RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 IGHV3-30-5P0DP03 117 aa10.35□□□□□ -0.75
VAPA-201ENST00000340541 NTF3P20783 257 aa10.35□□□□□ -0.75
VAPA-201ENST00000340541 SRSF3P84103 164 aaKnown RBP10.35□□□□□ -0.75
VAPA-201ENST00000340541 WDR73Q6P4I2 378 aa10.35□□□□□ -0.75
VAPA-201ENST00000340541 NFE4Q86UQ8 179 aa10.35□□□□□ -0.75
VAPA-201ENST00000340541 ZNF727A8MUV8 499 aa10.34□□□□□ -0.75
VAPA-201ENST00000340541 IBA57-AS1B1ANH7 110 aa10.34□□□□□ -0.75
VAPA-201ENST00000340541 F5H697 171 aa10.34□□□□□ -0.75
VAPA-201ENST00000340541 SMIM17P0DL12 118 aa10.34□□□□□ -0.75
VAPA-201ENST00000340541 M0QY20 66 aa10.33□□□□□ -0.76
VAPA-201ENST00000340541 GATCO43716 136 aaKnown RBP10.33□□□□□ -0.76
VAPA-201ENST00000340541 PGPEP1Q9NXJ5 209 aa10.33□□□□□ -0.76
VAPA-201ENST00000340541 MGPP08493 103 aa10.32□□□□□ -0.76
VAPA-201ENST00000340541 TRGC1P0CF51 173 aa10.32□□□□□ -0.76
VAPA-201ENST00000340541 KRTAP10-2P60368 255 aa10.32□□□□□ -0.76
VAPA-201ENST00000340541 ERVFC1-1P60608 527 aa10.32□□□□□ -0.76
VAPA-201ENST00000340541 CT83Q5H943 113 aa10.32□□□□□ -0.76
VAPA-201ENST00000340541 SUMO4Q6EEV6 95 aa10.32□□□□□ -0.76
VAPA-201ENST00000340541 LRP1BQ9NZR2 4599 aa10.31□□□□□ -0.76
VAPA-201ENST00000340541 FOXA3P55318 350 aaPredicted RBP10.31□□□□□ -0.76
VAPA-201ENST00000340541 NIT1Q86X76 327 aa10.31□□□□□ -0.76
VAPA-201ENST00000340541 DPH3P1Q9H4G8 78 aa10.31□□□□□ -0.76
VAPA-201ENST00000340541 DNAH5Q8TE73 4624 aa10.3□□□□□ -0.76
VAPA-201ENST00000340541 TRBV6-8A0A0A6YYG3 113 aa10.3□□□□□ -0.76
VAPA-201ENST00000340541 A8MWL6 223 aa10.3□□□□□ -0.76
VAPA-201ENST00000340541 LAGE3Q14657 143 aa10.3□□□□□ -0.76
VAPA-201ENST00000340541 TWIST1Q15672 202 aa10.3□□□□□ -0.76
VAPA-201ENST00000340541 FAM74A3Q4VXF1 159 aa10.3□□□□□ -0.76
VAPA-201ENST00000340541 DAZ4Q86SG3 579 aaKnown RBP10.3□□□□□ -0.76
VAPA-201ENST00000340541 DAZ3Q9NR90 486 aaKnown RBP10.3□□□□□ -0.76
VAPA-201ENST00000340541 OSTCQ9NRP0 149 aa10.3□□□□□ -0.76
VAPA-201ENST00000340541 A0A087WTM6 91 aa10.29□□□□□ -0.76
VAPA-201ENST00000340541 EREGO14944 169 aa10.29□□□□□ -0.76
VAPA-201ENST00000340541 RPL23P62829 140 aaKnown RBP10.29□□□□□ -0.76
VAPA-201ENST00000340541 PEA15Q15121 130 aa10.29□□□□□ -0.76
VAPA-201ENST00000340541 TMEM241Q24JQ0 296 aa10.29□□□□□ -0.76
VAPA-201ENST00000340541 NTM-AS1Q6ZSK4 140 aa10.29□□□□□ -0.76
VAPA-201ENST00000340541 ISOC2Q96AB3 205 aa10.29□□□□□ -0.76
VAPA-201ENST00000340541 SMDT1Q9H4I9 107 aa10.29□□□□□ -0.76
VAPA-201ENST00000340541 H7C1H1 209 aa10.28□□□□□ -0.76
VAPA-201ENST00000340541 CDPF1Q6NVV7 123 aa10.28□□□□□ -0.76
VAPA-201ENST00000340541 TSKUQ8WUA8 353 aa10.28□□□□□ -0.76
VAPA-201ENST00000340541 PGLYRP4Q96LB8 373 aa10.28□□□□□ -0.76
VAPA-201ENST00000340541 DNAJC30Q96LL9 226 aa10.28□□□□□ -0.76
VAPA-201ENST00000340541 Q9HAA7 133 aa10.28□□□□□ -0.76
VAPA-201ENST00000340541 V9GYV3 84 aa10.28□□□□□ -0.76
VAPA-201ENST00000340541 RASL11AQ6T310 242 aa10.27□□□□□ -0.77
VAPA-201ENST00000340541 GFRA4Q9GZZ7 299 aa10.27□□□□□ -0.77
VAPA-201ENST00000340541 NAT8Q9UHE5 227 aa10.27□□□□□ -0.77
VAPA-201ENST00000340541 LRCOL1A6NCL2 159 aa10.26□□□□□ -0.77
VAPA-201ENST00000340541 FAM231BA6NCW3 169 aa10.26□□□□□ -0.77
VAPA-201ENST00000340541 HIGD1CA8MV81 97 aa10.26□□□□□ -0.77
VAPA-201ENST00000340541 CHCHD7Q9BUK0 85 aa10.26□□□□□ -0.77
VAPA-201ENST00000340541 FUSP35637 526 aaKnown RBP eCLIP10.25□□□□□ -0.77
VAPA-201ENST00000340541 GATD1Q8NB37 220 aa10.25□□□□□ -0.77
VAPA-201ENST00000340541 NIT2Q9NQR4 276 aa10.25□□□□□ -0.77
VAPA-201ENST00000340541 URGCP-MRPS24S4R325 110 aa10.25□□□□□ -0.77
VAPA-201ENST00000340541 TRAV26-2A0A0B4J265 109 aa10.24□□□□□ -0.77
VAPA-201ENST00000340541 ADIRFQ15847 76 aa10.24□□□□□ -0.77
VAPA-201ENST00000340541 TMEM97Q5BJF2 176 aa10.24□□□□□ -0.77
VAPA-201ENST00000340541 C15orf54Q8N8G6 183 aa10.24□□□□□ -0.77
VAPA-201ENST00000340541 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.24□□□□□ -0.77
VAPA-201ENST00000340541 KLK12Q9UKR0 248 aa10.24□□□□□ -0.77
VAPA-201ENST00000340541 A0A087WX48 190 aa10.23□□□□□ -0.77
VAPA-201ENST00000340541 TRAV8-3A0A0A6YYJ7 113 aa10.23□□□□□ -0.77
VAPA-201ENST00000340541 A0A1B0GUT8 65 aa10.23□□□□□ -0.77
VAPA-201ENST00000340541 EPM2AB3EWF7 344 aa10.23□□□□□ -0.77
VAPA-201ENST00000340541 IQCJQ1A5X6 159 aa10.23□□□□□ -0.77
VAPA-201ENST00000340541 MPV17L2Q567V2 206 aa10.23□□□□□ -0.77
VAPA-201ENST00000340541 FRZBQ92765 325 aa10.23□□□□□ -0.77
VAPA-201ENST00000340541 APOBP04114 4563 aaKnown RBP10.23□□□□□ -0.77
VAPA-201ENST00000340541 PSCAO43653 123 aa10.22□□□□□ -0.77
VAPA-201ENST00000340541 NUP35Q8NFH5 326 aa10.22□□□□□ -0.77
VAPA-201ENST00000340541 RPL39LQ96EH5 51 aaKnown RBP10.22□□□□□ -0.77
VAPA-201ENST00000340541 CHCHD5Q9BSY4 110 aa10.22□□□□□ -0.77
VAPA-201ENST00000340541 TRBV25-1A0A075B6N4 114 aa10.21□□□□□ -0.77
VAPA-201ENST00000340541 TMEM262E9PQX1 116 aa10.21□□□□□ -0.77
VAPA-201ENST00000340541 IFITM2Q01629 132 aa10.21□□□□□ -0.77
VAPA-201ENST00000340541 ATRAIDQ6UW56 229 aa10.21□□□□□ -0.77
VAPA-201ENST00000340541 SMIM15Q7Z3B0 74 aa10.21□□□□□ -0.77
VAPA-201ENST00000340541 Q8N976 141 aa10.21□□□□□ -0.77
VAPA-201ENST00000340541 BORCS7Q96B45 105 aa10.21□□□□□ -0.77
VAPA-201ENST00000340541 TM2D2Q9BX73 214 aa10.21□□□□□ -0.77
VAPA-201ENST00000340541 TMEM191AQ9H0A3 160 aa10.21□□□□□ -0.77
VAPA-201ENST00000340541 IGHV1-24A0A0C4DH33 117 aa10.2□□□□□ -0.78
VAPA-201ENST00000340541 GAS8-AS1O95177 125 aa10.2□□□□□ -0.78
VAPA-201ENST00000340541 RAB14P61106 215 aa10.2□□□□□ -0.78
VAPA-201ENST00000340541 WFDC2Q14508 124 aa10.2□□□□□ -0.78
VAPA-201ENST00000340541 ELOBQ15370 118 aa10.2□□□□□ -0.78
VAPA-201ENST00000340541 CLLU1Q5K131 121 aa10.2□□□□□ -0.78
VAPA-201ENST00000340541 ENHOQ6UWT2 76 aa10.2□□□□□ -0.78
VAPA-201ENST00000340541 DEFB104AQ8WTQ1 72 aa10.2□□□□□ -0.78
VAPA-201ENST00000340541 UBE2WQ96B02 151 aa10.2□□□□□ -0.78
VAPA-201ENST00000340541 RNF185Q96GF1 192 aa10.2□□□□□ -0.78
VAPA-201ENST00000340541 SMIM27A0A1W2PRY6 76 aa10.19□□□□□ -0.78
VAPA-201ENST00000340541 XGP55808 180 aa10.19□□□□□ -0.78
VAPA-201ENST00000340541 PKIAP61925 76 aa10.19□□□□□ -0.78
VAPA-201ENST00000340541 RBX1P62877 108 aa10.19□□□□□ -0.78
VAPA-201ENST00000340541 GAGE6Q13070 117 aa10.19□□□□□ -0.78
VAPA-201ENST00000340541 KCNIP4Q6PIL6 250 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms