RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 CUL9Q8IWT3 2517 aa14.66□□□□□ -0.06
UPF1-201ENST00000262803 ZFP36P26651 326 aaKnown RBP14.66□□□□□ -0.06
UPF1-201ENST00000262803 KIR2DL5BQ8NHK3 375 aa14.66□□□□□ -0.06
UPF1-201ENST00000262803 LYRM9A8MSI8 78 aa14.66□□□□□ -0.06
UPF1-201ENST00000262803 P0C879 139 aa14.66□□□□□ -0.06
UPF1-201ENST00000262803 PLA2G5P39877 138 aa14.66□□□□□ -0.06
UPF1-201ENST00000262803 A0A0J9YXV3 536 aa14.66□□□□□ -0.06
UPF1-201ENST00000262803 NREPQ16612 68 aa14.66□□□□□ -0.06
UPF1-201ENST00000262803 DNAJC9-AS1A6NH13 148 aa14.65□□□□□ -0.06
UPF1-201ENST00000262803 H7C423 109 aa14.65□□□□□ -0.06
UPF1-201ENST00000262803 CACNA1AO00555 2505 aa14.65□□□□□ -0.06
UPF1-201ENST00000262803 A0A0B4J2C4 111 aa14.65□□□□□ -0.06
UPF1-201ENST00000262803 Q6ZPA2 131 aa14.65□□□□□ -0.06
UPF1-201ENST00000262803 DEFB135Q30KP9 77 aa14.64□□□□□ -0.07
UPF1-201ENST00000262803 CITED2Q99967 270 aaPredicted RBP14.64□□□□□ -0.07
UPF1-201ENST00000262803 NACAE9PAV3 2078 aa14.64□□□□□ -0.07
UPF1-201ENST00000262803 C2orf16Q68DN1 1984 aa14.64□□□□□ -0.07
UPF1-201ENST00000262803 LINC00574Q9H8X3 128 aa14.63□□□□□ -0.07
UPF1-201ENST00000262803 IGLV10-54A0A075B6I4 117 aa14.63□□□□□ -0.07
UPF1-201ENST00000262803 PROP1O75360 226 aa14.63□□□□□ -0.07
UPF1-201ENST00000262803 LINC01620Q4KN68 170 aa14.63□□□□□ -0.07
UPF1-201ENST00000262803 TTTY13Q9BZ97 58 aa14.63□□□□□ -0.07
UPF1-201ENST00000262803 A0A1B0GX51 115 aa14.63□□□□□ -0.07
UPF1-201ENST00000262803 ODF3BA8MYP8 253 aa14.63□□□□□ -0.07
UPF1-201ENST00000262803 MUSTN1Q8IVN3 82 aa14.62□□□□□ -0.07
UPF1-201ENST00000262803 IGHV1-58A0A0C4DH39 117 aa14.62□□□□□ -0.07
UPF1-201ENST00000262803 E9PLD3 99 aa14.62□□□□□ -0.07
UPF1-201ENST00000262803 MAP6D1Q9H9H5 199 aa14.62□□□□□ -0.07
UPF1-201ENST00000262803 SHISA2Q6UWI4 295 aa14.61□□□□□ -0.07
UPF1-201ENST00000262803 C11orf45Q8TAV5 145 aa14.61□□□□□ -0.07
UPF1-201ENST00000262803 C19orf71A6NCJ1 209 aa14.61□□□□□ -0.07
UPF1-201ENST00000262803 BRWD1-AS2P59051 145 aa14.61□□□□□ -0.07
UPF1-201ENST00000262803 HILS1P60008 231 aa14.61□□□□□ -0.07
UPF1-201ENST00000262803 CRIP3Q6Q6R5 217 aa14.6□□□□□ -0.07
UPF1-201ENST00000262803 FXYD2P54710 66 aa14.6□□□□□ -0.07
UPF1-201ENST00000262803 IGKV1D-37A0A075B6S9 117 aa14.6□□□□□ -0.07
UPF1-201ENST00000262803 UFSP1Q6NVU6 142 aa14.6□□□□□ -0.07
UPF1-201ENST00000262803 Q6YL49 198 aa14.6□□□□□ -0.07
UPF1-201ENST00000262803 PRR14LQ5THK1 2151 aa14.6□□□□□ -0.07
UPF1-201ENST00000262803 IGF1P05019 195 aa14.6□□□□□ -0.07
UPF1-201ENST00000262803 ATOX1O00244 68 aa14.59□□□□□ -0.07
UPF1-201ENST00000262803 RPL39P62891 51 aaKnown RBP14.59□□□□□ -0.07
UPF1-201ENST00000262803 BAALCQ8WXS3 180 aa14.59□□□□□ -0.07
UPF1-201ENST00000262803 A4D1N5 150 aa14.59□□□□□ -0.07
UPF1-201ENST00000262803 RBM3P98179 157 aaKnown RBP14.59□□□□□ -0.07
UPF1-201ENST00000262803 SPATA25Q9BR10 227 aa14.59□□□□□ -0.07
UPF1-201ENST00000262803 TMEM61Q8N0U2 210 aa14.59□□□□□ -0.07
UPF1-201ENST00000262803 TMEM256-PLSCR3K7ERE1 68 aa14.58□□□□□ -0.07
UPF1-201ENST00000262803 OBSL1O75147 1896 aa14.58□□□□□ -0.07
UPF1-201ENST00000262803 DEFB1P60022 68 aa14.58□□□□□ -0.08
UPF1-201ENST00000262803 C20orf203Q8NBC4 194 aa14.58□□□□□ -0.08
UPF1-201ENST00000262803 H3BT86 120 aa14.58□□□□□ -0.08
UPF1-201ENST00000262803 Q8NA96 180 aa14.58□□□□□ -0.08
UPF1-201ENST00000262803 ZNF295-AS1Q8N0V1 137 aa14.57□□□□□ -0.08
UPF1-201ENST00000262803 KLK12Q9UKR0 248 aa14.57□□□□□ -0.08
UPF1-201ENST00000262803 PCDH15Q96QU1 1955 aa14.57□□□□□ -0.08
UPF1-201ENST00000262803 HIGD2BQ4VC39 106 aa14.56□□□□□ -0.08
UPF1-201ENST00000262803 MDFICQ9P1T7 246 aa14.56□□□□□ -0.08
UPF1-201ENST00000262803 LMO4P61968 165 aa14.56□□□□□ -0.08
UPF1-201ENST00000262803 DENND4AQ7Z401 1863 aa14.56□□□□□ -0.08
UPF1-201ENST00000262803 COX7BP24311 80 aa14.56□□□□□ -0.08
UPF1-201ENST00000262803 ZNF106Q9H2Y7 1883 aaKnown RBP14.56□□□□□ -0.08
UPF1-201ENST00000262803 IGHV4-4A0A075B6R2 117 aa14.55□□□□□ -0.08
UPF1-201ENST00000262803 MED12LQ86YW9 2145 aa14.55□□□□□ -0.08
UPF1-201ENST00000262803 SONP18583 2426 aaKnown RBP14.55□□□□□ -0.08
UPF1-201ENST00000262803 TNRC6AQ8NDV7 1962 aaKnown RBP14.55□□□□□ -0.08
UPF1-201ENST00000262803 TAX1BP3O14907 124 aa14.55□□□□□ -0.08
UPF1-201ENST00000262803 NRGNQ92686 78 aa14.55□□□□□ -0.08
UPF1-201ENST00000262803 PCNX3Q9H6A9 2034 aa14.54□□□□□ -0.08
UPF1-201ENST00000262803 IGHV4-31P0DP07 118 aa14.54□□□□□ -0.08
UPF1-201ENST00000262803 PSMB8P28062 276 aa14.54□□□□□ -0.08
UPF1-201ENST00000262803 ODF1Q14990 250 aa14.54□□□□□ -0.08
UPF1-201ENST00000262803 NCR3O14931 201 aa14.54□□□□□ -0.08
UPF1-201ENST00000262803 IGLV2-8P01709 118 aa14.53□□□□□ -0.08
UPF1-201ENST00000262803 UNQ9165/PRO28630Q6UXU0 137 aa14.53□□□□□ -0.08
UPF1-201ENST00000262803 RNF183Q96D59 192 aa14.53□□□□□ -0.08
UPF1-201ENST00000262803 A0A1B0GXF2 115 aa14.53□□□□□ -0.08
UPF1-201ENST00000262803 RS1O15537 224 aa14.52□□□□□ -0.08
UPF1-201ENST00000262803 ADAMTS9Q9P2N4 1935 aa14.52□□□□□ -0.08
UPF1-201ENST00000262803 PTPN13Q12923 2485 aa14.52□□□□□ -0.08
UPF1-201ENST00000262803 LINC00322Q6ZN03 302 aaPredicted RBP14.52□□□□□ -0.09
UPF1-201ENST00000262803 MIFP14174 115 aa14.52□□□□□ -0.09
UPF1-201ENST00000262803 TEN1Q86WV5 123 aa14.51□□□□□ -0.09
UPF1-201ENST00000262803 TRBV10-2A0A0K0K1G8 114 aa14.51□□□□□ -0.09
UPF1-201ENST00000262803 TMEM131Q92545 1883 aa14.51□□□□□ -0.09
UPF1-201ENST00000262803 TRBV12-3P01733 135 aa14.51□□□□□ -0.09
UPF1-201ENST00000262803 WFDC2Q14508 124 aa14.5□□□□□ -0.09
UPF1-201ENST00000262803 LTBP2Q14767 1821 aa14.5□□□□□ -0.09
UPF1-201ENST00000262803 C1orf229Q6ZS94 237 aaPredicted RBP14.5□□□□□ -0.09
UPF1-201ENST00000262803 RNASE8Q8TDE3 154 aaKnown RBP14.5□□□□□ -0.09
UPF1-201ENST00000262803 KIAA1549LQ6ZVL6 1849 aa14.49□□□□□ -0.09
UPF1-201ENST00000262803 ZNF80P51504 273 aaPredicted RBP14.49□□□□□ -0.09
UPF1-201ENST00000262803 MIR7-3HGQ8N6C7 128 aa14.49□□□□□ -0.09
UPF1-201ENST00000262803 EBI3Q14213 229 aa14.48□□□□□ -0.09
UPF1-201ENST00000262803 CCDC140Q96MF4 163 aa14.48□□□□□ -0.09
UPF1-201ENST00000262803 K7EQG2 157 aa14.48□□□□□ -0.09
UPF1-201ENST00000262803 LECT2O14960 151 aa14.48□□□□□ -0.09
UPF1-201ENST00000262803 ZFAND2AQ8N6M9 145 aa14.48□□□□□ -0.09
UPF1-201ENST00000262803 DAND5Q8N907 189 aa14.48□□□□□ -0.09
UPF1-201ENST00000262803 ESM1Q9NQ30 184 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms