RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 TIMM17AQ99595 171 aa15.05■□□□□ 0
SYNGAP1-227ENST00000638142 MRPL16Q9NX20 251 aaKnown RBP15.05■□□□□ 0
SYNGAP1-227ENST00000638142 INSL3P51460 131 aa15.05■□□□□ -0
SYNGAP1-227ENST00000638142 SRSF9Q13242 221 aaKnown RBP eCLIP15.05■□□□□ -0
SYNGAP1-227ENST00000638142 SRD5A1P18405 259 aa15.04■□□□□ -0
SYNGAP1-227ENST00000638142 CFAP126Q5VTH2 177 aa15.04■□□□□ -0
SYNGAP1-227ENST00000638142 C10orf105Q8TEF2 133 aa15.04■□□□□ -0
SYNGAP1-227ENST00000638142 DCANP1Q8TF63 244 aa15.04■□□□□ -0
SYNGAP1-227ENST00000638142 DLX4Q92988 240 aaPredicted RBP15.04■□□□□ -0
SYNGAP1-227ENST00000638142 A0A1B0GV72 72 aa15.04■□□□□ -0
SYNGAP1-227ENST00000638142 APOMO95445 188 aa15.04■□□□□ -0
SYNGAP1-227ENST00000638142 CFHR3Q02985 330 aa15.04■□□□□ -0
SYNGAP1-227ENST00000638142 Q6ZS46 218 aa15.04■□□□□ -0
SYNGAP1-227ENST00000638142 JPT2Q9H910 190 aa15.04■□□□□ -0
SYNGAP1-227ENST00000638142 CD7P09564 240 aa15.03■□□□□ -0
SYNGAP1-227ENST00000638142 C1QTNF4Q9BXJ3 329 aa15.03■□□□□ -0
SYNGAP1-227ENST00000638142 TRBV6-5A0A0K0K1A5 114 aa15.03■□□□□ -0
SYNGAP1-227ENST00000638142 TRBV27A0A0K0K1C4 114 aa15.02■□□□□ -0
SYNGAP1-227ENST00000638142 LGALS9O00182 355 aa15.02■□□□□ -0
SYNGAP1-227ENST00000638142 CLEC2AQ6UVW9 174 aa15.02■□□□□ -0
SYNGAP1-227ENST00000638142 KLHL30-AS1Q8NEE0 82 aa15.02■□□□□ -0
SYNGAP1-227ENST00000638142 A0A087WWL8 130 aa15.02□□□□□ -0.01
SYNGAP1-227ENST00000638142 SDHAF1A6NFY7 115 aa15.02□□□□□ -0.01
SYNGAP1-227ENST00000638142 F5H697 171 aa15.02□□□□□ -0.01
SYNGAP1-227ENST00000638142 FOXI1Q12951 378 aa15.02□□□□□ -0.01
SYNGAP1-227ENST00000638142 ODF3Q96PU9 254 aa15.02□□□□□ -0.01
SYNGAP1-227ENST00000638142 TRAV12-3A0A0B4J271 114 aa15.01□□□□□ -0.01
SYNGAP1-227ENST00000638142 SMCPP49901 116 aaPredicted RBP15.01□□□□□ -0.01
SYNGAP1-227ENST00000638142 RPL39P62891 51 aaKnown RBP15.01□□□□□ -0.01
SYNGAP1-227ENST00000638142 ZNF580Q9UK33 172 aa15.01□□□□□ -0.01
SYNGAP1-227ENST00000638142 A0A0J9YY99 117 aa15□□□□□ -0.01
SYNGAP1-227ENST00000638142 TSPAN13O95857 204 aa15□□□□□ -0.01
SYNGAP1-227ENST00000638142 UBE2D3P61077 147 aa15□□□□□ -0.01
SYNGAP1-227ENST00000638142 UBE2D2P62837 147 aa15□□□□□ -0.01
SYNGAP1-227ENST00000638142 C9orf85Q96MD7 179 aa15□□□□□ -0.01
SYNGAP1-227ENST00000638142 ZFHX3Q15911 3703 aa15□□□□□ -0.01
SYNGAP1-227ENST00000638142 EDN2P20800 178 aa15□□□□□ -0.01
SYNGAP1-227ENST00000638142 EMP1P54849 157 aa14.99□□□□□ -0.01
SYNGAP1-227ENST00000638142 TCTEX1D4Q5JR98 221 aa14.99□□□□□ -0.01
SYNGAP1-227ENST00000638142 CCL19Q99731 98 aa14.99□□□□□ -0.01
SYNGAP1-227ENST00000638142 ZNF876PQ49A33 203 aa14.99□□□□□ -0.01
SYNGAP1-227ENST00000638142 SPTAN1Q13813 2472 aaKnown RBP14.98□□□□□ -0.01
SYNGAP1-227ENST00000638142 IGHV3-16A0A0C4DH30 117 aa14.98□□□□□ -0.01
SYNGAP1-227ENST00000638142 MSMBP08118 114 aa14.98□□□□□ -0.01
SYNGAP1-227ENST00000638142 LYRM7Q5U5X0 104 aa14.98□□□□□ -0.01
SYNGAP1-227ENST00000638142 SYT8Q8NBV8 401 aa14.98□□□□□ -0.01
SYNGAP1-227ENST00000638142 GNLYP22749 145 aa14.98□□□□□ -0.01
SYNGAP1-227ENST00000638142 WFDC12Q8WWY7 111 aa14.98□□□□□ -0.01
SYNGAP1-227ENST00000638142 PSMB2P49721 201 aa14.97□□□□□ -0.01
SYNGAP1-227ENST00000638142 TMEM170BQ5T4T1 132 aa14.97□□□□□ -0.01
SYNGAP1-227ENST00000638142 LOC107984156A0A0G2JMH3 177 aa14.96□□□□□ -0.01
SYNGAP1-227ENST00000638142 FAM74A4Q5TZK3 123 aa14.96□□□□□ -0.01
SYNGAP1-227ENST00000638142 ARL17AQ8IVW1 177 aa14.96□□□□□ -0.01
SYNGAP1-227ENST00000638142 ZNRF2Q8NHG8 242 aa14.96□□□□□ -0.01
SYNGAP1-227ENST00000638142 PSMB8P28062 276 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 RHOHQ15669 191 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 NDUFA11Q86Y39 141 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 SLC25A29Q8N8R3 303 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 DEFB104AQ8WTQ1 72 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 IGHV4-30-2A0A087WSY4 118 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 A0A0J9YX75 114 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 ZNF688P0C7X2 276 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 TSPEAR-AS2P59090 65 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 NSUN5P1Q3KNT7 163 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 NFE4Q86UQ8 179 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 CDIP1Q9H305 208 aa14.95□□□□□ -0.02
SYNGAP1-227ENST00000638142 M0QY20 66 aa14.94□□□□□ -0.02
SYNGAP1-227ENST00000638142 SNRPD3P62318 126 aaKnown RBP14.94□□□□□ -0.02
SYNGAP1-227ENST00000638142 USP24Q9UPU5 2620 aa14.94□□□□□ -0.02
SYNGAP1-227ENST00000638142 IGHV3-30P01768 117 aa14.94□□□□□ -0.02
SYNGAP1-227ENST00000638142 IGHV3-30-5P0DP03 117 aa14.94□□□□□ -0.02
SYNGAP1-227ENST00000638142 ZNF56Q15929 161 aa14.94□□□□□ -0.02
SYNGAP1-227ENST00000638142 MDFICQ9P1T7 246 aa14.94□□□□□ -0.02
SYNGAP1-227ENST00000638142 ZNF256Q9Y2P7 627 aaPredicted RBP14.94□□□□□ -0.02
SYNGAP1-227ENST00000638142 ATP5J2P56134 94 aa14.93□□□□□ -0.02
SYNGAP1-227ENST00000638142 CKS1BP61024 79 aa14.93□□□□□ -0.02
SYNGAP1-227ENST00000638142 TRPT1Q86TN4 253 aaKnown RBP14.93□□□□□ -0.02
SYNGAP1-227ENST00000638142 TRBV20-1A0A075B6N2 111 aa14.92□□□□□ -0.02
SYNGAP1-227ENST00000638142 J3QQQ9 107 aa14.92□□□□□ -0.02
SYNGAP1-227ENST00000638142 TMEM95Q3KNT9 176 aa14.92□□□□□ -0.02
SYNGAP1-227ENST00000638142 Q8N1Y9 231 aa14.92□□□□□ -0.02
SYNGAP1-227ENST00000638142 AMELXQ99217 191 aa14.92□□□□□ -0.02
SYNGAP1-227ENST00000638142 PPDPFLQ8WWR9 84 aa14.92□□□□□ -0.02
SYNGAP1-227ENST00000638142 PRORYQ9H606 182 aa14.92□□□□□ -0.02
SYNGAP1-227ENST00000638142 TRAV12-2A0A075B6T6 113 aa14.91□□□□□ -0.02
SYNGAP1-227ENST00000638142 IGHV1OR15-1A0A075B7D0 117 aa14.91□□□□□ -0.02
SYNGAP1-227ENST00000638142 LGALS3P17931 250 aaKnown RBP14.91□□□□□ -0.02
SYNGAP1-227ENST00000638142 TMEM89A2RUT3 159 aa14.91□□□□□ -0.02
SYNGAP1-227ENST00000638142 K7EQG2 157 aa14.91□□□□□ -0.02
SYNGAP1-227ENST00000638142 SFTA2Q6UW10 78 aa14.91□□□□□ -0.02
SYNGAP1-227ENST00000638142 TEN1Q86WV5 123 aa14.91□□□□□ -0.02
SYNGAP1-227ENST00000638142 SBSPONQ8IVN8 264 aa14.91□□□□□ -0.02
SYNGAP1-227ENST00000638142 CFC1BP0CG36 223 aa14.9□□□□□ -0.02
SYNGAP1-227ENST00000638142 CFC1P0CG37 223 aa14.9□□□□□ -0.02
SYNGAP1-227ENST00000638142 ZNF418Q8TF45 676 aaPredicted RBP14.9□□□□□ -0.02
SYNGAP1-227ENST00000638142 B4DSR2 109 aa14.9□□□□□ -0.02
SYNGAP1-227ENST00000638142 IGKV3-20P01619 116 aa14.9□□□□□ -0.02
SYNGAP1-227ENST00000638142 VCX2Q9H322 139 aa14.9□□□□□ -0.02
SYNGAP1-227ENST00000638142 AVPP01185 164 aa14.89□□□□□ -0.03
SYNGAP1-227ENST00000638142 C10orf126Q8N4M7 172 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms