RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 PTH2Q96A98 100 aa11.14□□□□□ -0.63
TCOF1-201ENST00000323668 OPRPNQ99935 248 aaPredicted RBP11.14□□□□□ -0.63
TCOF1-201ENST00000323668 SPANXB1Q9NS25 103 aaPredicted RBP11.14□□□□□ -0.63
TCOF1-201ENST00000323668 COX8CQ7Z4L0 72 aa11.14□□□□□ -0.63
TCOF1-201ENST00000323668 MALP21145 153 aa11.14□□□□□ -0.63
TCOF1-201ENST00000323668 DEFB136Q30KP8 78 aa11.13□□□□□ -0.63
TCOF1-201ENST00000323668 U3KQE9 123 aa11.13□□□□□ -0.63
TCOF1-201ENST00000323668 IGHV4-4A0A075B6R2 117 aa11.13□□□□□ -0.63
TCOF1-201ENST00000323668 F8W735 103 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-201ENST00000323668 ATP6V0E2Q8NHE4 81 aa11.13□□□□□ -0.63
TCOF1-201ENST00000323668 OVOL2Q9BRP0 275 aa11.13□□□□□ -0.63
TCOF1-201ENST00000323668 LINC01620Q4KN68 170 aa11.12□□□□□ -0.63
TCOF1-201ENST00000323668 TMEM243Q9BU79 118 aa11.12□□□□□ -0.63
TCOF1-201ENST00000323668 IFITM1P13164 125 aa11.12□□□□□ -0.63
TCOF1-201ENST00000323668 C11orf68Q9H3H3 251 aaKnown RBP11.12□□□□□ -0.63
TCOF1-201ENST00000323668 CLPSL1A2RUU4 121 aa11.12□□□□□ -0.63
TCOF1-201ENST00000323668 Q9H8V8 135 aa11.12□□□□□ -0.63
TCOF1-201ENST00000323668 PRR9Q5T870 116 aa11.11□□□□□ -0.63
TCOF1-201ENST00000323668 NSUN5P1Q3KNT7 163 aa11.11□□□□□ -0.63
TCOF1-201ENST00000323668 UFSP1Q6NVU6 142 aa11.11□□□□□ -0.63
TCOF1-201ENST00000323668 IGHV4OR15-8A0A075B7B6 117 aa11.11□□□□□ -0.63
TCOF1-201ENST00000323668 A0A087WW49 117 aa11.11□□□□□ -0.63
TCOF1-201ENST00000323668 SLURP1P55000 103 aa11.11□□□□□ -0.63
TCOF1-201ENST00000323668 C15orf53Q8NAA6 179 aa11.11□□□□□ -0.63
TCOF1-201ENST00000323668 INAFM2P0DMQ5 153 aa11.11□□□□□ -0.63
TCOF1-201ENST00000323668 CFHR3Q02985 330 aa11.11□□□□□ -0.63
TCOF1-201ENST00000323668 CCDC168Q8NDH2 2452 aa11.11□□□□□ -0.63
TCOF1-201ENST00000323668 A0A0J9YY99 117 aa11.1□□□□□ -0.63
TCOF1-201ENST00000323668 GAGE2AQ6NT46 116 aa11.1□□□□□ -0.63
TCOF1-201ENST00000323668 SLC25A29Q8N8R3 303 aa11.1□□□□□ -0.63
TCOF1-201ENST00000323668 DNAJC30Q96LL9 226 aa11.1□□□□□ -0.63
TCOF1-201ENST00000323668 HTN3P15516 51 aa11.1□□□□□ -0.63
TCOF1-201ENST00000323668 UNC80Q8N2C7 3258 aa11.1□□□□□ -0.63
TCOF1-201ENST00000323668 USP9YO00507 2555 aaPredicted RBP11.1□□□□□ -0.63
TCOF1-201ENST00000323668 GAGE7O76087 117 aa11.1□□□□□ -0.63
TCOF1-201ENST00000323668 GAGE12FP0CL80 117 aa11.1□□□□□ -0.63
TCOF1-201ENST00000323668 GAGE12GP0CL81 117 aa11.1□□□□□ -0.63
TCOF1-201ENST00000323668 GAGE12IP0CL82 117 aa11.1□□□□□ -0.63
TCOF1-201ENST00000323668 TMEM89A2RUT3 159 aa11.09□□□□□ -0.63
TCOF1-201ENST00000323668 TCL1BO95988 128 aa11.09□□□□□ -0.63
TCOF1-201ENST00000323668 DEFB130BP0DP73 79 aa11.09□□□□□ -0.63
TCOF1-201ENST00000323668 DEFB130AP0DP74 79 aa11.09□□□□□ -0.63
TCOF1-201ENST00000323668 IGHV3-30-3P0DP02 117 aa11.09□□□□□ -0.63
TCOF1-201ENST00000323668 APRG1Q8IVJ8 170 aa11.09□□□□□ -0.63
TCOF1-201ENST00000323668 USP9XQ93008 2570 aaPredicted RBP11.08□□□□□ -0.63
TCOF1-201ENST00000323668 RNASE3P12724 160 aaKnown RBP11.08□□□□□ -0.64
TCOF1-201ENST00000323668 CRYBA4P53673 196 aa11.08□□□□□ -0.64
TCOF1-201ENST00000323668 Q6ZQT7 251 aa11.08□□□□□ -0.64
TCOF1-201ENST00000323668 ICOSQ9Y6W8 199 aa11.08□□□□□ -0.64
TCOF1-201ENST00000323668 RNF152Q8N8N0 203 aa11.08□□□□□ -0.64
TCOF1-201ENST00000323668 IGHG4P01861 327 aa11.08□□□□□ -0.64
TCOF1-201ENST00000323668 PFN2P35080 140 aa11.07□□□□□ -0.64
TCOF1-201ENST00000323668 ODF3Q96PU9 254 aa11.07□□□□□ -0.64
TCOF1-201ENST00000323668 CDSNQ15517 529 aa11.07□□□□□ -0.64
TCOF1-201ENST00000323668 ZMAT4Q9H898 229 aa11.07□□□□□ -0.64
TCOF1-201ENST00000323668 GAGE6Q13070 117 aa11.07□□□□□ -0.64
TCOF1-201ENST00000323668 HIVEP3Q5T1R4 2406 aa11.07□□□□□ -0.64
TCOF1-201ENST00000323668 IGHV1-58A0A0C4DH39 117 aa11.06□□□□□ -0.64
TCOF1-201ENST00000323668 SS18Q15532 418 aa11.06□□□□□ -0.64
TCOF1-201ENST00000323668 K7EQG2 157 aa11.06□□□□□ -0.64
TCOF1-201ENST00000323668 S100A7L2Q5SY68 101 aa11.06□□□□□ -0.64
TCOF1-201ENST00000323668 PCSK5Q92824 1860 aa11.06□□□□□ -0.64
TCOF1-201ENST00000323668 RAI1Q7Z5J4 1906 aaPredicted RBP11.06□□□□□ -0.64
TCOF1-201ENST00000323668 TRAV13-2A0A0B4J235 113 aa11.06□□□□□ -0.64
TCOF1-201ENST00000323668 LGALS9O00182 355 aa11.06□□□□□ -0.64
TCOF1-201ENST00000323668 TRBV7-3A0A075B6L6 115 aa11.05□□□□□ -0.64
TCOF1-201ENST00000323668 TRBV27A0A0K0K1C4 114 aa11.05□□□□□ -0.64
TCOF1-201ENST00000323668 Q96MF0 132 aa11.05□□□□□ -0.64
TCOF1-201ENST00000323668 C19orf84I3L1E1 186 aa11.05□□□□□ -0.64
TCOF1-201ENST00000323668 CEMP1Q6PRD7 247 aaPredicted RBP11.05□□□□□ -0.64
TCOF1-201ENST00000323668 RPL32P62910 135 aaKnown RBP11.05□□□□□ -0.64
TCOF1-201ENST00000323668 TRBV10-2A0A0K0K1G8 114 aa11.04□□□□□ -0.64
TCOF1-201ENST00000323668 M0QY20 66 aa11.04□□□□□ -0.64
TCOF1-201ENST00000323668 DAND5Q8N907 189 aa11.04□□□□□ -0.64
TCOF1-201ENST00000323668 NRGNQ92686 78 aa11.04□□□□□ -0.64
TCOF1-201ENST00000323668 POLR2KP53803 58 aaKnown RBP11.04□□□□□ -0.64
TCOF1-201ENST00000323668 PSMG3-AS1Q96PY0 264 aa11.04□□□□□ -0.64
TCOF1-201ENST00000323668 NOP10Q9NPE3 64 aaKnown RBP11.04□□□□□ -0.64
TCOF1-201ENST00000323668 A0A0J9YXY3 114 aa11.04□□□□□ -0.64
TCOF1-201ENST00000323668 ZNF22P17026 224 aaPredicted RBP11.04□□□□□ -0.64
TCOF1-201ENST00000323668 A0A0B4J2C4 111 aa11.03□□□□□ -0.64
TCOF1-201ENST00000323668 TRBV6-5A0A0K0K1A5 114 aa11.03□□□□□ -0.64
TCOF1-201ENST00000323668 TMEM61Q8N0U2 210 aa11.03□□□□□ -0.64
TCOF1-201ENST00000323668 TLN2Q9Y4G6 2542 aa11.03□□□□□ -0.64
TCOF1-201ENST00000323668 HERV-K104P63124 156 aa11.03□□□□□ -0.64
TCOF1-201ENST00000323668 SONP18583 2426 aaKnown RBP11.02□□□□□ -0.64
TCOF1-201ENST00000323668 P0DMU3 169 aa11.02□□□□□ -0.64
TCOF1-201ENST00000323668 FAM231AP0DMU4 169 aa11.02□□□□□ -0.64
TCOF1-201ENST00000323668 FAM231CP0DMU5 169 aa11.02□□□□□ -0.64
TCOF1-201ENST00000323668 VSIG2Q96IQ7 327 aa11.02□□□□□ -0.64
TCOF1-201ENST00000323668 KLLNB2CW77 178 aa11.02□□□□□ -0.65
TCOF1-201ENST00000323668 B5MCH6 92 aa11.02□□□□□ -0.65
TCOF1-201ENST00000323668 GHRHP01286 108 aa11.02□□□□□ -0.65
TCOF1-201ENST00000323668 IGLV4-3A0A075B6K6 122 aa11.02□□□□□ -0.65
TCOF1-201ENST00000323668 BAALC-AS2P0C853 105 aa11.02□□□□□ -0.65
TCOF1-201ENST00000323668 Q6ZUT4 128 aa11.02□□□□□ -0.65
TCOF1-201ENST00000323668 TMEM223A0PJW6 202 aa11.01□□□□□ -0.65
TCOF1-201ENST00000323668 H3BT86 120 aa11.01□□□□□ -0.65
TCOF1-201ENST00000323668 HIST1H4AP62805 103 aaKnown RBP11.01□□□□□ -0.65
TCOF1-201ENST00000323668 IGLV2-18A0A075B6J9 118 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms