RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 Q9UF83 564 aa8.42□□□□□ -1.06
CUX1-202ENST00000292538 AZU1P20160 251 aa8.42□□□□□ -1.06
CUX1-202ENST00000292538 HILS1P60008 231 aa8.42□□□□□ -1.06
CUX1-202ENST00000292538 IGHV3-53P01767 116 aa8.41□□□□□ -1.06
CUX1-202ENST00000292538 SCGB2A2Q13296 93 aa8.41□□□□□ -1.06
CUX1-202ENST00000292538 OPRPNQ99935 248 aaPredicted RBP8.41□□□□□ -1.06
CUX1-202ENST00000292538 PF4P02776 101 aa8.41□□□□□ -1.06
CUX1-202ENST00000292538 TEP1Q99973 2627 aaKnown RBP8.41□□□□□ -1.06
CUX1-202ENST00000292538 VCYO14598 125 aa8.4□□□□□ -1.06
CUX1-202ENST00000292538 INSP01308 110 aa8.4□□□□□ -1.06
CUX1-202ENST00000292538 TENM1Q9UKZ4 2725 aa8.4□□□□□ -1.07
CUX1-202ENST00000292538 NSD1Q96L73 2696 aaPredicted RBP8.4□□□□□ -1.07
CUX1-202ENST00000292538 IGHV3-38A0A0C4DH36 116 aa8.4□□□□□ -1.07
CUX1-202ENST00000292538 K7EMI3 77 aa8.4□□□□□ -1.07
CUX1-202ENST00000292538 M0QY20 66 aa8.4□□□□□ -1.07
CUX1-202ENST00000292538 NXPH4O95158 308 aa8.4□□□□□ -1.07
CUX1-202ENST00000292538 PPP1R17O96001 155 aa8.4□□□□□ -1.07
CUX1-202ENST00000292538 ZFP2Q6ZN57 461 aa8.4□□□□□ -1.07
CUX1-202ENST00000292538 TOMM6Q96B49 74 aa8.4□□□□□ -1.07
CUX1-202ENST00000292538 HHLA3Q9XRX5 114 aa8.4□□□□□ -1.07
CUX1-202ENST00000292538 CYSLTR1Q9Y271 337 aa8.4□□□□□ -1.07
CUX1-202ENST00000292538 LINC01546A6NGU7 62 aa8.39□□□□□ -1.07
CUX1-202ENST00000292538 PHLDA1Q8WV24 401 aaPredicted RBP8.39□□□□□ -1.07
CUX1-202ENST00000292538 A0A087WX48 190 aa8.39□□□□□ -1.07
CUX1-202ENST00000292538 TRGV1A0A0A0MS02 117 aa8.39□□□□□ -1.07
CUX1-202ENST00000292538 PRSS29PA6NIE9 313 aa8.39□□□□□ -1.07
CUX1-202ENST00000292538 FHL3Q13643 280 aa8.39□□□□□ -1.07
CUX1-202ENST00000292538 NAA38Q9BRA0 125 aaKnown RBP8.39□□□□□ -1.07
CUX1-202ENST00000292538 A4D1N5 150 aa8.38□□□□□ -1.07
CUX1-202ENST00000292538 BVES-AS1Q5T3Y7 98 aa8.38□□□□□ -1.07
CUX1-202ENST00000292538 MORN3Q6PF18 240 aaPredicted RBP8.38□□□□□ -1.07
CUX1-202ENST00000292538 C2orf91Q6ZV80 131 aa8.38□□□□□ -1.07
CUX1-202ENST00000292538 BAALCQ8WXS3 180 aa8.38□□□□□ -1.07
CUX1-202ENST00000292538 F8P00451 2351 aa8.38□□□□□ -1.07
CUX1-202ENST00000292538 ZNF415Q09FC8 603 aa8.38□□□□□ -1.07
CUX1-202ENST00000292538 RNASE13Q5GAN3 156 aaKnown RBP8.38□□□□□ -1.07
CUX1-202ENST00000292538 Q6ZSN1 163 aa8.38□□□□□ -1.07
CUX1-202ENST00000292538 JMJD8Q96S16 334 aa8.38□□□□□ -1.07
CUX1-202ENST00000292538 H7C1H1 209 aa8.37□□□□□ -1.07
CUX1-202ENST00000292538 M0R2P5 195 aa8.37□□□□□ -1.07
CUX1-202ENST00000292538 POLR2KP53803 58 aaKnown RBP8.37□□□□□ -1.07
CUX1-202ENST00000292538 RAB37Q96AX2 223 aa8.37□□□□□ -1.07
CUX1-202ENST00000292538 TNFRSF18Q9Y5U5 241 aa8.37□□□□□ -1.07
CUX1-202ENST00000292538 NPSP0C0P6 89 aa8.37□□□□□ -1.07
CUX1-202ENST00000292538 RIPPLY3P57055 190 aa8.37□□□□□ -1.07
CUX1-202ENST00000292538 KRTAP10-3P60369 221 aa8.37□□□□□ -1.07
CUX1-202ENST00000292538 C12orf54Q6X4T0 127 aa8.37□□□□□ -1.07
CUX1-202ENST00000292538 FGF6P10767 208 aa8.36□□□□□ -1.07
CUX1-202ENST00000292538 CEMP1Q6PRD7 247 aaPredicted RBP8.36□□□□□ -1.07
CUX1-202ENST00000292538 TRPT1Q86TN4 253 aaKnown RBP8.36□□□□□ -1.07
CUX1-202ENST00000292538 GCSHP23434 173 aa8.36□□□□□ -1.07
CUX1-202ENST00000292538 C16orf95Q9H693 158 aa8.36□□□□□ -1.07
CUX1-202ENST00000292538 TRRAPQ9Y4A5 3859 aa8.36□□□□□ -1.07
CUX1-202ENST00000292538 IGHV3-64A0A075B6Q5 118 aa8.36□□□□□ -1.07
CUX1-202ENST00000292538 F8VRH5 84 aa8.36□□□□□ -1.07
CUX1-202ENST00000292538 K7EP13 123 aa8.36□□□□□ -1.07
CUX1-202ENST00000292538 VAMP3Q15836 100 aa8.36□□□□□ -1.07
CUX1-202ENST00000292538 TMEM97Q5BJF2 176 aa8.36□□□□□ -1.07
CUX1-202ENST00000292538 TMEM170BQ5T4T1 132 aa8.36□□□□□ -1.07
CUX1-202ENST00000292538 BOD1L2Q8IYS8 172 aa8.36□□□□□ -1.07
CUX1-202ENST00000292538 C1orf158Q8N1D5 194 aa8.35□□□□□ -1.07
CUX1-202ENST00000292538 MAPKAPK5-AS1Q8N8E1 139 aa8.35□□□□□ -1.07
CUX1-202ENST00000292538 SPXQ9BT56 116 aa8.35□□□□□ -1.07
CUX1-202ENST00000292538 NOP10Q9NPE3 64 aaKnown RBP8.35□□□□□ -1.07
CUX1-202ENST00000292538 MRPL52Q86TS9 123 aaKnown RBP8.35□□□□□ -1.07
CUX1-202ENST00000292538 DEFB125Q8N687 156 aa8.35□□□□□ -1.07
CUX1-202ENST00000292538 NEXN-AS1Q8NBZ9 246 aa8.35□□□□□ -1.07
CUX1-202ENST00000292538 TRAV2A0A0B4J234 112 aa8.34□□□□□ -1.07
CUX1-202ENST00000292538 CFAP126Q5VTH2 177 aa8.34□□□□□ -1.07
CUX1-202ENST00000292538 ADARB2-AS1A8MUL3 147 aa8.34□□□□□ -1.07
CUX1-202ENST00000292538 I3L3M4 83 aa8.34□□□□□ -1.07
CUX1-202ENST00000292538 TSHBP01222 138 aa8.34□□□□□ -1.07
CUX1-202ENST00000292538 PLNP26678 52 aa8.34□□□□□ -1.07
CUX1-202ENST00000292538 SPATA3Q8NHX4 192 aa8.34□□□□□ -1.07
CUX1-202ENST00000292538 ZMAT4Q9H898 229 aa8.34□□□□□ -1.07
CUX1-202ENST00000292538 TRAV25A0A0B4J276 109 aa8.33□□□□□ -1.08
CUX1-202ENST00000292538 TRBV27A0A0K0K1C4 114 aa8.33□□□□□ -1.08
CUX1-202ENST00000292538 PTTG1IPP53801 180 aa8.33□□□□□ -1.08
CUX1-202ENST00000292538 Q6ZTI0 123 aa8.33□□□□□ -1.08
CUX1-202ENST00000292538 A8MWV9 139 aa8.33□□□□□ -1.08
CUX1-202ENST00000292538 POM121L12Q8N7R1 296 aa8.33□□□□□ -1.08
CUX1-202ENST00000292538 OR4C5Q8NGB2 326 aa8.33□□□□□ -1.08
CUX1-202ENST00000292538 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.33□□□□□ -1.08
CUX1-202ENST00000292538 IGKV2-29A2NJV5 120 aaPredicted RBP8.33□□□□□ -1.08
CUX1-202ENST00000292538 DLEU1O43261 78 aa8.33□□□□□ -1.08
CUX1-202ENST00000292538 C11orf72Q8NBR9 251 aa8.33□□□□□ -1.08
CUX1-202ENST00000292538 ZNF479Q96JC4 524 aa8.33□□□□□ -1.08
CUX1-202ENST00000292538 TRBV25-1A0A075B6N4 114 aa8.32□□□□□ -1.08
CUX1-202ENST00000292538 OR11H2Q8NH07 326 aa8.32□□□□□ -1.08
CUX1-202ENST00000292538 COX11Q9Y6N1 276 aa8.32□□□□□ -1.08
CUX1-202ENST00000292538 GAGE12BA1L429 117 aa8.32□□□□□ -1.08
CUX1-202ENST00000292538 C11orf86A6NJI1 115 aa8.32□□□□□ -1.08
CUX1-202ENST00000292538 GAGE7O76087 117 aa8.32□□□□□ -1.08
CUX1-202ENST00000292538 GAGE12FP0CL80 117 aa8.32□□□□□ -1.08
CUX1-202ENST00000292538 GAGE12GP0CL81 117 aa8.32□□□□□ -1.08
CUX1-202ENST00000292538 GAGE12IP0CL82 117 aa8.32□□□□□ -1.08
CUX1-202ENST00000292538 TRGV2A0A075B6R0 118 aa8.31□□□□□ -1.08
CUX1-202ENST00000292538 IGIPA6NJ69 53 aa8.31□□□□□ -1.08
CUX1-202ENST00000292538 IGLV1-51P01701 117 aa8.31□□□□□ -1.08
CUX1-202ENST00000292538 CHAC1Q9BUX1 264 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms