RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 CCDC140Q96MF4 163 aa14.24□□□□□ -0.13
SMARCC1-201ENST00000254480 TANC2Q9HCD6 1990 aa14.24□□□□□ -0.13
SMARCC1-201ENST00000254480 MAP6D1Q9H9H5 199 aa14.24□□□□□ -0.13
SMARCC1-201ENST00000254480 SORL1Q92673 2214 aa14.24□□□□□ -0.13
SMARCC1-201ENST00000254480 ZNF106Q9H2Y7 1883 aaKnown RBP14.24□□□□□ -0.13
SMARCC1-201ENST00000254480 PCDH15Q96QU1 1955 aa14.24□□□□□ -0.13
SMARCC1-201ENST00000254480 C11orf86A6NJI1 115 aa14.23□□□□□ -0.13
SMARCC1-201ENST00000254480 ZNF80P51504 273 aaPredicted RBP14.23□□□□□ -0.13
SMARCC1-201ENST00000254480 K7EMT4 169 aa14.23□□□□□ -0.13
SMARCC1-201ENST00000254480 SPAG11BQ08648 103 aa14.23□□□□□ -0.13
SMARCC1-201ENST00000254480 LINC01545Q5VT33 79 aa14.23□□□□□ -0.13
SMARCC1-201ENST00000254480 C1orf229Q6ZS94 237 aaPredicted RBP14.23□□□□□ -0.13
SMARCC1-201ENST00000254480 IGKV2-24A0A0C4DH68 120 aa14.23□□□□□ -0.13
SMARCC1-201ENST00000254480 TNRC6BQ9UPQ9 1833 aaKnown RBP14.22□□□□□ -0.13
SMARCC1-201ENST00000254480 NDUFA1O15239 70 aa14.22□□□□□ -0.13
SMARCC1-201ENST00000254480 OBSL1O75147 1896 aa14.22□□□□□ -0.13
SMARCC1-201ENST00000254480 INAFM1C9JVW0 142 aa14.22□□□□□ -0.13
SMARCC1-201ENST00000254480 A0A0J9YX75 114 aa14.22□□□□□ -0.13
SMARCC1-201ENST00000254480 FUSP35637 526 aaKnown RBP eCLIP14.22□□□□□ -0.13
SMARCC1-201ENST00000254480 FAM110AQ9BQ89 295 aa14.22□□□□□ -0.13
SMARCC1-201ENST00000254480 TOMM6Q96B49 74 aa14.21□□□□□ -0.13
SMARCC1-201ENST00000254480 LMO4P61968 165 aa14.21□□□□□ -0.13
SMARCC1-201ENST00000254480 LOXL1Q08397 574 aaPredicted RBP14.21□□□□□ -0.13
SMARCC1-201ENST00000254480 RBM3P98179 157 aaKnown RBP14.21□□□□□ -0.13
SMARCC1-201ENST00000254480 MIR7-3HGQ8N6C7 128 aa14.21□□□□□ -0.13
SMARCC1-201ENST00000254480 IGKV1D-37A0A075B6S9 117 aa14.21□□□□□ -0.13
SMARCC1-201ENST00000254480 C10orf99Q6UWK7 81 aa14.21□□□□□ -0.13
SMARCC1-201ENST00000254480 Q6ZTI0 123 aa14.21□□□□□ -0.14
SMARCC1-201ENST00000254480 LECT2O14960 151 aa14.2□□□□□ -0.14
SMARCC1-201ENST00000254480 IGF1P05019 195 aa14.2□□□□□ -0.14
SMARCC1-201ENST00000254480 TRAV26-1A0A087WT03 109 aa14.2□□□□□ -0.14
SMARCC1-201ENST00000254480 ANKHD1Q8IWZ3 2542 aaKnown RBP14.19□□□□□ -0.14
SMARCC1-201ENST00000254480 C5orf47Q569G3 176 aa14.19□□□□□ -0.14
SMARCC1-201ENST00000254480 LINC00322Q6ZN03 302 aaPredicted RBP14.19□□□□□ -0.14
SMARCC1-201ENST00000254480 Q6ZUT4 128 aa14.19□□□□□ -0.14
SMARCC1-201ENST00000254480 Q6ZPA2 131 aa14.18□□□□□ -0.14
SMARCC1-201ENST00000254480 KIR2DL5BA0A0G2JN68 375 aa14.18□□□□□ -0.14
SMARCC1-201ENST00000254480 KIR2DL5BA0A0G2JPC4 375 aa14.18□□□□□ -0.14
SMARCC1-201ENST00000254480 WFDC2Q14508 124 aa14.18□□□□□ -0.14
SMARCC1-201ENST00000254480 KIR2DL5AQ8N109 375 aa14.18□□□□□ -0.14
SMARCC1-201ENST00000254480 TM2D2Q9BX73 214 aa14.18□□□□□ -0.14
SMARCC1-201ENST00000254480 HIVEP3Q5T1R4 2406 aa14.18□□□□□ -0.14
SMARCC1-201ENST00000254480 CACNA1AO00555 2505 aa14.18□□□□□ -0.14
SMARCC1-201ENST00000254480 LINC00482Q8N8I6 264 aa14.17□□□□□ -0.14
SMARCC1-201ENST00000254480 TMEM263Q8WUH6 116 aaKnown RBP14.17□□□□□ -0.14
SMARCC1-201ENST00000254480 CTRLP40313 264 aa14.17□□□□□ -0.14
SMARCC1-201ENST00000254480 PCNX3Q9H6A9 2034 aa14.17□□□□□ -0.14
SMARCC1-201ENST00000254480 IGHV4-31P0DP07 118 aa14.16□□□□□ -0.14
SMARCC1-201ENST00000254480 MED12LQ86YW9 2145 aa14.16□□□□□ -0.14
SMARCC1-201ENST00000254480 BRWD1-AS2P59051 145 aa14.16□□□□□ -0.14
SMARCC1-201ENST00000254480 PRORYQ9H606 182 aa14.15□□□□□ -0.14
SMARCC1-201ENST00000254480 A0A096LNI7 61 aa14.15□□□□□ -0.14
SMARCC1-201ENST00000254480 LINC00269Q8N2A0 174 aa14.15□□□□□ -0.14
SMARCC1-201ENST00000254480 FBXL19-AS1Q494R0 122 aa14.14□□□□□ -0.15
SMARCC1-201ENST00000254480 C11orf45Q8TAV5 145 aa14.14□□□□□ -0.15
SMARCC1-201ENST00000254480 PRO0255Q9UI72 69 aa14.14□□□□□ -0.15
SMARCC1-201ENST00000254480 B5MCH6 92 aa14.14□□□□□ -0.15
SMARCC1-201ENST00000254480 C20orf173Q96LM9 149 aa14.14□□□□□ -0.15
SMARCC1-201ENST00000254480 NREPQ16612 68 aa14.14□□□□□ -0.15
SMARCC1-201ENST00000254480 TNRC6AQ8NDV7 1962 aaKnown RBP14.14□□□□□ -0.15
SMARCC1-201ENST00000254480 LRCOL1A6NCL2 159 aa14.13□□□□□ -0.15
SMARCC1-201ENST00000254480 ODF1Q14990 250 aa14.13□□□□□ -0.15
SMARCC1-201ENST00000254480 NFE4Q86UQ8 179 aa14.13□□□□□ -0.15
SMARCC1-201ENST00000254480 LGALS9O00182 355 aa14.13□□□□□ -0.15
SMARCC1-201ENST00000254480 TNFRSF13BO14836 293 aaPredicted RBP14.13□□□□□ -0.15
SMARCC1-201ENST00000254480 LINC01620Q4KN68 170 aa14.13□□□□□ -0.15
SMARCC1-201ENST00000254480 FAM222AQ5U5X8 452 aa14.13□□□□□ -0.15
SMARCC1-201ENST00000254480 IGKV2D-26A0A0A0MRZ7 120 aa14.12□□□□□ -0.15
SMARCC1-201ENST00000254480 ODF3BA8MYP8 253 aa14.12□□□□□ -0.15
SMARCC1-201ENST00000254480 SPATA25Q9BR10 227 aa14.12□□□□□ -0.15
SMARCC1-201ENST00000254480 TRBV6-1A0A0K0K1D8 114 aa14.12□□□□□ -0.15
SMARCC1-201ENST00000254480 E9PLD3 99 aa14.12□□□□□ -0.15
SMARCC1-201ENST00000254480 H0YGX0 51 aa14.12□□□□□ -0.15
SMARCC1-201ENST00000254480 COA6Q5JTJ3 125 aaKnown RBP14.12□□□□□ -0.15
SMARCC1-201ENST00000254480 SS18L2Q9UHA2 77 aa14.12□□□□□ -0.15
SMARCC1-201ENST00000254480 C19orf71A6NCJ1 209 aa14.11□□□□□ -0.15
SMARCC1-201ENST00000254480 PTH2Q96A98 100 aa14.11□□□□□ -0.15
SMARCC1-201ENST00000254480 KLK5Q9Y337 293 aaPredicted RBP14.11□□□□□ -0.15
SMARCC1-201ENST00000254480 C20orf203Q8NBC4 194 aa14.11□□□□□ -0.15
SMARCC1-201ENST00000254480 TMEM131Q92545 1883 aa14.1□□□□□ -0.15
SMARCC1-201ENST00000254480 PLXNB1O43157 2135 aa14.1□□□□□ -0.15
SMARCC1-201ENST00000254480 TP73-AS1Q9UF72 201 aa14.1□□□□□ -0.15
SMARCC1-201ENST00000254480 DSCAMO60469 2012 aa14.09□□□□□ -0.15
SMARCC1-201ENST00000254480 DIRC1Q969H9 104 aa14.09□□□□□ -0.15
SMARCC1-201ENST00000254480 IGHV1-58A0A0C4DH39 117 aa14.09□□□□□ -0.15
SMARCC1-201ENST00000254480 WFDC9Q8NEX5 89 aa14.09□□□□□ -0.15
SMARCC1-201ENST00000254480 C14orf132Q9NPU4 83 aa14.09□□□□□ -0.15
SMARCC1-201ENST00000254480 GDF5OSQ5U4N7 250 aa14.09□□□□□ -0.15
SMARCC1-201ENST00000254480 Q6YL49 198 aa14.09□□□□□ -0.15
SMARCC1-201ENST00000254480 PROK1P58294 105 aa14.08□□□□□ -0.15
SMARCC1-201ENST00000254480 MYO18BQ8IUG5 2567 aa14.08□□□□□ -0.16
SMARCC1-201ENST00000254480 KIAA1549Q9HCM3 1950 aa14.08□□□□□ -0.16
SMARCC1-201ENST00000254480 CHKB-CPT1BH3BT56 60 aa14.08□□□□□ -0.16
SMARCC1-201ENST00000254480 C11orf1Q9H5F2 150 aa14.08□□□□□ -0.16
SMARCC1-201ENST00000254480 CITED1Q99966 193 aa14.08□□□□□ -0.16
SMARCC1-201ENST00000254480 A0A1B0GX51 115 aa14.08□□□□□ -0.16
SMARCC1-201ENST00000254480 HIGD2AQ9BW72 106 aa14.08□□□□□ -0.16
SMARCC1-201ENST00000254480 TMEM89A2RUT3 159 aa14.07□□□□□ -0.16
SMARCC1-201ENST00000254480 NDUFB1O75438 58 aa14.07□□□□□ -0.16
SMARCC1-201ENST00000254480 C4orf48Q5BLP8 95 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms