RNA–Protein interactions for RNA: ENST00000220429.12

GABPB1-201, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 2,726 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-201ENST00000220429 S4R3C0 116 aa10.28□□□□□ -0.76
GABPB1-201ENST00000220429 CACNA1AO00555 2505 aa10.28□□□□□ -0.76
GABPB1-201ENST00000220429 C14orf178Q8N769 122 aaPredicted RBP10.28□□□□□ -0.76
GABPB1-201ENST00000220429 FANCD2OSQ96PS1 177 aa10.28□□□□□ -0.76
GABPB1-201ENST00000220429 TRAV26-2A0A0B4J265 109 aa10.27□□□□□ -0.76
GABPB1-201ENST00000220429 MINOS1Q5TGZ0 78 aa10.27□□□□□ -0.76
GABPB1-201ENST00000220429 COX8CQ7Z4L0 72 aa10.27□□□□□ -0.76
GABPB1-201ENST00000220429 EEF1AKMT3Q96AZ1 226 aa10.27□□□□□ -0.76
GABPB1-201ENST00000220429 MINOS1-NBL1R4GNA1 71 aa10.27□□□□□ -0.76
GABPB1-201ENST00000220429 CELSR1Q9NYQ6 3014 aa10.27□□□□□ -0.76
GABPB1-201ENST00000220429 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.27□□□□□ -0.77
GABPB1-201ENST00000220429 ZNF80P51504 273 aaPredicted RBP10.27□□□□□ -0.77
GABPB1-201ENST00000220429 HIST1H4AP62805 103 aaKnown RBP10.27□□□□□ -0.77
GABPB1-201ENST00000220429 ERCC8Q13216 396 aa10.27□□□□□ -0.77
GABPB1-201ENST00000220429 ORMDL2Q53FV1 153 aa10.27□□□□□ -0.77
GABPB1-201ENST00000220429 IGLV11-55A0A075B6I3 123 aa10.27□□□□□ -0.77
GABPB1-201ENST00000220429 TSPEAR-AS2P59090 65 aa10.27□□□□□ -0.77
GABPB1-201ENST00000220429 ZNF491Q8N8L2 437 aa10.27□□□□□ -0.77
GABPB1-201ENST00000220429 PFN2P35080 140 aa10.26□□□□□ -0.77
GABPB1-201ENST00000220429 SHANK2-AS3Q9BTD1 123 aa10.26□□□□□ -0.77
GABPB1-201ENST00000220429 ABCA2Q9BZC7 2435 aa10.26□□□□□ -0.77
GABPB1-201ENST00000220429 BPESC1Q9GZL8 116 aa10.26□□□□□ -0.77
GABPB1-201ENST00000220429 LMO4P61968 165 aa10.26□□□□□ -0.77
GABPB1-201ENST00000220429 ZNF415Q09FC8 603 aa10.26□□□□□ -0.77
GABPB1-201ENST00000220429 RNF125Q96EQ8 232 aa10.26□□□□□ -0.77
GABPB1-201ENST00000220429 C11orf86A6NJI1 115 aa10.25□□□□□ -0.77
GABPB1-201ENST00000220429 H3BRN7 92 aa10.25□□□□□ -0.77
GABPB1-201ENST00000220429 TRGV3P03979 118 aa10.25□□□□□ -0.77
GABPB1-201ENST00000220429 MUSTN1Q8IVN3 82 aa10.25□□□□□ -0.77
GABPB1-201ENST00000220429 SMIM2Q9BVW6 85 aa10.25□□□□□ -0.77
GABPB1-201ENST00000220429 AGPAT4-IT1Q9H0P7 198 aa10.25□□□□□ -0.77
GABPB1-201ENST00000220429 DPH3P1Q9H4G8 78 aa10.25□□□□□ -0.77
GABPB1-201ENST00000220429 V9GYY9 64 aa10.25□□□□□ -0.77
GABPB1-201ENST00000220429 TMEM223A0PJW6 202 aa10.25□□□□□ -0.77
GABPB1-201ENST00000220429 F8W735 103 aaPredicted RBP10.25□□□□□ -0.77
GABPB1-201ENST00000220429 TMEM86BQ8N661 226 aa10.25□□□□□ -0.77
GABPB1-201ENST00000220429 J3QQQ9 107 aa10.24□□□□□ -0.77
GABPB1-201ENST00000220429 SPRY2O43597 315 aa10.24□□□□□ -0.77
GABPB1-201ENST00000220429 C10orf105Q8TEF2 133 aa10.24□□□□□ -0.77
GABPB1-201ENST00000220429 NSUN5P1Q3KNT7 163 aa10.24□□□□□ -0.77
GABPB1-201ENST00000220429 PAPPA-AS1Q5QFB9 102 aa10.24□□□□□ -0.77
GABPB1-201ENST00000220429 AMELXQ99217 191 aa10.24□□□□□ -0.77
GABPB1-201ENST00000220429 IGKV2-40A0A087WW87 121 aaPredicted RBP10.23□□□□□ -0.77
GABPB1-201ENST00000220429 IGHV7-81A0A0B4J1V7 117 aa10.23□□□□□ -0.77
GABPB1-201ENST00000220429 IGKV2D-40P01614 121 aaPredicted RBP10.23□□□□□ -0.77
GABPB1-201ENST00000220429 COX6CP09669 75 aa10.23□□□□□ -0.77
GABPB1-201ENST00000220429 UBE2E1P51965 193 aa10.23□□□□□ -0.77
GABPB1-201ENST00000220429 Q8N9W7 124 aa10.23□□□□□ -0.77
GABPB1-201ENST00000220429 PSMG3-AS1Q96PY0 264 aa10.23□□□□□ -0.77
GABPB1-201ENST00000220429 UPK3BQ9BT76 320 aa10.23□□□□□ -0.77
GABPB1-201ENST00000220429 C2orf66Q6UXQ4 117 aa10.23□□□□□ -0.77
GABPB1-201ENST00000220429 SDIM1Q6ZPB5 146 aa10.23□□□□□ -0.77
GABPB1-201ENST00000220429 ICOSQ9Y6W8 199 aa10.23□□□□□ -0.77
GABPB1-201ENST00000220429 FLNCQ14315 2725 aa10.22□□□□□ -0.77
GABPB1-201ENST00000220429 IGHV3-23P01764 117 aa10.22□□□□□ -0.77
GABPB1-201ENST00000220429 IGLV4-69A0A075B6H9 119 aa10.22□□□□□ -0.77
GABPB1-201ENST00000220429 TRBV7-1A0A0A6YYK4 115 aa10.22□□□□□ -0.77
GABPB1-201ENST00000220429 Q8TAT8 98 aa10.22□□□□□ -0.77
GABPB1-201ENST00000220429 CLEC2BQ92478 149 aa10.22□□□□□ -0.77
GABPB1-201ENST00000220429 IGSF10Q6WRI0 2623 aa10.22□□□□□ -0.77
GABPB1-201ENST00000220429 MAP1AP78559 2803 aaPredicted RBP10.22□□□□□ -0.77
GABPB1-201ENST00000220429 LGALS3P17931 250 aaKnown RBP10.21□□□□□ -0.77
GABPB1-201ENST00000220429 SAA4P35542 130 aa10.21□□□□□ -0.77
GABPB1-201ENST00000220429 SERP2Q8N6R1 65 aa10.21□□□□□ -0.77
GABPB1-201ENST00000220429 PEMTQ9UBM1 199 aa10.21□□□□□ -0.77
GABPB1-201ENST00000220429 LST1O00453 97 aa10.21□□□□□ -0.78
GABPB1-201ENST00000220429 RPL18AQ02543 176 aaKnown RBP10.21□□□□□ -0.78
GABPB1-201ENST00000220429 RHOHQ15669 191 aa10.21□□□□□ -0.78
GABPB1-201ENST00000220429 C9orf85Q96MD7 179 aa10.2□□□□□ -0.78
GABPB1-201ENST00000220429 CELSR2Q9HCU4 2923 aa10.2□□□□□ -0.78
GABPB1-201ENST00000220429 SPG11Q96JI7 2443 aa10.2□□□□□ -0.78
GABPB1-201ENST00000220429 CRYBG3Q68DQ2 2970 aa10.19□□□□□ -0.78
GABPB1-201ENST00000220429 TRAV8-3A0A0A6YYJ7 113 aa10.19□□□□□ -0.78
GABPB1-201ENST00000220429 CTSGP08311 255 aa10.19□□□□□ -0.78
GABPB1-201ENST00000220429 PDE6HQ13956 83 aa10.19□□□□□ -0.78
GABPB1-201ENST00000220429 DCANP1Q8TF63 244 aa10.19□□□□□ -0.78
GABPB1-201ENST00000220429 USP9XQ93008 2570 aaPredicted RBP10.18□□□□□ -0.78
GABPB1-201ENST00000220429 FAM236DA0A1B0GTK5 79 aa10.18□□□□□ -0.78
GABPB1-201ENST00000220429 FAM236CP0DP71 79 aa10.18□□□□□ -0.78
GABPB1-201ENST00000220429 SUMO2P61956 95 aaKnown RBP10.18□□□□□ -0.78
GABPB1-201ENST00000220429 ECSCRQ19T08 205 aa10.18□□□□□ -0.78
GABPB1-201ENST00000220429 ATP6V0E1O15342 81 aa10.17□□□□□ -0.78
GABPB1-201ENST00000220429 FAM110DQ8TAY7 271 aaPredicted RBP10.17□□□□□ -0.78
GABPB1-201ENST00000220429 DOPEY1Q5JWR5 2465 aa10.17□□□□□ -0.78
GABPB1-201ENST00000220429 ACACBO00763 2458 aa10.17□□□□□ -0.78
GABPB1-201ENST00000220429 TIMM21Q9BVV7 248 aa10.16□□□□□ -0.78
GABPB1-201ENST00000220429 UTP20O75691 2785 aaKnown RBP10.16□□□□□ -0.78
GABPB1-201ENST00000220429 IGHV3OR16-10A0A075B7F0 116 aa10.15□□□□□ -0.78
GABPB1-201ENST00000220429 IGHV3OR16-8A0A075B7F1 116 aa10.15□□□□□ -0.78
GABPB1-201ENST00000220429 IGHV3-35A0A0C4DH35 117 aa10.15□□□□□ -0.78
GABPB1-201ENST00000220429 G3V318 75 aa10.15□□□□□ -0.78
GABPB1-201ENST00000220429 KLK9Q2XQG4 91 aa10.15□□□□□ -0.78
GABPB1-201ENST00000220429 C15orf32Q32M92 178 aa10.15□□□□□ -0.78
GABPB1-201ENST00000220429 KLK9Q9UKQ9 250 aa10.15□□□□□ -0.78
GABPB1-201ENST00000220429 C1orf195Q5TG92 126 aa10.14□□□□□ -0.79
GABPB1-201ENST00000220429 IGHV4-61A0A0C4DH41 118 aa10.14□□□□□ -0.79
GABPB1-201ENST00000220429 TSHBP01222 138 aa10.14□□□□□ -0.79
GABPB1-201ENST00000220429 SYNJ2BPP57105 145 aa10.14□□□□□ -0.79
GABPB1-201ENST00000220429 NPC2P61916 151 aa10.14□□□□□ -0.79
GABPB1-201ENST00000220429 SLC50A1Q9BRV3 221 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms