RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 TOMM6Q96B49 74 aa8.77□□□□□ -1
PTPRF-203ENST00000372407 C11orf86A6NJI1 115 aa8.77□□□□□ -1.01
PTPRF-203ENST00000372407 SPANXCQ9NY87 97 aa8.77□□□□□ -1.01
PTPRF-203ENST00000372407 ICOSQ9Y6W8 199 aa8.77□□□□□ -1.01
PTPRF-203ENST00000372407 A0A1B0GXF2 115 aa8.77□□□□□ -1.01
PTPRF-203ENST00000372407 ZFP36P26651 326 aaKnown RBP8.77□□□□□ -1.01
PTPRF-203ENST00000372407 FBXL19-AS1Q494R0 122 aa8.77□□□□□ -1.01
PTPRF-203ENST00000372407 PIFOQ8TCI5 191 aa8.77□□□□□ -1.01
PTPRF-203ENST00000372407 TRBV7-3A0A075B6L6 115 aa8.77□□□□□ -1.01
PTPRF-203ENST00000372407 DEFB113Q30KQ7 82 aa8.77□□□□□ -1.01
PTPRF-203ENST00000372407 BRWD1-AS2P59051 145 aa8.76□□□□□ -1.01
PTPRF-203ENST00000372407 IGHV4OR15-8A0A075B7B6 117 aa8.76□□□□□ -1.01
PTPRF-203ENST00000372407 A0A087WW49 117 aa8.76□□□□□ -1.01
PTPRF-203ENST00000372407 hADV29S1A0JD25 119 aa8.76□□□□□ -1.01
PTPRF-203ENST00000372407 WISP2O76076 250 aa8.76□□□□□ -1.01
PTPRF-203ENST00000372407 ATP5G1P05496 136 aa8.76□□□□□ -1.01
PTPRF-203ENST00000372407 ZNF843Q8N446 348 aa8.76□□□□□ -1.01
PTPRF-203ENST00000372407 OPRPNQ99935 248 aaPredicted RBP8.76□□□□□ -1.01
PTPRF-203ENST00000372407 COX7A2LO14548 114 aa8.76□□□□□ -1.01
PTPRF-203ENST00000372407 Q6ZPA2 131 aa8.76□□□□□ -1.01
PTPRF-203ENST00000372407 LINC00574Q9H8X3 128 aa8.76□□□□□ -1.01
PTPRF-203ENST00000372407 TMEM89A2RUT3 159 aa8.76□□□□□ -1.01
PTPRF-203ENST00000372407 DAZAP2Q15038 168 aaPredicted RBP8.76□□□□□ -1.01
PTPRF-203ENST00000372407 WDR87Q6ZQQ6 2873 aa8.75□□□□□ -1.01
PTPRF-203ENST00000372407 SPART-AS1P0CW21 52 aa8.75□□□□□ -1.01
PTPRF-203ENST00000372407 DEFB1P60022 68 aa8.75□□□□□ -1.01
PTPRF-203ENST00000372407 C20orf203Q8NBC4 194 aa8.75□□□□□ -1.01
PTPRF-203ENST00000372407 IGLV2-8P01709 118 aa8.75□□□□□ -1.01
PTPRF-203ENST00000372407 VSIG2Q96IQ7 327 aa8.75□□□□□ -1.01
PTPRF-203ENST00000372407 CAMK2N2Q96S95 79 aa8.75□□□□□ -1.01
PTPRF-203ENST00000372407 SIRPDQ9H106 197 aa8.75□□□□□ -1.01
PTPRF-203ENST00000372407 IGLV10-54A0A075B6I4 117 aa8.74□□□□□ -1.01
PTPRF-203ENST00000372407 COX7B2Q8TF08 81 aa8.74□□□□□ -1.01
PTPRF-203ENST00000372407 RBM3P98179 157 aaKnown RBP8.74□□□□□ -1.01
PTPRF-203ENST00000372407 TLN2Q9Y4G6 2542 aa8.74□□□□□ -1.01
PTPRF-203ENST00000372407 C9orf66Q5T8R8 295 aa8.74□□□□□ -1.01
PTPRF-203ENST00000372407 ZNF295-AS1Q8N0V1 137 aa8.74□□□□□ -1.01
PTPRF-203ENST00000372407 MLST8Q9BVC4 326 aa8.74□□□□□ -1.01
PTPRF-203ENST00000372407 Q9HAA7 133 aa8.74□□□□□ -1.01
PTPRF-203ENST00000372407 PCNX3Q9H6A9 2034 aa8.74□□□□□ -1.01
PTPRF-203ENST00000372407 UNQ9165/PRO28630Q6UXU0 137 aa8.74□□□□□ -1.01
PTPRF-203ENST00000372407 A0A0J9YX75 114 aa8.73□□□□□ -1.01
PTPRF-203ENST00000372407 H3BT86 120 aa8.73□□□□□ -1.01
PTPRF-203ENST00000372407 FUSP35637 526 aaKnown RBP eCLIP8.73□□□□□ -1.01
PTPRF-203ENST00000372407 UBE2BP63146 152 aa8.73□□□□□ -1.01
PTPRF-203ENST00000372407 LINC00322Q6ZN03 302 aaPredicted RBP8.73□□□□□ -1.01
PTPRF-203ENST00000372407 FOXI1Q12951 378 aa8.73□□□□□ -1.01
PTPRF-203ENST00000372407 DAND5Q8N907 189 aa8.73□□□□□ -1.01
PTPRF-203ENST00000372407 ETDCA0A1B0GVM5 59 aa8.73□□□□□ -1.01
PTPRF-203ENST00000372407 CRIP3Q6Q6R5 217 aa8.73□□□□□ -1.01
PTPRF-203ENST00000372407 TMEM61Q8N0U2 210 aa8.73□□□□□ -1.01
PTPRF-203ENST00000372407 A0A0B4J2C4 111 aa8.72□□□□□ -1.01
PTPRF-203ENST00000372407 LOXL1Q08397 574 aaPredicted RBP8.72□□□□□ -1.01
PTPRF-203ENST00000372407 MDFICQ9P1T7 246 aa8.72□□□□□ -1.01
PTPRF-203ENST00000372407 JMJD1CQ15652 2540 aa8.72□□□□□ -1.01
PTPRF-203ENST00000372407 ZNF80P51504 273 aaPredicted RBP8.72□□□□□ -1.01
PTPRF-203ENST00000372407 USP9XQ93008 2570 aaPredicted RBP8.72□□□□□ -1.01
PTPRF-203ENST00000372407 IGHV1-58A0A0C4DH39 117 aa8.71□□□□□ -1.01
PTPRF-203ENST00000372407 TRBV10-2A0A0K0K1G8 114 aa8.71□□□□□ -1.01
PTPRF-203ENST00000372407 DEFB105AQ8NG35 78 aa8.71□□□□□ -1.01
PTPRF-203ENST00000372407 ZFYVE26Q68DK2 2539 aa8.71□□□□□ -1.01
PTPRF-203ENST00000372407 MBD6Q96DN6 1003 aa8.71□□□□□ -1.01
PTPRF-203ENST00000372407 ZMAT4Q9H898 229 aa8.71□□□□□ -1.01
PTPRF-203ENST00000372407 TRBV10-1A0A0K0K1A3 114 aa8.71□□□□□ -1.02
PTPRF-203ENST00000372407 TMEM258P61165 79 aa8.71□□□□□ -1.02
PTPRF-203ENST00000372407 ATOX1O00244 68 aa8.7□□□□□ -1.02
PTPRF-203ENST00000372407 IGHV3-30-3P0DP02 117 aa8.7□□□□□ -1.02
PTPRF-203ENST00000372407 HHLA3Q9XRX5 114 aa8.7□□□□□ -1.02
PTPRF-203ENST00000372407 SETD2Q9BYW2 2564 aaPredicted RBP8.7□□□□□ -1.02
PTPRF-203ENST00000372407 IGHV4-4A0A075B6R2 117 aa8.7□□□□□ -1.02
PTPRF-203ENST00000372407 JMJD7-PLA2G4BH0Y9G9 81 aa8.7□□□□□ -1.02
PTPRF-203ENST00000372407 LGALS9O00182 355 aa8.7□□□□□ -1.02
PTPRF-203ENST00000372407 LECT2O14960 151 aa8.7□□□□□ -1.02
PTPRF-203ENST00000372407 TRBV12-3P01733 135 aa8.7□□□□□ -1.02
PTPRF-203ENST00000372407 IGLC6P0CF74 106 aa8.7□□□□□ -1.02
PTPRF-203ENST00000372407 GDF5OSQ5U4N7 250 aa8.7□□□□□ -1.02
PTPRF-203ENST00000372407 ZNF106Q9H2Y7 1883 aaKnown RBP8.69□□□□□ -1.02
PTPRF-203ENST00000372407 IGKV3D-7A0A0C4DH55 119 aa8.69□□□□□ -1.02
PTPRF-203ENST00000372407 A6NDX4 124 aa8.69□□□□□ -1.02
PTPRF-203ENST00000372407 NRGNQ92686 78 aa8.69□□□□□ -1.02
PTPRF-203ENST00000372407 ESM1Q9NQ30 184 aa8.69□□□□□ -1.02
PTPRF-203ENST00000372407 FAM236AA0A1B0GUQ0 79 aa8.69□□□□□ -1.02
PTPRF-203ENST00000372407 FAM236BA0A1B0GV22 79 aa8.69□□□□□ -1.02
PTPRF-203ENST00000372407 CXCL5P42830 114 aa8.69□□□□□ -1.02
PTPRF-203ENST00000372407 LMO4P61968 165 aa8.69□□□□□ -1.02
PTPRF-203ENST00000372407 MIR7-3HGQ8N6C7 128 aa8.69□□□□□ -1.02
PTPRF-203ENST00000372407 CCDC140Q96MF4 163 aa8.69□□□□□ -1.02
PTPRF-203ENST00000372407 A0A1B0GX51 115 aa8.68□□□□□ -1.02
PTPRF-203ENST00000372407 H3BQ85 93 aa8.68□□□□□ -1.02
PTPRF-203ENST00000372407 NDUFA1O15239 70 aa8.68□□□□□ -1.02
PTPRF-203ENST00000372407 MYCNOSP40205 109 aa8.68□□□□□ -1.02
PTPRF-203ENST00000372407 CCL18P55774 89 aa8.68□□□□□ -1.02
PTPRF-203ENST00000372407 FASNP49327 2511 aaKnown RBP8.68□□□□□ -1.02
PTPRF-203ENST00000372407 NDUFA11Q86Y39 141 aa8.68□□□□□ -1.02
PTPRF-203ENST00000372407 HTTP42858 3142 aa8.68□□□□□ -1.02
PTPRF-203ENST00000372407 ODF3BA8MYP8 253 aa8.67□□□□□ -1.02
PTPRF-203ENST00000372407 EIF4EBP1Q13541 118 aaPredicted RBP8.67□□□□□ -1.02
PTPRF-203ENST00000372407 PTH2Q96A98 100 aa8.67□□□□□ -1.02
PTPRF-203ENST00000372407 SS18L2Q9UHA2 77 aa8.67□□□□□ -1.02
PTPRF-203ENST00000372407 G3V4G9 280 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms