC88A-203ENST00000412148 DMXL1Q9Y485 3027 aa4.18□□□□□ -1.74
CCDC88A-203ENST00000412148 MGAQ8IWI9 3026 aa4.18□□□□□ -1.74
CCDC88A-203ENST00000412148 TRAV8-4A0A0B4J246 113 aa4.18□□□□□ -1.74
CCDC88A-203ENST00000412148 NTN5Q8WTR8 489 aaPredicted RBP4.18□□□□□ -1.74
CCDC88A-203ENST00000412148 CNOT1A5YKK6 2376 aaKnown RBP4.18□□□□□ -1.74
CCDC88A-203ENST00000412148 FAM229AH3BQW9 127 aa4.17□□□□□ -1.74
CCDC88A-203ENST00000412148 RS1O15537 224 aa4.17□□□□□ -1.74
CCDC88A-203ENST00000412148 FSHBP01225 129 aa4.17□□□□□ -1.74
CCDC88A-203ENST00000412148 SHISA2Q6UWI4 295 aa4.17□□□□□ -1.74
CCDC88A-203ENST00000412148 Q8N2B8 174 aa4.17□□□□□ -1.74
CCDC88A-203ENST00000412148 WFDC12Q8WWY7 111 aa4.17□□□□□ -1.74
CCDC88A-203ENST00000412148 OPRPNQ99935 248 aaPredicted RBP4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms