RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 NUDT10Q8NFP7 164 aa10.89□□□□□ -0.67
CLN3-201ENST00000333496 NUDT11Q96G61 164 aa10.89□□□□□ -0.67
CLN3-201ENST00000333496 PKD1P98161 4303 aa10.88□□□□□ -0.67
CLN3-201ENST00000333496 SERF1AO75920 110 aa10.88□□□□□ -0.67
CLN3-201ENST00000333496 SCGB1D1O95968 90 aa10.88□□□□□ -0.67
CLN3-201ENST00000333496 GATA1P15976 413 aaPredicted RBP10.88□□□□□ -0.67
CLN3-201ENST00000333496 S100A4P26447 101 aaKnown RBP10.88□□□□□ -0.67
CLN3-201ENST00000333496 ASIPP42127 132 aa10.88□□□□□ -0.67
CLN3-201ENST00000333496 LINC01559Q495D7 138 aa10.88□□□□□ -0.67
CLN3-201ENST00000333496 ATP5L2Q7Z4Y8 100 aa10.88□□□□□ -0.67
CLN3-201ENST00000333496 LOC100131303A0A0U1RQF7 123 aa10.87□□□□□ -0.67
CLN3-201ENST00000333496 C19orf71A6NCJ1 209 aa10.87□□□□□ -0.67
CLN3-201ENST00000333496 H3BVH4 76 aa10.87□□□□□ -0.67
CLN3-201ENST00000333496 GYPEP15421 78 aa10.87□□□□□ -0.67
CLN3-201ENST00000333496 LINC00310P59036 64 aa10.87□□□□□ -0.67
CLN3-201ENST00000333496 CT83Q5H943 113 aa10.87□□□□□ -0.67
CLN3-201ENST00000333496 LINC00336Q6ZUF6 198 aa10.87□□□□□ -0.67
CLN3-201ENST00000333496 PKHD1P08F94 4074 aa10.87□□□□□ -0.67
CLN3-201ENST00000333496 ARMS2P0C7Q2 107 aa10.87□□□□□ -0.67
CLN3-201ENST00000333496 LYPD5Q6UWN5 251 aa10.87□□□□□ -0.67
CLN3-201ENST00000333496 TSKUQ8WUA8 353 aa10.87□□□□□ -0.67
CLN3-201ENST00000333496 DAZAP1Q96EP5 407 aaKnown RBP10.87□□□□□ -0.67
CLN3-201ENST00000333496 SAMD10Q9BYL1 202 aa10.87□□□□□ -0.67
CLN3-201ENST00000333496 KRTAP1-5Q9BYS1 174 aa10.87□□□□□ -0.67
CLN3-201ENST00000333496 TMSB15BA0A087X1C1 80 aa10.86□□□□□ -0.67
CLN3-201ENST00000333496 IGHV3-73A0A0B4J1V6 119 aa10.86□□□□□ -0.67
CLN3-201ENST00000333496 NUPR1O60356 82 aa10.86□□□□□ -0.67
CLN3-201ENST00000333496 P01737 135 aa10.86□□□□□ -0.67
CLN3-201ENST00000333496 C1orf134Q5TEV5 83 aa10.86□□□□□ -0.67
CLN3-201ENST00000333496 DMRTA1Q5VZB9 504 aa10.86□□□□□ -0.67
CLN3-201ENST00000333496 MRPL54Q6P161 138 aaKnown RBP10.86□□□□□ -0.67
CLN3-201ENST00000333496 NEGR1Q7Z3B1 354 aa10.86□□□□□ -0.67
CLN3-201ENST00000333496 SLC25A29Q8N8R3 303 aa10.86□□□□□ -0.67
CLN3-201ENST00000333496 JPT2Q9H910 190 aa10.86□□□□□ -0.67
CLN3-201ENST00000333496 CIDEAO60543 219 aa10.85□□□□□ -0.67
CLN3-201ENST00000333496 APCSP02743 223 aa10.85□□□□□ -0.67
CLN3-201ENST00000333496 PIK3CD-AS1Q5SR53 167 aa10.85□□□□□ -0.67
CLN3-201ENST00000333496 RPP21Q9H633 154 aaKnown RBP10.85□□□□□ -0.67
CLN3-201ENST00000333496 SCRT2Q9NQ03 307 aa10.85□□□□□ -0.67
CLN3-201ENST00000333496 A0A1B0GVY2 172 aa10.84□□□□□ -0.67
CLN3-201ENST00000333496 PRSS29PA6NIE9 313 aa10.84□□□□□ -0.67
CLN3-201ENST00000333496 SRIP30626 198 aa10.84□□□□□ -0.67
CLN3-201ENST00000333496 TEX43Q6ZNM6 134 aa10.84□□□□□ -0.67
CLN3-201ENST00000333496 UFSP1Q6NVU6 142 aa10.84□□□□□ -0.67
CLN3-201ENST00000333496 Q6ZSN1 163 aa10.84□□□□□ -0.67
CLN3-201ENST00000333496 GFRA4Q9GZZ7 299 aa10.84□□□□□ -0.67
CLN3-201ENST00000333496 TRBV6-4A0A1B0GX49 114 aa10.83□□□□□ -0.68
CLN3-201ENST00000333496 A8MWV9 139 aa10.83□□□□□ -0.68
CLN3-201ENST00000333496 NXPH4O95158 308 aa10.83□□□□□ -0.68
CLN3-201ENST00000333496 MRPL52Q86TS9 123 aaKnown RBP10.83□□□□□ -0.68
CLN3-201ENST00000333496 NUP35Q8NFH5 326 aa10.83□□□□□ -0.68
CLN3-201ENST00000333496 C2orf88Q9BSF0 95 aa10.83□□□□□ -0.68
CLN3-201ENST00000333496 FAM231BA6NCW3 169 aa10.82□□□□□ -0.68
CLN3-201ENST00000333496 A8MWL6 223 aa10.82□□□□□ -0.68
CLN3-201ENST00000333496 SIVA1O15304 175 aa10.82□□□□□ -0.68
CLN3-201ENST00000333496 ZFP2Q6ZN57 461 aa10.82□□□□□ -0.68
CLN3-201ENST00000333496 C6orf223Q8N319 242 aa10.82□□□□□ -0.68
CLN3-201ENST00000333496 LINC00469Q8N7U9 141 aa10.82□□□□□ -0.68
CLN3-201ENST00000333496 OR2D3Q8NGH3 330 aa10.82□□□□□ -0.68
CLN3-201ENST00000333496 PHLDA3Q9Y5J5 127 aa10.82□□□□□ -0.68
CLN3-201ENST00000333496 HIGD1CA8MV81 97 aa10.81□□□□□ -0.68
CLN3-201ENST00000333496 F2Z2F3 143 aa10.81□□□□□ -0.68
CLN3-201ENST00000333496 AMTP48728 403 aa10.81□□□□□ -0.68
CLN3-201ENST00000333496 RHOHQ15669 191 aa10.81□□□□□ -0.68
CLN3-201ENST00000333496 A0A1B0GXF2 115 aa10.8□□□□□ -0.68
CLN3-201ENST00000333496 TTC32Q5I0X7 151 aa10.8□□□□□ -0.68
CLN3-201ENST00000333496 SYT8Q8NBV8 401 aa10.8□□□□□ -0.68
CLN3-201ENST00000333496 PRADC1Q9BSG0 188 aa10.8□□□□□ -0.68
CLN3-201ENST00000333496 DNAH11Q96DT5 4516 aa10.8□□□□□ -0.68
CLN3-201ENST00000333496 M0R381 172 aa10.8□□□□□ -0.68
CLN3-201ENST00000333496 HBBP68871 147 aa10.8□□□□□ -0.68
CLN3-201ENST00000333496 WFDC10BQ8IUB3 73 aa10.8□□□□□ -0.68
CLN3-201ENST00000333496 C18orf32Q8TCD1 76 aa10.8□□□□□ -0.68
CLN3-201ENST00000333496 Q9UF83 564 aa10.8□□□□□ -0.68
CLN3-201ENST00000333496 CRYGDP07320 174 aa10.79□□□□□ -0.68
CLN3-201ENST00000333496 MED14OSP0DP75 135 aa10.79□□□□□ -0.68
CLN3-201ENST00000333496 KIAA1644Q3SXP7 199 aa10.79□□□□□ -0.68
CLN3-201ENST00000333496 VAMP8Q9BV40 100 aa10.79□□□□□ -0.68
CLN3-201ENST00000333496 SSBP4Q9BWG4 385 aaPredicted RBP10.79□□□□□ -0.68
CLN3-201ENST00000333496 SNAI2O43623 268 aa10.78□□□□□ -0.68
CLN3-201ENST00000333496 SH2D6Q7Z4S9 175 aa10.78□□□□□ -0.68
CLN3-201ENST00000333496 OR10AG1Q8NH19 301 aa10.78□□□□□ -0.68
CLN3-201ENST00000333496 GTSF1Q8WW33 167 aa10.78□□□□□ -0.68
CLN3-201ENST00000333496 A0A087WWL8 130 aa10.77□□□□□ -0.68
CLN3-201ENST00000333496 PMCHP20382 165 aa10.77□□□□□ -0.68
CLN3-201ENST00000333496 TNP2Q05952 138 aa10.77□□□□□ -0.68
CLN3-201ENST00000333496 FAM74A4Q5TZK3 123 aa10.77□□□□□ -0.68
CLN3-201ENST00000333496 C14orf178Q8N769 122 aaPredicted RBP10.77□□□□□ -0.68
CLN3-201ENST00000333496 OR5AL1P0C617 328 aa10.76□□□□□ -0.69
CLN3-201ENST00000333496 LINC00694P0DN24 101 aa10.76□□□□□ -0.69
CLN3-201ENST00000333496 RAB4AP20338 218 aa10.76□□□□□ -0.69
CLN3-201ENST00000333496 TIRAPP58753 221 aa10.76□□□□□ -0.69
CLN3-201ENST00000333496 RPS20P60866 119 aaKnown RBP10.76□□□□□ -0.69
CLN3-201ENST00000333496 SSTP61278 116 aa10.76□□□□□ -0.69
CLN3-201ENST00000333496 BORCS7Q96B45 105 aa10.76□□□□□ -0.69
CLN3-201ENST00000333496 MUC21A0A0G2JKD1 596 aa10.76□□□□□ -0.69
CLN3-201ENST00000333496 MUC21A0A140T8X8 626 aa10.76□□□□□ -0.69
CLN3-201ENST00000333496 RHODO00212 210 aa10.76□□□□□ -0.69
CLN3-201ENST00000333496 FOXA3P55318 350 aaPredicted RBP10.76□□□□□ -0.69
CLN3-201ENST00000333496 KRTDAPP60985 99 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 111.8 ms