RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 TRAV26-2A0A0B4J265 109 aa4.22□□□□□ -1.73
CSDE1-202ENST00000339438 IGHV7-4-1A0A0J9YVY3 117 aa4.22□□□□□ -1.73
CSDE1-202ENST00000339438 C11orf21Q9P2W6 132 aa4.22□□□□□ -1.73
CSDE1-202ENST00000339438 TRAV2A0A0B4J234 112 aa4.22□□□□□ -1.73
CSDE1-202ENST00000339438 TRAV8-4A0A0B4J246 113 aa4.22□□□□□ -1.73
CSDE1-202ENST00000339438 TEX22C9J3V5 150 aa4.22□□□□□ -1.73
CSDE1-202ENST00000339438 H7C423 109 aa4.22□□□□□ -1.73
CSDE1-202ENST00000339438 ZNF22P17026 224 aaPredicted RBP4.22□□□□□ -1.73
CSDE1-202ENST00000339438 LINC01620Q4KN68 170 aa4.22□□□□□ -1.73
CSDE1-202ENST00000339438 TRBV10-2A0A0K0K1G8 114 aa4.22□□□□□ -1.73
CSDE1-202ENST00000339438 LYRM7Q5U5X0 104 aa4.22□□□□□ -1.73
CSDE1-202ENST00000339438 NUP37Q8NFH4 326 aa4.22□□□□□ -1.73
CSDE1-202ENST00000339438 TIMD4Q96H15 378 aa4.22□□□□□ -1.73
CSDE1-202ENST00000339438 TRGV11A0A075B6L2 103 aa4.21□□□□□ -1.73
CSDE1-202ENST00000339438 IGHV4-4A0A075B6R2 117 aa4.21□□□□□ -1.73
CSDE1-202ENST00000339438 IGHV3-21A0A0B4J1V1 117 aa4.21□□□□□ -1.73
CSDE1-202ENST00000339438 IGKV3D-20A0A0C4DH25 116 aa4.21□□□□□ -1.73
CSDE1-202ENST00000339438 C17orf100A8MU93 164 aa4.21□□□□□ -1.73
CSDE1-202ENST00000339438 TMEM155Q4W5P6 130 aa4.21□□□□□ -1.73
CSDE1-202ENST00000339438 HCP5Q6MZN7 132 aa4.21□□□□□ -1.73
CSDE1-202ENST00000339438 CITED2Q99967 270 aaPredicted RBP4.21□□□□□ -1.73
CSDE1-202ENST00000339438 CREBBPQ92793 2442 aa4.21□□□□□ -1.74
CSDE1-202ENST00000339438 J3KT08 172 aa4.21□□□□□ -1.74
CSDE1-202ENST00000339438 GATA4P43694 442 aa4.21□□□□□ -1.74
CSDE1-202ENST00000339438 ZNF491Q8N8L2 437 aa4.21□□□□□ -1.74
CSDE1-202ENST00000339438 IMUPQ9GZP8 106 aa4.21□□□□□ -1.74
CSDE1-202ENST00000339438 RNF7Q9UBF6 113 aa4.21□□□□□ -1.74
CSDE1-202ENST00000339438 IGKV2-40A0A087WW87 121 aaPredicted RBP4.21□□□□□ -1.74
CSDE1-202ENST00000339438 A0A0B4J2C4 111 aa4.21□□□□□ -1.74
CSDE1-202ENST00000339438 IGKV2D-40P01614 121 aaPredicted RBP4.21□□□□□ -1.74
CSDE1-202ENST00000339438 CRYGAP11844 174 aa4.21□□□□□ -1.74
CSDE1-202ENST00000339438 LYPD2Q6UXB3 125 aa4.21□□□□□ -1.74
CSDE1-202ENST00000339438 ZNRF2Q8NHG8 242 aa4.21□□□□□ -1.74
CSDE1-202ENST00000339438 GAFA1Q96PS6 74 aa4.21□□□□□ -1.74
CSDE1-202ENST00000339438 AGPAT4-IT1Q9H0P7 198 aa4.21□□□□□ -1.74
CSDE1-202ENST00000339438 UQCRQO14949 82 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 SUB1P53999 127 aaKnown RBP eCLIP4.2□□□□□ -1.747e-7■■■■□ 21.6
CSDE1-202ENST00000339438 C5orf38Q86SI9 138 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 Q8TAT8 98 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 SMAD5-AS1Q9Y6J3 95 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 TRBV30A0A0K0K1B3 111 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 FAM236AA0A1B0GUQ0 79 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 FAM236BA0A1B0GV22 79 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 C11orf86A6NJI1 115 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 CCL3L1P16619 93 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 LYZP61626 148 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 PDE6HQ13956 83 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 DNAH5Q8TE73 4624 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 TEP1Q99973 2627 aaKnown RBP4.2□□□□□ -1.74
CSDE1-202ENST00000339438 VPS13BQ7Z7G8 4022 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 TMEM223A0PJW6 202 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 H3BMM0 161 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 TRIAP1O43715 76 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 TMEM219Q86XT9 240 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 KIR2DL5BQ8NHK3 375 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 UBE2WQ96B02 151 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 UPK3BQ9BT76 320 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 EDA2RQ9HAV5 297 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 C22orf24Q9Y442 160 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 MTORP42345 2549 aa4.2□□□□□ -1.74
CSDE1-202ENST00000339438 F8W735 103 aaPredicted RBP4.19□□□□□ -1.74
CSDE1-202ENST00000339438 SRSF9Q13242 221 aaKnown RBP eCLIP4.19□□□□□ -1.74
CSDE1-202ENST00000339438 CFHR4Q92496 578 aa4.19□□□□□ -1.74
CSDE1-202ENST00000339438 DUX3Q96PT4 197 aa4.19□□□□□ -1.74
CSDE1-202ENST00000339438 LITAFQ99732 161 aa4.19□□□□□ -1.74
CSDE1-202ENST00000339438 K7EIM0 57 aa4.19□□□□□ -1.74
CSDE1-202ENST00000339438 OVOL1O14753 267 aa4.19□□□□□ -1.74
CSDE1-202ENST00000339438 ZNF56Q15929 161 aa4.19□□□□□ -1.74
CSDE1-202ENST00000339438 DPH3Q96FX2 82 aa4.19□□□□□ -1.74
CSDE1-202ENST00000339438 SMIM2Q9BVW6 85 aa4.19□□□□□ -1.74
CSDE1-202ENST00000339438 CNTFRP26992 372 aa4.19□□□□□ -1.74
CSDE1-202ENST00000339438 MZT1Q08AG7 82 aa4.19□□□□□ -1.74
CSDE1-202ENST00000339438 C4orf26Q17RF5 130 aa4.19□□□□□ -1.74
CSDE1-202ENST00000339438 METTL26Q96S19 204 aa4.19□□□□□ -1.74
CSDE1-202ENST00000339438 IGIPA6NJ69 53 aa4.18□□□□□ -1.74
CSDE1-202ENST00000339438 COX7A1P24310 79 aa4.18□□□□□ -1.74
CSDE1-202ENST00000339438 MAPK1IP1LQ8NDC0 245 aa4.18□□□□□ -1.74
CSDE1-202ENST00000339438 DCANP1Q8TF63 244 aa4.18□□□□□ -1.74
CSDE1-202ENST00000339438 APELAP0DMC3 54 aa4.18□□□□□ -1.74
CSDE1-202ENST00000339438 HES1Q14469 280 aa4.18□□□□□ -1.74
CSDE1-202ENST00000339438 ATXN8Q156A1 80 aa4.18□□□□□ -1.74
CSDE1-202ENST00000339438 C9orf153Q5TBE3 101 aa4.18□□□□□ -1.74
CSDE1-202ENST00000339438 SCGB1D4Q6XE38 83 aa4.18□□□□□ -1.74
CSDE1-202ENST00000339438 IGHV3-72A0A0B4J1Y9 119 aa4.18□□□□□ -1.74
CSDE1-202ENST00000339438 TMEM30BQ3MIR4 351 aa4.18□□□□□ -1.74
CSDE1-202ENST00000339438 PRIMA1Q86XR5 153 aa4.18□□□□□ -1.74
CSDE1-202ENST00000339438 NDUFB3O43676 98 aa4.18□□□□□ -1.74
CSDE1-202ENST00000339438 COX7CP15954 63 aa4.18□□□□□ -1.74
CSDE1-202ENST00000339438 SCGB3A1Q96QR1 104 aa4.18□□□□□ -1.74
CSDE1-202ENST00000339438 LINC00527Q9UJ94 153 aa4.18□□□□□ -1.74
CSDE1-202ENST00000339438 IGHV3OR16-10A0A075B7F0 116 aa4.17□□□□□ -1.74
CSDE1-202ENST00000339438 H3BT86 120 aa4.17□□□□□ -1.74
CSDE1-202ENST00000339438 GPHB5Q86YW7 130 aa4.17□□□□□ -1.74
CSDE1-202ENST00000339438 C8orf31Q8N9H6 132 aa4.17□□□□□ -1.74
CSDE1-202ENST00000339438 PRAC2D3DTV9 90 aa4.17□□□□□ -1.74
CSDE1-202ENST00000339438 TMEM178BH3BS89 294 aa4.17□□□□□ -1.74
CSDE1-202ENST00000339438 DYNAPQ8N1N2 210 aa4.17□□□□□ -1.74
CSDE1-202ENST00000339438 LINC00311Q8N616 119 aa4.17□□□□□ -1.74
CSDE1-202ENST00000339438 RNF125Q96EQ8 232 aa4.17□□□□□ -1.74
CSDE1-202ENST00000339438 MYO9AB2RTY4 2548 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms