RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 K7EMI3 77 aa4.82□□□□□ -1.64
LIMA1-202ENST00000394943 M0R036 132 aa4.82□□□□□ -1.64
LIMA1-202ENST00000394943 PPP1R17O96001 155 aa4.82□□□□□ -1.64
LIMA1-202ENST00000394943 DNAH10OSP0CZ25 163 aa4.82□□□□□ -1.64
LIMA1-202ENST00000394943 P0DMU3 169 aa4.82□□□□□ -1.64
LIMA1-202ENST00000394943 FAM231AP0DMU4 169 aa4.82□□□□□ -1.64
LIMA1-202ENST00000394943 FAM231CP0DMU5 169 aa4.82□□□□□ -1.64
LIMA1-202ENST00000394943 MRPL23Q16540 153 aaKnown RBP4.82□□□□□ -1.64
LIMA1-202ENST00000394943 SUMO4Q6EEV6 95 aa4.82□□□□□ -1.64
LIMA1-202ENST00000394943 C14orf178Q8N769 122 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-202ENST00000394943 C20orf78Q9BR46 151 aa4.82□□□□□ -1.64
LIMA1-202ENST00000394943 RYR3Q15413 4870 aa4.81□□□□□ -1.64
LIMA1-202ENST00000394943 PPBPP02775 128 aa4.81□□□□□ -1.64
LIMA1-202ENST00000394943 ELOBQ15370 118 aa4.81□□□□□ -1.64
LIMA1-202ENST00000394943 LYPD5Q6UWN5 251 aa4.81□□□□□ -1.64
LIMA1-202ENST00000394943 DAZ4Q86SG3 579 aaKnown RBP4.81□□□□□ -1.64
LIMA1-202ENST00000394943 ZNRF2Q8NHG8 242 aa4.81□□□□□ -1.64
LIMA1-202ENST00000394943 DAZ3Q9NR90 486 aaKnown RBP4.81□□□□□ -1.64
LIMA1-202ENST00000394943 ATRAIDQ6UW56 229 aa4.81□□□□□ -1.64
LIMA1-202ENST00000394943 PRADC1Q9BSG0 188 aa4.81□□□□□ -1.64
LIMA1-202ENST00000394943 TRGV2A0A075B6R0 118 aa4.81□□□□□ -1.64
LIMA1-202ENST00000394943 H7C1H1 209 aa4.81□□□□□ -1.64
LIMA1-202ENST00000394943 APOC3P02656 99 aa4.81□□□□□ -1.64
LIMA1-202ENST00000394943 LELP1Q5T871 98 aa4.81□□□□□ -1.64
LIMA1-202ENST00000394943 SPANXN1Q5VSR9 72 aa4.81□□□□□ -1.64
LIMA1-202ENST00000394943 NIT2Q9NQR4 276 aa4.81□□□□□ -1.64
LIMA1-202ENST00000394943 TRBV7-3A0A075B6L6 115 aa4.8□□□□□ -1.64
LIMA1-202ENST00000394943 IQCJQ1A5X6 159 aa4.8□□□□□ -1.64
LIMA1-202ENST00000394943 TCAPO15273 167 aa4.8□□□□□ -1.64
LIMA1-202ENST00000394943 PAX4O43316 350 aa4.8□□□□□ -1.64
LIMA1-202ENST00000394943 MT-ND6P03923 174 aa4.8□□□□□ -1.64
LIMA1-202ENST00000394943 DEFB130BP0DP73 79 aa4.8□□□□□ -1.64
LIMA1-202ENST00000394943 DEFB130AP0DP74 79 aa4.8□□□□□ -1.64
LIMA1-202ENST00000394943 LINC00588Q9Y4M8 146 aa4.8□□□□□ -1.64
LIMA1-202ENST00000394943 ESDP10768 282 aa4.79□□□□□ -1.64
LIMA1-202ENST00000394943 EVI2AP22794 236 aa4.79□□□□□ -1.64
LIMA1-202ENST00000394943 PKIAP61925 76 aa4.79□□□□□ -1.64
LIMA1-202ENST00000394943 TMSB15BA0A087X1C1 80 aa4.79□□□□□ -1.64
LIMA1-202ENST00000394943 ESRGQ1W209 222 aa4.79□□□□□ -1.64
LIMA1-202ENST00000394943 KCNIP4Q6PIL6 250 aa4.79□□□□□ -1.64
LIMA1-202ENST00000394943 DYNC1H1Q14204 4646 aaKnown RBP4.79□□□□□ -1.64
LIMA1-202ENST00000394943 MRPL51Q4U2R6 128 aaKnown RBP4.79□□□□□ -1.64
LIMA1-202ENST00000394943 LINC01556Q5JQF7 62 aa4.79□□□□□ -1.64
LIMA1-202ENST00000394943 CSDC2Q9Y534 153 aaKnown RBP4.79□□□□□ -1.64
LIMA1-202ENST00000394943 A0A1B0GUV1 79 aa4.78□□□□□ -1.64
LIMA1-202ENST00000394943 LAGE3Q14657 143 aa4.78□□□□□ -1.64
LIMA1-202ENST00000394943 TWIST1Q15672 202 aa4.78□□□□□ -1.64
LIMA1-202ENST00000394943 NEGR1Q7Z3B1 354 aa4.78□□□□□ -1.64
LIMA1-202ENST00000394943 FAM19A3Q7Z5A8 133 aa4.78□□□□□ -1.64
LIMA1-202ENST00000394943 MRPL52Q86TS9 123 aaKnown RBP4.78□□□□□ -1.64
LIMA1-202ENST00000394943 BORCS7Q96B45 105 aa4.78□□□□□ -1.64
LIMA1-202ENST00000394943 TIMM21Q9BVV7 248 aa4.78□□□□□ -1.64
LIMA1-202ENST00000394943 TRGV4A0A0C4DH28 118 aa4.78□□□□□ -1.64
LIMA1-202ENST00000394943 F5H768 121 aa4.78□□□□□ -1.64
LIMA1-202ENST00000394943 HLA-DQA1P01909 254 aa4.78□□□□□ -1.64
LIMA1-202ENST00000394943 EMP1P54849 157 aa4.78□□□□□ -1.64
LIMA1-202ENST00000394943 NTM-AS1Q6ZSK4 140 aa4.78□□□□□ -1.64
LIMA1-202ENST00000394943 STAB2Q8WWQ8 2551 aa4.78□□□□□ -1.64
LIMA1-202ENST00000394943 GYPEP15421 78 aa4.77□□□□□ -1.65
LIMA1-202ENST00000394943 HTN1P15515 57 aa4.77□□□□□ -1.65
LIMA1-202ENST00000394943 Q6ZRN7 208 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-202ENST00000394943 Q9UF83 564 aa4.77□□□□□ -1.65
LIMA1-202ENST00000394943 COLCA2A8K830 154 aa4.77□□□□□ -1.65
LIMA1-202ENST00000394943 PRR34Q9NV39 138 aa4.77□□□□□ -1.65
LIMA1-202ENST00000394943 A0A087WWL8 130 aa4.77□□□□□ -1.65
LIMA1-202ENST00000394943 RPL36AP83881 106 aaKnown RBP4.77□□□□□ -1.65
LIMA1-202ENST00000394943 ATP6V0E2Q8NHE4 81 aa4.77□□□□□ -1.65
LIMA1-202ENST00000394943 RPL36ALQ969Q0 106 aaKnown RBP4.77□□□□□ -1.65
LIMA1-202ENST00000394943 SMCO4Q9NRQ5 59 aa4.77□□□□□ -1.65
LIMA1-202ENST00000394943 TRBV6-8A0A0A6YYG3 113 aa4.76□□□□□ -1.65
LIMA1-202ENST00000394943 LOC100131303A0A0U1RQF7 123 aa4.76□□□□□ -1.65
LIMA1-202ENST00000394943 TSHBP01222 138 aa4.76□□□□□ -1.65
LIMA1-202ENST00000394943 SMIM15Q7Z3B0 74 aa4.76□□□□□ -1.65
LIMA1-202ENST00000394943 FAM104AQ969W3 186 aa4.76□□□□□ -1.65
LIMA1-202ENST00000394943 NBEAL2Q6ZNJ1 2754 aa4.76□□□□□ -1.65
LIMA1-202ENST00000394943 SRIP30626 198 aa4.76□□□□□ -1.65
LIMA1-202ENST00000394943 AMN1Q8IY45 258 aa4.76□□□□□ -1.65
LIMA1-202ENST00000394943 TMEM70Q9BUB7 260 aa4.76□□□□□ -1.65
LIMA1-202ENST00000394943 IGLL5B9A064 214 aa4.76□□□□□ -1.65
LIMA1-202ENST00000394943 SMIM17P0DL12 118 aa4.76□□□□□ -1.65
LIMA1-202ENST00000394943 IBA57-AS1B1ANH7 110 aa4.75□□□□□ -1.65
LIMA1-202ENST00000394943 S100PP25815 95 aa4.75□□□□□ -1.65
LIMA1-202ENST00000394943 KRTAP26-1Q6PEX3 210 aa4.75□□□□□ -1.65
LIMA1-202ENST00000394943 ALKBH7Q9BT30 221 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-202ENST00000394943 LINC01549A6NIU2 74 aa4.75□□□□□ -1.65
LIMA1-202ENST00000394943 GAS8-AS1O95177 125 aa4.75□□□□□ -1.65
LIMA1-202ENST00000394943 PYGO1Q9Y3Y4 419 aa4.75□□□□□ -1.65
LIMA1-202ENST00000394943 I3L3M4 83 aa4.75□□□□□ -1.65
LIMA1-202ENST00000394943 ZNF25P17030 456 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-202ENST00000394943 MRPS36P82909 103 aaKnown RBP4.75□□□□□ -1.65
LIMA1-202ENST00000394943 NIT1Q86X76 327 aa4.75□□□□□ -1.65
LIMA1-202ENST00000394943 DNAH5Q8TE73 4624 aa4.74□□□□□ -1.65
LIMA1-202ENST00000394943 RPS10P46783 165 aaKnown RBP4.74□□□□□ -1.65
LIMA1-202ENST00000394943 SUMO2P61956 95 aaKnown RBP4.74□□□□□ -1.65
LIMA1-202ENST00000394943 ORMDL3Q8N138 153 aa4.74□□□□□ -1.65
LIMA1-202ENST00000394943 RPS10P5Q9NQ39 176 aa4.74□□□□□ -1.65
LIMA1-202ENST00000394943 TNFRSF6BO95407 300 aa4.74□□□□□ -1.65
LIMA1-202ENST00000394943 CCL18P55774 89 aa4.74□□□□□ -1.65
LIMA1-202ENST00000394943 ZNF56Q15929 161 aa4.74□□□□□ -1.65
LIMA1-202ENST00000394943 ZFAND6Q6FIF0 208 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 123.3 ms