RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 AKAP13Q12802 2813 aa5.04□□□□□ -1.6
VPS39-202ENST00000348544 TRBV6-5A0A0K0K1A5 114 aa5.04□□□□□ -1.6
VPS39-202ENST00000348544 FAM240AA0A1B0GVK7 77 aa5.04□□□□□ -1.6
VPS39-202ENST00000348544 H3BT86 120 aa5.04□□□□□ -1.6
VPS39-202ENST00000348544 MINOS1Q5TGZ0 78 aa5.04□□□□□ -1.6
VPS39-202ENST00000348544 LINC00527Q9UJ94 153 aa5.04□□□□□ -1.6
VPS39-202ENST00000348544 MINOS1-NBL1R4GNA1 71 aa5.04□□□□□ -1.6
VPS39-202ENST00000348544 IGHV3-30-3P0DP02 117 aa5.04□□□□□ -1.6
VPS39-202ENST00000348544 ZFP36P26651 326 aaKnown RBP5.04□□□□□ -1.6
VPS39-202ENST00000348544 NSUN5P1Q3KNT7 163 aa5.04□□□□□ -1.6
VPS39-202ENST00000348544 FAM74A4Q5TZK3 123 aa5.04□□□□□ -1.6
VPS39-202ENST00000348544 HRNRQ86YZ3 2850 aaPredicted RBP5.04□□□□□ -1.6
VPS39-202ENST00000348544 GVINP1Q7Z2Y8 2422 aa5.04□□□□□ -1.6
VPS39-202ENST00000348544 ASH1LQ9NR48 2969 aaKnown RBP5.04□□□□□ -1.6
VPS39-202ENST00000348544 ZFHX3Q15911 3703 aa5.03□□□□□ -1.6
VPS39-202ENST00000348544 IGKV3-7A0A075B6H7 116 aa5.03□□□□□ -1.6
VPS39-202ENST00000348544 IGLV4-3A0A075B6K6 122 aa5.03□□□□□ -1.6
VPS39-202ENST00000348544 TRAV8-3A0A0A6YYJ7 113 aa5.03□□□□□ -1.6
VPS39-202ENST00000348544 M0QY20 66 aa5.03□□□□□ -1.6
VPS39-202ENST00000348544 LST1O00453 97 aa5.03□□□□□ -1.6
VPS39-202ENST00000348544 GRNP28799 593 aaKnown RBP5.03□□□□□ -1.6
VPS39-202ENST00000348544 CEMP1Q6PRD7 247 aaPredicted RBP5.03□□□□□ -1.6
VPS39-202ENST00000348544 FAM104AQ969W3 186 aa5.03□□□□□ -1.6
VPS39-202ENST00000348544 ANKHD1Q8IWZ3 2542 aaKnown RBP5.03□□□□□ -1.6
VPS39-202ENST00000348544 PRSS2P07478 247 aa5.03□□□□□ -1.6
VPS39-202ENST00000348544 NPC2P61916 151 aa5.03□□□□□ -1.6
VPS39-202ENST00000348544 Q8NA96 180 aa5.03□□□□□ -1.6
VPS39-202ENST00000348544 C20orf203Q8NBC4 194 aa5.03□□□□□ -1.6
VPS39-202ENST00000348544 SPXQ9BT56 116 aa5.03□□□□□ -1.6
VPS39-202ENST00000348544 SPANXA1Q9NS26 97 aa5.03□□□□□ -1.6
VPS39-202ENST00000348544 TRGV11A0A075B6L2 103 aa5.02□□□□□ -1.61
VPS39-202ENST00000348544 KLLNB2CW77 178 aa5.02□□□□□ -1.61
VPS39-202ENST00000348544 I3L3M4 83 aa5.02□□□□□ -1.61
VPS39-202ENST00000348544 J3QL48 77 aa5.02□□□□□ -1.61
VPS39-202ENST00000348544 RHOHQ15669 191 aa5.02□□□□□ -1.61
VPS39-202ENST00000348544 SIRPDQ9H106 197 aa5.02□□□□□ -1.61
VPS39-202ENST00000348544 ACACAQ13085 2346 aa5.02□□□□□ -1.61
VPS39-202ENST00000348544 PRRC2AP48634 2157 aaKnown RBP5.02□□□□□ -1.61
VPS39-202ENST00000348544 FAM236AA0A1B0GUQ0 79 aa5.02□□□□□ -1.61
VPS39-202ENST00000348544 FAM236BA0A1B0GV22 79 aa5.02□□□□□ -1.61
VPS39-202ENST00000348544 A8MZ25 164 aa5.02□□□□□ -1.61
VPS39-202ENST00000348544 SMCR5Q8TEV8 140 aa5.02□□□□□ -1.61
VPS39-202ENST00000348544 TIMM21Q9BVV7 248 aa5.02□□□□□ -1.61
VPS39-202ENST00000348544 SPANXDQ9BXN6 97 aa5.02□□□□□ -1.61
VPS39-202ENST00000348544 TMEM126AQ9H061 195 aa5.02□□□□□ -1.61
VPS39-202ENST00000348544 SPANXCQ9NY87 97 aa5.02□□□□□ -1.61
VPS39-202ENST00000348544 TRAV12-3A0A0B4J271 114 aa5.01□□□□□ -1.61
VPS39-202ENST00000348544 RPL11P62913 178 aaKnown RBP5.01□□□□□ -1.61
VPS39-202ENST00000348544 C19orf54Q5BKX5 351 aa5.01□□□□□ -1.61
VPS39-202ENST00000348544 TMEM61Q8N0U2 210 aa5.01□□□□□ -1.61
VPS39-202ENST00000348544 OTOGLQ3ZCN5 2332 aa5.01□□□□□ -1.61
VPS39-202ENST00000348544 SAA4P35542 130 aa5.01□□□□□ -1.61
VPS39-202ENST00000348544 ID1P41134 155 aa5.01□□□□□ -1.61
VPS39-202ENST00000348544 MIAQ16674 131 aa5.01□□□□□ -1.61
VPS39-202ENST00000348544 C5orf56Q8N8D9 126 aa5.01□□□□□ -1.61
VPS39-202ENST00000348544 IGHV3-16A0A0C4DH30 117 aa5□□□□□ -1.61
VPS39-202ENST00000348544 LINC00694P0DN24 101 aa5□□□□□ -1.61
VPS39-202ENST00000348544 EDN2P20800 178 aa5□□□□□ -1.61
VPS39-202ENST00000348544 RNASE13Q5GAN3 156 aaKnown RBP5□□□□□ -1.61
VPS39-202ENST00000348544 TMEM219Q86XT9 240 aa5□□□□□ -1.61
VPS39-202ENST00000348544 TMEM101Q96IK0 257 aa5□□□□□ -1.61
VPS39-202ENST00000348544 C9orf85Q96MD7 179 aa5□□□□□ -1.61
VPS39-202ENST00000348544 NDUFA12Q9UI09 145 aa5□□□□□ -1.61
VPS39-202ENST00000348544 TRAV41A0A0B4J266 112 aa5□□□□□ -1.61
VPS39-202ENST00000348544 COX6CP09669 75 aa5□□□□□ -1.61
VPS39-202ENST00000348544 MRPS36P82909 103 aaKnown RBP5□□□□□ -1.61
VPS39-202ENST00000348544 OXLD1Q5BKU9 147 aa5□□□□□ -1.61
VPS39-202ENST00000348544 YAE1D1Q9NRH1 226 aa5□□□□□ -1.61
VPS39-202ENST00000348544 IGHV1-58A0A0C4DH39 117 aa5□□□□□ -1.61
VPS39-202ENST00000348544 FAM223BA6NKX1 122 aa5□□□□□ -1.61
VPS39-202ENST00000348544 NDUFA4O00483 81 aa5□□□□□ -1.61
VPS39-202ENST00000348544 FAM223AQ8IWN6 122 aa5□□□□□ -1.61
VPS39-202ENST00000348544 DAND5Q8N907 189 aa5□□□□□ -1.61
VPS39-202ENST00000348544 DCANP1Q8TF63 244 aa5□□□□□ -1.61
VPS39-202ENST00000348544 IGHV3-11P01762 117 aa4.99□□□□□ -1.61
VPS39-202ENST00000348544 VSIG2Q96IQ7 327 aa4.99□□□□□ -1.61
VPS39-202ENST00000348544 CITED2Q99967 270 aaPredicted RBP4.99□□□□□ -1.61
VPS39-202ENST00000348544 RHPN1-AS1Q9BWJ2 59 aa4.99□□□□□ -1.61
VPS39-202ENST00000348544 LOC107984640A0A0U1RRK4 108 aa4.99□□□□□ -1.61
VPS39-202ENST00000348544 CD28P10747 220 aa4.99□□□□□ -1.61
VPS39-202ENST00000348544 C11orf71Q6IPW1 123 aa4.99□□□□□ -1.61
VPS39-202ENST00000348544 DUX5Q96PT3 197 aa4.99□□□□□ -1.61
VPS39-202ENST00000348544 IMUPQ9GZP8 106 aa4.99□□□□□ -1.61
VPS39-202ENST00000348544 KLK5Q9Y337 293 aaPredicted RBP4.99□□□□□ -1.61
VPS39-202ENST00000348544 TRAV12-2A0A075B6T6 113 aa4.98□□□□□ -1.61
VPS39-202ENST00000348544 NDUFA7O95182 113 aa4.98□□□□□ -1.61
VPS39-202ENST00000348544 LY6DQ14210 128 aa4.98□□□□□ -1.61
VPS39-202ENST00000348544 C9orf153Q5TBE3 101 aa4.98□□□□□ -1.61
VPS39-202ENST00000348544 C3orf22Q8N5N4 141 aa4.98□□□□□ -1.61
VPS39-202ENST00000348544 NRGNQ92686 78 aa4.98□□□□□ -1.61
VPS39-202ENST00000348544 DNAJC30Q96LL9 226 aa4.98□□□□□ -1.61
VPS39-202ENST00000348544 CSDC2Q9Y534 153 aaKnown RBP4.98□□□□□ -1.61
VPS39-202ENST00000348544 IGHG2P01859 326 aa4.98□□□□□ -1.61
VPS39-202ENST00000348544 CDSNQ15517 529 aa4.98□□□□□ -1.61
VPS39-202ENST00000348544 PYGO1Q9Y3Y4 419 aa4.98□□□□□ -1.61
VPS39-202ENST00000348544 C22orf24Q9Y442 160 aa4.98□□□□□ -1.61
VPS39-202ENST00000348544 SPTBN1Q01082 2364 aaKnown RBP4.97□□□□□ -1.61
VPS39-202ENST00000348544 HERVK_113P63121 156 aa4.97□□□□□ -1.61
VPS39-202ENST00000348544 SDIM1Q6ZPB5 146 aa4.97□□□□□ -1.61
VPS39-202ENST00000348544 TLN1Q9Y490 2541 aaKnown RBP4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms