RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 IGHV3-30-5P0DP03 117 aa8.41□□□□□ -1.06
CUX1-204ENST00000393824 MINOS1Q5TGZ0 78 aa8.41□□□□□ -1.06
CUX1-204ENST00000393824 PRO1854Q9UHT4 67 aa8.41□□□□□ -1.06
CUX1-204ENST00000393824 MINOS1-NBL1R4GNA1 71 aa8.41□□□□□ -1.06
CUX1-204ENST00000393824 S4R3C0 116 aa8.41□□□□□ -1.06
CUX1-204ENST00000393824 FN1P02751 2386 aaKnown RBP8.41□□□□□ -1.06
CUX1-204ENST00000393824 CTSGP08311 255 aa8.41□□□□□ -1.06
CUX1-204ENST00000393824 SUMO2P61956 95 aaKnown RBP8.41□□□□□ -1.06
CUX1-204ENST00000393824 HES1Q14469 280 aa8.41□□□□□ -1.06
CUX1-204ENST00000393824 TMEM219Q86XT9 240 aa8.41□□□□□ -1.06
CUX1-204ENST00000393824 SLC25A29Q8N8R3 303 aa8.41□□□□□ -1.06
CUX1-204ENST00000393824 KLHL30-AS1Q8NEE0 82 aa8.41□□□□□ -1.06
CUX1-204ENST00000393824 MDFICQ9P1T7 246 aa8.41□□□□□ -1.06
CUX1-204ENST00000393824 TRAV8-2A0A0B4J237 113 aa8.4□□□□□ -1.06
CUX1-204ENST00000393824 OOSP1A8MZH6 123 aa8.4□□□□□ -1.06
CUX1-204ENST00000393824 PRAC2D3DTV9 90 aa8.4□□□□□ -1.06
CUX1-204ENST00000393824 FSHBP01225 129 aa8.4□□□□□ -1.06
CUX1-204ENST00000393824 KLK9Q2XQG4 91 aa8.4□□□□□ -1.06
CUX1-204ENST00000393824 C2orf66Q6UXQ4 117 aa8.4□□□□□ -1.06
CUX1-204ENST00000393824 MRPL53Q96EL3 112 aaKnown RBP8.4□□□□□ -1.06
CUX1-204ENST00000393824 KLK15Q9H2R5 256 aa8.4□□□□□ -1.06
CUX1-204ENST00000393824 KLK9Q9UKQ9 250 aa8.4□□□□□ -1.06
CUX1-204ENST00000393824 CRLF1O75462 422 aa8.4□□□□□ -1.07
CUX1-204ENST00000393824 PAPPA-AS1Q5QFB9 102 aa8.4□□□□□ -1.07
CUX1-204ENST00000393824 SPANXN1Q5VSR9 72 aa8.4□□□□□ -1.07
CUX1-204ENST00000393824 Q8N6K4 173 aa8.4□□□□□ -1.07
CUX1-204ENST00000393824 DEFB112Q30KQ8 113 aa8.39□□□□□ -1.07
CUX1-204ENST00000393824 C9JAW5 83 aa8.38□□□□□ -1.07
CUX1-204ENST00000393824 CRYGDP07320 174 aa8.38□□□□□ -1.07
CUX1-204ENST00000393824 EBI3Q14213 229 aa8.38□□□□□ -1.07
CUX1-204ENST00000393824 OR10J6PQ8NGY7 276 aa8.38□□□□□ -1.07
CUX1-204ENST00000393824 AGPAT4-IT1Q9H0P7 198 aa8.38□□□□□ -1.07
CUX1-204ENST00000393824 P0DMU3 169 aa8.38□□□□□ -1.07
CUX1-204ENST00000393824 FAM231AP0DMU4 169 aa8.38□□□□□ -1.07
CUX1-204ENST00000393824 FAM231CP0DMU5 169 aa8.38□□□□□ -1.07
CUX1-204ENST00000393824 HERVK_113P61574 105 aa8.38□□□□□ -1.07
CUX1-204ENST00000393824 NDPQ00604 133 aa8.38□□□□□ -1.07
CUX1-204ENST00000393824 LY6EQ16553 131 aa8.38□□□□□ -1.07
CUX1-204ENST00000393824 Q8N1Y9 231 aa8.38□□□□□ -1.07
CUX1-204ENST00000393824 J3QLI3 93 aa8.37□□□□□ -1.07
CUX1-204ENST00000393824 RPL13AP40429 203 aaKnown RBP8.37□□□□□ -1.07
CUX1-204ENST00000393824 CRIP2P52943 208 aaPredicted RBP8.37□□□□□ -1.07
CUX1-204ENST00000393824 LINC01587Q99440 93 aa8.37□□□□□ -1.07
CUX1-204ENST00000393824 JMJD1CQ15652 2540 aa8.37□□□□□ -1.07
CUX1-204ENST00000393824 IGLV4-69A0A075B6H9 119 aa8.37□□□□□ -1.07
CUX1-204ENST00000393824 C11orf86A6NJI1 115 aa8.37□□□□□ -1.07
CUX1-204ENST00000393824 H3BUX3 64 aa8.37□□□□□ -1.07
CUX1-204ENST00000393824 BUB3O43684 328 aa8.37□□□□□ -1.07
CUX1-204ENST00000393824 IGHV4-59P01825 116 aa8.37□□□□□ -1.07
CUX1-204ENST00000393824 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.37□□□□□ -1.07
CUX1-204ENST00000393824 Q6ZS46 218 aa8.37□□□□□ -1.07
CUX1-204ENST00000393824 DUX5Q96PT3 197 aa8.37□□□□□ -1.07
CUX1-204ENST00000393824 ODF3Q96PU9 254 aa8.37□□□□□ -1.07
CUX1-204ENST00000393824 M0R381 172 aa8.36□□□□□ -1.07
CUX1-204ENST00000393824 IGHV3-33P01772 117 aa8.36□□□□□ -1.07
CUX1-204ENST00000393824 LINC00694P0DN24 101 aa8.36□□□□□ -1.07
CUX1-204ENST00000393824 Q8N9W7 124 aa8.36□□□□□ -1.07
CUX1-204ENST00000393824 NTN5Q8WTR8 489 aaPredicted RBP8.36□□□□□ -1.07
CUX1-204ENST00000393824 MRPL23Q16540 153 aaKnown RBP8.35□□□□□ -1.07
CUX1-204ENST00000393824 C9orf47Q6ZRZ4 202 aa8.35□□□□□ -1.07
CUX1-204ENST00000393824 TRPT1Q86TN4 253 aaKnown RBP8.35□□□□□ -1.07
CUX1-204ENST00000393824 RNF182Q8N6D2 247 aa8.35□□□□□ -1.07
CUX1-204ENST00000393824 AMELXQ99217 191 aa8.35□□□□□ -1.07
CUX1-204ENST00000393824 ZFAND3Q9H8U3 227 aa8.35□□□□□ -1.07
CUX1-204ENST00000393824 LENEPQ9Y5L5 61 aa8.35□□□□□ -1.07
CUX1-204ENST00000393824 A0A0B4J2C4 111 aa8.35□□□□□ -1.07
CUX1-204ENST00000393824 LY6G6DO95868 133 aa8.35□□□□□ -1.07
CUX1-204ENST00000393824 Q6ZQT7 251 aa8.35□□□□□ -1.07
CUX1-204ENST00000393824 FAM110DQ8TAY7 271 aaPredicted RBP8.35□□□□□ -1.07
CUX1-204ENST00000393824 TMEM263Q8WUH6 116 aaKnown RBP8.35□□□□□ -1.07
CUX1-204ENST00000393824 DPH3P1Q9H4G8 78 aa8.35□□□□□ -1.07
CUX1-204ENST00000393824 PPP1R17O96001 155 aa8.34□□□□□ -1.07
CUX1-204ENST00000393824 TSHBP01222 138 aa8.34□□□□□ -1.07
CUX1-204ENST00000393824 C15orf53Q8NAA6 179 aa8.34□□□□□ -1.07
CUX1-204ENST00000393824 RPL39LQ96EH5 51 aaKnown RBP8.34□□□□□ -1.07
CUX1-204ENST00000393824 TRAV8-4A0A0B4J246 113 aa8.34□□□□□ -1.08
CUX1-204ENST00000393824 IGIPA6NJ69 53 aa8.34□□□□□ -1.08
CUX1-204ENST00000393824 TSPEAR-AS2P59090 65 aa8.34□□□□□ -1.08
CUX1-204ENST00000393824 BLCAPP62952 87 aa8.34□□□□□ -1.08
CUX1-204ENST00000393824 PMVKQ15126 192 aa8.34□□□□□ -1.08
CUX1-204ENST00000393824 ATXN8Q156A1 80 aa8.34□□□□□ -1.08
CUX1-204ENST00000393824 LINC01620Q4KN68 170 aa8.34□□□□□ -1.08
CUX1-204ENST00000393824 IGHV7-81A0A0B4J1V7 117 aa8.33□□□□□ -1.08
CUX1-204ENST00000393824 LOC107984640A0A0U1RRK4 108 aa8.33□□□□□ -1.08
CUX1-204ENST00000393824 EIF4EBP3O60516 100 aaPredicted RBP8.33□□□□□ -1.08
CUX1-204ENST00000393824 DUSP14O95147 198 aaKnown RBP8.33□□□□□ -1.08
CUX1-204ENST00000393824 IGHV3-23P01764 117 aa8.33□□□□□ -1.08
CUX1-204ENST00000393824 LINC00527Q9UJ94 153 aa8.33□□□□□ -1.08
CUX1-204ENST00000393824 TRBV10-2A0A0K0K1G8 114 aa8.32□□□□□ -1.08
CUX1-204ENST00000393824 FAM19A5Q7Z5A7 132 aaPredicted RBP8.32□□□□□ -1.08
CUX1-204ENST00000393824 C3orf56Q8N813 242 aa8.32□□□□□ -1.08
CUX1-204ENST00000393824 C5orf56Q8N8D9 126 aa8.32□□□□□ -1.08
CUX1-204ENST00000393824 TEX49A0A1B0GTD5 131 aa8.32□□□□□ -1.08
CUX1-204ENST00000393824 A6NDX4 124 aa8.32□□□□□ -1.08
CUX1-204ENST00000393824 LGALS9O00182 355 aa8.32□□□□□ -1.08
CUX1-204ENST00000393824 C9orf139Q6ZV77 190 aa8.32□□□□□ -1.08
CUX1-204ENST00000393824 GPHB5Q86YW7 130 aa8.32□□□□□ -1.08
CUX1-204ENST00000393824 CLPSL1A2RUU4 121 aa8.31□□□□□ -1.08
CUX1-204ENST00000393824 J3QQQ9 107 aa8.31□□□□□ -1.08
CUX1-204ENST00000393824 MED14OSP0DP75 135 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms