RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 TRBV6-5A0A0K0K1A5 114 aa13.32□□□□□ -0.28
CLN3-204ENST00000357857 K7EIL1 84 aa13.32□□□□□ -0.28
CLN3-204ENST00000357857 IGHV3-53P01767 116 aa13.32□□□□□ -0.28
CLN3-204ENST00000357857 PMCHL1Q16048 86 aa13.32□□□□□ -0.28
CLN3-204ENST00000357857 Q6ZSN1 163 aa13.32□□□□□ -0.28
CLN3-204ENST00000357857 LINC00612Q8N6U2 182 aa13.32□□□□□ -0.28
CLN3-204ENST00000357857 NIT2Q9NQR4 276 aa13.32□□□□□ -0.28
CLN3-204ENST00000357857 NOTCH1P46531 2555 aa13.32□□□□□ -0.28
CLN3-204ENST00000357857 IGHV1-24A0A0C4DH33 117 aa13.31□□□□□ -0.28
CLN3-204ENST00000357857 LINC01546A6NGU7 62 aa13.31□□□□□ -0.28
CLN3-204ENST00000357857 LYRM9A8MSI8 78 aa13.31□□□□□ -0.28
CLN3-204ENST00000357857 NBEAL2Q6ZNJ1 2754 aa13.31□□□□□ -0.28
CLN3-204ENST00000357857 DEFB4AO15263 64 aa13.3□□□□□ -0.28
CLN3-204ENST00000357857 CIDEAO60543 219 aa13.3□□□□□ -0.28
CLN3-204ENST00000357857 RPL32P62910 135 aaKnown RBP13.3□□□□□ -0.28
CLN3-204ENST00000357857 FAM222AQ5U5X8 452 aa13.3□□□□□ -0.28
CLN3-204ENST00000357857 RETNQ9HD89 108 aa13.3□□□□□ -0.28
CLN3-204ENST00000357857 MGAM2Q2M2H8 2515 aa13.29□□□□□ -0.28
CLN3-204ENST00000357857 P0DMU3 169 aa13.29□□□□□ -0.28
CLN3-204ENST00000357857 FAM231AP0DMU4 169 aa13.29□□□□□ -0.28
CLN3-204ENST00000357857 FAM231CP0DMU5 169 aa13.29□□□□□ -0.28
CLN3-204ENST00000357857 DEFB130BP0DP73 79 aa13.29□□□□□ -0.28
CLN3-204ENST00000357857 DEFB130AP0DP74 79 aa13.29□□□□□ -0.28
CLN3-204ENST00000357857 POLR2KP53803 58 aaKnown RBP13.29□□□□□ -0.28
CLN3-204ENST00000357857 TMEM70Q9BUB7 260 aa13.29□□□□□ -0.28
CLN3-204ENST00000357857 SDHAF1A6NFY7 115 aa13.28□□□□□ -0.28
CLN3-204ENST00000357857 C18orf15Q96N68 181 aa13.28□□□□□ -0.28
CLN3-204ENST00000357857 DKK2Q9UBU2 259 aa13.28□□□□□ -0.28
CLN3-204ENST00000357857 VCYO14598 125 aa13.27□□□□□ -0.29
CLN3-204ENST00000357857 TCAPO15273 167 aa13.27□□□□□ -0.29
CLN3-204ENST00000357857 LAGE3Q14657 143 aa13.27□□□□□ -0.29
CLN3-204ENST00000357857 NBEAL1Q6ZS30 2694 aa13.26□□□□□ -0.29
CLN3-204ENST00000357857 DEFB121Q5J5C9 76 aa13.26□□□□□ -0.29
CLN3-204ENST00000357857 NEGR1Q7Z3B1 354 aa13.26□□□□□ -0.29
CLN3-204ENST00000357857 NEXN-AS1Q8NBZ9 246 aa13.26□□□□□ -0.29
CLN3-204ENST00000357857 DNAJC30Q96LL9 226 aa13.26□□□□□ -0.29
CLN3-204ENST00000357857 TNFRSF18Q9Y5U5 241 aa13.26□□□□□ -0.29
CLN3-204ENST00000357857 A0A096LNJ9 63 aa13.25□□□□□ -0.29
CLN3-204ENST00000357857 TRGV4A0A0C4DH28 118 aa13.25□□□□□ -0.29
CLN3-204ENST00000357857 TRBV27A0A0K0K1C4 114 aa13.25□□□□□ -0.29
CLN3-204ENST00000357857 K7EMI3 77 aa13.25□□□□□ -0.29
CLN3-204ENST00000357857 K7EQD1 137 aa13.25□□□□□ -0.29
CLN3-204ENST00000357857 HBDP02042 147 aa13.25□□□□□ -0.29
CLN3-204ENST00000357857 SBSPONQ8IVN8 264 aa13.25□□□□□ -0.29
CLN3-204ENST00000357857 LEPROTL1O95214 131 aa13.25□□□□□ -0.29
CLN3-204ENST00000357857 Q9UF83 564 aa13.25□□□□□ -0.29
CLN3-204ENST00000357857 SPART-AS1P0CW21 52 aa13.24□□□□□ -0.29
CLN3-204ENST00000357857 FCER1GP30273 86 aa13.24□□□□□ -0.29
CLN3-204ENST00000357857 FHL2Q14192 279 aa13.24□□□□□ -0.29
CLN3-204ENST00000357857 ORMDL2Q53FV1 153 aa13.24□□□□□ -0.29
CLN3-204ENST00000357857 SLC25A29Q8N8R3 303 aa13.24□□□□□ -0.29
CLN3-204ENST00000357857 KIR2DL4Q99706 377 aa13.24□□□□□ -0.29
CLN3-204ENST00000357857 CELA1Q9UNI1 258 aa13.24□□□□□ -0.29
CLN3-204ENST00000357857 TRBV10-1A0A0K0K1A3 114 aa13.23□□□□□ -0.29
CLN3-204ENST00000357857 DAD1P61803 113 aa13.23□□□□□ -0.29
CLN3-204ENST00000357857 TRBV6-4A0A1B0GX49 114 aa13.22□□□□□ -0.29
CLN3-204ENST00000357857 HSPB8Q9UJY1 196 aa13.22□□□□□ -0.29
CLN3-204ENST00000357857 TEX48A0A1B0GUV7 120 aa13.22□□□□□ -0.29
CLN3-204ENST00000357857 I3L3M4 83 aa13.22□□□□□ -0.29
CLN3-204ENST00000357857 NUDT3O95989 172 aa13.22□□□□□ -0.29
CLN3-204ENST00000357857 KRTDAPP60985 99 aa13.21□□□□□ -0.3
CLN3-204ENST00000357857 LINC00173Q6ZV60 143 aa13.21□□□□□ -0.3
CLN3-204ENST00000357857 SPATA25Q9BR10 227 aa13.21□□□□□ -0.3
CLN3-204ENST00000357857 BTF3P20290 206 aaKnown RBP13.2□□□□□ -0.3
CLN3-204ENST00000357857 RPL36AP83881 106 aaKnown RBP13.2□□□□□ -0.3
CLN3-204ENST00000357857 ZNRF2Q8NHG8 242 aa13.2□□□□□ -0.3
CLN3-204ENST00000357857 MRAPQ8TCY5 172 aa13.2□□□□□ -0.3
CLN3-204ENST00000357857 DEFB104AQ8WTQ1 72 aa13.2□□□□□ -0.3
CLN3-204ENST00000357857 RPL36ALQ969Q0 106 aaKnown RBP13.2□□□□□ -0.3
CLN3-204ENST00000357857 C11orf68Q9H3H3 251 aaKnown RBP13.2□□□□□ -0.3
CLN3-204ENST00000357857 TRBV7-3A0A075B6L6 115 aa13.19□□□□□ -0.3
CLN3-204ENST00000357857 C3orf79P0CE67 100 aa13.19□□□□□ -0.3
CLN3-204ENST00000357857 SMIM6P0DI80 62 aa13.19□□□□□ -0.3
CLN3-204ENST00000357857 RHOHQ15669 191 aa13.19□□□□□ -0.3
CLN3-204ENST00000357857 PYY3Q5JQD4 70 aa13.19□□□□□ -0.3
CLN3-204ENST00000357857 TM2D3Q9BRN9 247 aa13.19□□□□□ -0.3
CLN3-204ENST00000357857 TSHBP01222 138 aa13.19□□□□□ -0.3
CLN3-204ENST00000357857 JOSD1Q15040 202 aaPredicted RBP13.19□□□□□ -0.3
CLN3-204ENST00000357857 PRADC1Q9BSG0 188 aa13.19□□□□□ -0.3
CLN3-204ENST00000357857 HHLA3Q9XRX5 114 aa13.18□□□□□ -0.3
CLN3-204ENST00000357857 GAGE12JA6NER3 117 aa13.17□□□□□ -0.3
CLN3-204ENST00000357857 GAGE1Q13065 139 aa13.17□□□□□ -0.3
CLN3-204ENST00000357857 GAGE4Q13068 117 aa13.17□□□□□ -0.3
CLN3-204ENST00000357857 GAGE5Q13069 117 aa13.17□□□□□ -0.3
CLN3-204ENST00000357857 GAGE13Q4V321 117 aa13.17□□□□□ -0.3
CLN3-204ENST00000357857 ATP5G1P05496 136 aa13.16□□□□□ -0.3
CLN3-204ENST00000357857 G0S2P27469 103 aa13.16□□□□□ -0.3
CLN3-204ENST00000357857 PHLDA1Q8WV24 401 aaPredicted RBP13.16□□□□□ -0.3
CLN3-204ENST00000357857 MAP1LC3CQ9BXW4 147 aa13.16□□□□□ -0.3
CLN3-204ENST00000357857 LOC100131303A0A0U1RQF7 123 aa13.16□□□□□ -0.3
CLN3-204ENST00000357857 SCGB1D1O95968 90 aa13.16□□□□□ -0.3
CLN3-204ENST00000357857 UBE2D3P61077 147 aa13.16□□□□□ -0.3
CLN3-204ENST00000357857 UBE2D2P62837 147 aa13.16□□□□□ -0.3
CLN3-204ENST00000357857 TOMM6Q96B49 74 aa13.16□□□□□ -0.3
CLN3-204ENST00000357857 PRO0255Q9UI72 69 aa13.16□□□□□ -0.3
CLN3-204ENST00000357857 IGHV3-38A0A0C4DH36 116 aa13.15□□□□□ -0.3
CLN3-204ENST00000357857 CRYBA4P53673 196 aa13.15□□□□□ -0.3
CLN3-204ENST00000357857 C2orf66Q6UXQ4 117 aa13.15□□□□□ -0.3
CLN3-204ENST00000357857 LINC00518Q8N0U6 118 aa13.15□□□□□ -0.3
CLN3-204ENST00000357857 A0A0J9YWU9 116 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms