RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 TSKUQ8WUA8 353 aa9.08□□□□□ -0.96
VPS28-201ENST00000292510 DPH3P1Q9H4G8 78 aa9.08□□□□□ -0.96
VPS28-201ENST00000292510 TNFRSF18Q9Y5U5 241 aa9.08□□□□□ -0.96
VPS28-201ENST00000292510 TRAV8-6A0A0B4J262 113 aa9.07□□□□□ -0.96
VPS28-201ENST00000292510 IGHV3-38A0A0C4DH36 116 aa9.07□□□□□ -0.96
VPS28-201ENST00000292510 LINC00336Q6ZUF6 198 aa9.07□□□□□ -0.96
VPS28-201ENST00000292510 Q8N3U1 123 aa9.07□□□□□ -0.96
VPS28-201ENST00000292510 PKHD1P08F94 4074 aa9.06□□□□□ -0.96
VPS28-201ENST00000292510 M0QY20 66 aa9.06□□□□□ -0.96
VPS28-201ENST00000292510 GFRA4Q9GZZ7 299 aa9.06□□□□□ -0.96
VPS28-201ENST00000292510 TRAV26-2A0A0B4J265 109 aa9.05□□□□□ -0.96
VPS28-201ENST00000292510 IGHV3-30P01768 117 aa9.05□□□□□ -0.96
VPS28-201ENST00000292510 IGHV3-33P01772 117 aa9.05□□□□□ -0.96
VPS28-201ENST00000292510 IGHV3-30-3P0DP02 117 aa9.05□□□□□ -0.96
VPS28-201ENST00000292510 IGHV3-30-5P0DP03 117 aa9.05□□□□□ -0.96
VPS28-201ENST00000292510 TNP2Q05952 138 aa9.05□□□□□ -0.96
VPS28-201ENST00000292510 NUP35Q8NFH5 326 aa9.05□□□□□ -0.96
VPS28-201ENST00000292510 TRAV9-2A0A087WT02 112 aa9.04□□□□□ -0.96
VPS28-201ENST00000292510 A0A1B0GUT8 65 aa9.04□□□□□ -0.96
VPS28-201ENST00000292510 A0A1B0GVY2 172 aa9.04□□□□□ -0.96
VPS28-201ENST00000292510 LINC00862A6NCI5 91 aa9.04□□□□□ -0.96
VPS28-201ENST00000292510 FAM231BA6NCW3 169 aa9.04□□□□□ -0.96
VPS28-201ENST00000292510 LINC01556Q5JQF7 62 aa9.04□□□□□ -0.96
VPS28-201ENST00000292510 BORCS7Q96B45 105 aa9.04□□□□□ -0.96
VPS28-201ENST00000292510 A0A087WWC5 75 aa9.03□□□□□ -0.96
VPS28-201ENST00000292510 H7C1H1 209 aa9.03□□□□□ -0.96
VPS28-201ENST00000292510 RASL11AQ6T310 242 aa9.03□□□□□ -0.96
VPS28-201ENST00000292510 SMIM15Q7Z3B0 74 aa9.03□□□□□ -0.96
VPS28-201ENST00000292510 GATD1Q8NB37 220 aa9.03□□□□□ -0.96
VPS28-201ENST00000292510 NAT8BQ9UHF3 227 aa9.03□□□□□ -0.96
VPS28-201ENST00000292510 DYNC1H1Q14204 4646 aaKnown RBP9.03□□□□□ -0.96
VPS28-201ENST00000292510 SMIM27A0A1W2PRY6 76 aa9.02□□□□□ -0.97
VPS28-201ENST00000292510 Q6ZRN7 208 aaPredicted RBP9.02□□□□□ -0.97
VPS28-201ENST00000292510 DEFB104AQ8WTQ1 72 aa9.02□□□□□ -0.97
VPS28-201ENST00000292510 DNAJC30Q96LL9 226 aa9.02□□□□□ -0.97
VPS28-201ENST00000292510 TRBV6-8A0A0A6YYG3 113 aa9.01□□□□□ -0.97
VPS28-201ENST00000292510 NTM-AS1Q6ZSK4 140 aa9.01□□□□□ -0.97
VPS28-201ENST00000292510 DAZ4Q86SG3 579 aaKnown RBP9.01□□□□□ -0.97
VPS28-201ENST00000292510 NIT1Q86X76 327 aa9.01□□□□□ -0.97
VPS28-201ENST00000292510 C10orf126Q8N4M7 172 aa9.01□□□□□ -0.97
VPS28-201ENST00000292510 NIT2Q9NQR4 276 aa9.01□□□□□ -0.97
VPS28-201ENST00000292510 DAZ3Q9NR90 486 aaKnown RBP9.01□□□□□ -0.97
VPS28-201ENST00000292510 K7EP13 123 aa9□□□□□ -0.97
VPS28-201ENST00000292510 GAS8-AS1O95177 125 aa9□□□□□ -0.97
VPS28-201ENST00000292510 ADCYAP1P18509 176 aa9□□□□□ -0.97
VPS28-201ENST00000292510 BTF3P20290 206 aaKnown RBP9□□□□□ -0.97
VPS28-201ENST00000292510 RIGQ13278 110 aa9□□□□□ -0.97
VPS28-201ENST00000292510 UQCC3Q6UW78 93 aa9□□□□□ -0.97
VPS28-201ENST00000292510 COMMD7Q86VX2 200 aa9□□□□□ -0.97
VPS28-201ENST00000292510 SREK1IP1Q8N9Q2 155 aaPredicted RBP9□□□□□ -0.97
VPS28-201ENST00000292510 RPL39LQ96EH5 51 aaKnown RBP9□□□□□ -0.97
VPS28-201ENST00000292510 TMEM191AQ9H0A3 160 aa9□□□□□ -0.97
VPS28-201ENST00000292510 IBA57-AS1B1ANH7 110 aa8.99□□□□□ -0.97
VPS28-201ENST00000292510 PNRC1Q12796 327 aaPredicted RBP8.99□□□□□ -0.97
VPS28-201ENST00000292510 AMN1Q8IY45 258 aa8.99□□□□□ -0.97
VPS28-201ENST00000292510 RNF185Q96GF1 192 aa8.99□□□□□ -0.97
VPS28-201ENST00000292510 Q9HAA7 133 aa8.99□□□□□ -0.97
VPS28-201ENST00000292510 TMEM218A2RU14 115 aa8.98□□□□□ -0.97
VPS28-201ENST00000292510 RAB4AP20338 218 aa8.98□□□□□ -0.97
VPS28-201ENST00000292510 CAMPP49913 170 aa8.98□□□□□ -0.97
VPS28-201ENST00000292510 NFE4Q86UQ8 179 aa8.98□□□□□ -0.97
VPS28-201ENST00000292510 CHCHD5Q9BSY4 110 aa8.98□□□□□ -0.97
VPS28-201ENST00000292510 DNAH5Q8TE73 4624 aa8.98□□□□□ -0.97
VPS28-201ENST00000292510 TMEM262E9PQX1 116 aa8.97□□□□□ -0.97
VPS28-201ENST00000292510 F8W036 122 aa8.97□□□□□ -0.97
VPS28-201ENST00000292510 MRPL54Q6P161 138 aaKnown RBP8.97□□□□□ -0.97
VPS28-201ENST00000292510 URGCP-MRPS24S4R325 110 aa8.97□□□□□ -0.97
VPS28-201ENST00000292510 A0A087WX48 190 aa8.96□□□□□ -0.98
VPS28-201ENST00000292510 SMKR1H3BMG3 65 aa8.96□□□□□ -0.98
VPS28-201ENST00000292510 PPP1R2P9O14990 202 aa8.96□□□□□ -0.98
VPS28-201ENST00000292510 GAGE6Q13070 117 aa8.96□□□□□ -0.98
VPS28-201ENST00000292510 MPV17L2Q567V2 206 aa8.96□□□□□ -0.98
VPS28-201ENST00000292510 TMEM97Q5BJF2 176 aa8.96□□□□□ -0.98
VPS28-201ENST00000292510 KLK12Q9UKR0 248 aa8.96□□□□□ -0.98
VPS28-201ENST00000292510 TRBV25-1A0A075B6N4 114 aa8.95□□□□□ -0.98
VPS28-201ENST00000292510 IGHV1-24A0A0C4DH33 117 aa8.95□□□□□ -0.98
VPS28-201ENST00000292510 NCR2O95944 276 aa8.95□□□□□ -0.98
VPS28-201ENST00000292510 MT-ND4LP03901 98 aa8.95□□□□□ -0.98
VPS28-201ENST00000292510 RPS10P46783 165 aaKnown RBP8.95□□□□□ -0.98
VPS28-201ENST00000292510 IQCJQ1A5X6 159 aa8.95□□□□□ -0.98
VPS28-201ENST00000292510 KCNIP4Q6PIL6 250 aa8.95□□□□□ -0.98
VPS28-201ENST00000292510 FRZBQ92765 325 aa8.95□□□□□ -0.98
VPS28-201ENST00000292510 ANAPC16Q96DE5 110 aa8.95□□□□□ -0.98
VPS28-201ENST00000292510 LRP1BQ9NZR2 4599 aa8.94□□□□□ -0.98
VPS28-201ENST00000292510 A0A1B0GXF2 115 aa8.94□□□□□ -0.98
VPS28-201ENST00000292510 SDHAF1A6NFY7 115 aa8.94□□□□□ -0.98
VPS28-201ENST00000292510 LAGE3Q14657 143 aa8.94□□□□□ -0.98
VPS28-201ENST00000292510 MRPL51Q4U2R6 128 aaKnown RBP8.94□□□□□ -0.98
VPS28-201ENST00000292510 FAM104BQ5XKR9 115 aa8.94□□□□□ -0.98
VPS28-201ENST00000292510 ATRAIDQ6UW56 229 aa8.94□□□□□ -0.98
VPS28-201ENST00000292510 Q8N976 141 aa8.94□□□□□ -0.98
VPS28-201ENST00000292510 CHCHD7Q9BUK0 85 aa8.94□□□□□ -0.98
VPS28-201ENST00000292510 KRTAP10-2P60368 255 aa8.93□□□□□ -0.98
VPS28-201ENST00000292510 HBBP68871 147 aa8.93□□□□□ -0.98
VPS28-201ENST00000292510 COTL1Q14019 142 aa8.93□□□□□ -0.98
VPS28-201ENST00000292510 UBE2WQ96B02 151 aa8.93□□□□□ -0.98
VPS28-201ENST00000292510 MRAP2Q96G30 205 aa8.93□□□□□ -0.98
VPS28-201ENST00000292510 TMEM243Q9BU79 118 aa8.93□□□□□ -0.98
VPS28-201ENST00000292510 SEC11CQ9BY50 192 aa8.93□□□□□ -0.98
VPS28-201ENST00000292510 A0A087WTM6 91 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms