RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 RS1O15537 224 aa11.06□□□□□ -0.64
UPF1-206ENST00000598471 GAGE7O76087 117 aa11.06□□□□□ -0.64
UPF1-206ENST00000598471 GAGE12FP0CL80 117 aa11.06□□□□□ -0.64
UPF1-206ENST00000598471 GAGE12GP0CL81 117 aa11.06□□□□□ -0.64
UPF1-206ENST00000598471 GAGE12IP0CL82 117 aa11.06□□□□□ -0.64
UPF1-206ENST00000598471 SLAQ13239 276 aa11.06□□□□□ -0.64
UPF1-206ENST00000598471 FAM74A4Q5TZK3 123 aa11.06□□□□□ -0.64
UPF1-206ENST00000598471 B9D2Q9BPU9 175 aa11.06□□□□□ -0.64
UPF1-206ENST00000598471 A0A087WWL8 130 aa11.05□□□□□ -0.64
UPF1-206ENST00000598471 TRAV4A0A0B4J268 109 aa11.05□□□□□ -0.64
UPF1-206ENST00000598471 CIDEAO60543 219 aa11.05□□□□□ -0.64
UPF1-206ENST00000598471 SPART-AS1P0CW21 52 aa11.05□□□□□ -0.64
UPF1-206ENST00000598471 RAB4AP20338 218 aa11.05□□□□□ -0.64
UPF1-206ENST00000598471 FAM222AQ5U5X8 452 aa11.05□□□□□ -0.64
UPF1-206ENST00000598471 CFAP126Q5VTH2 177 aa11.05□□□□□ -0.64
UPF1-206ENST00000598471 OR4C5Q8NGB2 326 aa11.05□□□□□ -0.64
UPF1-206ENST00000598471 MUC4Q99102 2169 aa11.05□□□□□ -0.64
UPF1-206ENST00000598471 C11orf68Q9H3H3 251 aaKnown RBP11.05□□□□□ -0.64
UPF1-206ENST00000598471 JPT2Q9H910 190 aa11.05□□□□□ -0.64
UPF1-206ENST00000598471 F5H697 171 aa11.04□□□□□ -0.64
UPF1-206ENST00000598471 DEFB4AO15263 64 aa11.04□□□□□ -0.64
UPF1-206ENST00000598471 PPBPP02775 128 aa11.04□□□□□ -0.64
UPF1-206ENST00000598471 CRYGDP07320 174 aa11.04□□□□□ -0.64
UPF1-206ENST00000598471 CKS2P33552 79 aa11.04□□□□□ -0.64
UPF1-206ENST00000598471 RAB5BP61020 215 aa11.04□□□□□ -0.64
UPF1-206ENST00000598471 ZNF56Q15929 161 aa11.04□□□□□ -0.64
UPF1-206ENST00000598471 MRPL51Q4U2R6 128 aaKnown RBP11.04□□□□□ -0.64
UPF1-206ENST00000598471 ZFP2Q6ZN57 461 aa11.04□□□□□ -0.64
UPF1-206ENST00000598471 MRAP2Q96G30 205 aa11.04□□□□□ -0.64
UPF1-206ENST00000598471 RNF185Q96GF1 192 aa11.04□□□□□ -0.64
UPF1-206ENST00000598471 DKK2Q9UBU2 259 aa11.04□□□□□ -0.64
UPF1-206ENST00000598471 KIF25-AS1Q9Y6Z4 181 aa11.04□□□□□ -0.64
UPF1-206ENST00000598471 DAD1P61803 113 aa11.03□□□□□ -0.64
UPF1-206ENST00000598471 KIAA1644Q3SXP7 199 aa11.03□□□□□ -0.64
UPF1-206ENST00000598471 ORMDL3Q8N138 153 aa11.03□□□□□ -0.64
UPF1-206ENST00000598471 LINC00612Q8N6U2 182 aa11.03□□□□□ -0.64
UPF1-206ENST00000598471 SAMD10Q9BYL1 202 aa11.03□□□□□ -0.64
UPF1-206ENST00000598471 DEFB130BP0DP73 79 aa11.02□□□□□ -0.65
UPF1-206ENST00000598471 DEFB130AP0DP74 79 aa11.02□□□□□ -0.65
UPF1-206ENST00000598471 POM121L12Q8N7R1 296 aa11.02□□□□□ -0.65
UPF1-206ENST00000598471 C18orf15Q96N68 181 aa11.02□□□□□ -0.65
UPF1-206ENST00000598471 D6R8Y8 96 aa11.01□□□□□ -0.65
UPF1-206ENST00000598471 H7C1H1 209 aa11.01□□□□□ -0.65
UPF1-206ENST00000598471 PHOX2AO14813 284 aa11.01□□□□□ -0.65
UPF1-206ENST00000598471 PPP1R17O96001 155 aa11.01□□□□□ -0.65
UPF1-206ENST00000598471 SRIP30626 198 aa11.01□□□□□ -0.65
UPF1-206ENST00000598471 LINC00315P59091 139 aa11.01□□□□□ -0.65
UPF1-206ENST00000598471 LAMTOR2Q9Y2Q5 125 aa11.01□□□□□ -0.65
UPF1-206ENST00000598471 MEGF8Q7Z7M0 2845 aa11□□□□□ -0.65
UPF1-206ENST00000598471 IGHV3-53P01767 116 aa11□□□□□ -0.65
UPF1-206ENST00000598471 NHLRC4P0CG21 123 aaPredicted RBP11□□□□□ -0.65
UPF1-206ENST00000598471 UFSP1Q6NVU6 142 aa11□□□□□ -0.65
UPF1-206ENST00000598471 PRELID3AQ96N28 172 aa11□□□□□ -0.65
UPF1-206ENST00000598471 U3KQK5 164 aa11□□□□□ -0.65
UPF1-206ENST00000598471 PRKDCP78527 4128 aaKnown RBP11□□□□□ -0.65
UPF1-206ENST00000598471 IGHV3-73A0A0B4J1V6 119 aa10.99□□□□□ -0.65
UPF1-206ENST00000598471 NCR2O95944 276 aa10.99□□□□□ -0.65
UPF1-206ENST00000598471 SUMO4Q6EEV6 95 aa10.99□□□□□ -0.65
UPF1-206ENST00000598471 ZNF479Q96JC4 524 aa10.99□□□□□ -0.65
UPF1-206ENST00000598471 ALKBH7Q9BT30 221 aaPredicted RBP10.99□□□□□ -0.65
UPF1-206ENST00000598471 CELA1Q9UNI1 258 aa10.99□□□□□ -0.65
UPF1-206ENST00000598471 NBEAL2Q6ZNJ1 2754 aa10.98□□□□□ -0.65
UPF1-206ENST00000598471 TRAV26-2A0A0B4J265 109 aa10.98□□□□□ -0.65
UPF1-206ENST00000598471 TRGV4A0A0C4DH28 118 aa10.98□□□□□ -0.65
UPF1-206ENST00000598471 A0A0J9YWU9 116 aa10.98□□□□□ -0.65
UPF1-206ENST00000598471 SMKR1H3BMG3 65 aa10.98□□□□□ -0.65
UPF1-206ENST00000598471 EDA2RQ9HAV5 297 aa10.98□□□□□ -0.65
UPF1-206ENST00000598471 HIST1H2BKO60814 126 aa10.97□□□□□ -0.65
UPF1-206ENST00000598471 ATP5G1P05496 136 aa10.97□□□□□ -0.65
UPF1-206ENST00000598471 HIST1H2BJP06899 126 aa10.97□□□□□ -0.65
UPF1-206ENST00000598471 HIST1H2BOP23527 126 aa10.97□□□□□ -0.65
UPF1-206ENST00000598471 HIST1H2BBP33778 126 aa10.97□□□□□ -0.65
UPF1-206ENST00000598471 HIST1H2BDP58876 126 aa10.97□□□□□ -0.65
UPF1-206ENST00000598471 HIST1H2BCP62807 126 aa10.97□□□□□ -0.65
UPF1-206ENST00000598471 HIST2H2BEQ16778 126 aa10.97□□□□□ -0.65
UPF1-206ENST00000598471 OR10J3Q5JRS4 329 aa10.97□□□□□ -0.65
UPF1-206ENST00000598471 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.97□□□□□ -0.65
UPF1-206ENST00000598471 HIST1H2BHQ93079 126 aa10.97□□□□□ -0.65
UPF1-206ENST00000598471 HIST1H2BNQ99877 126 aa10.97□□□□□ -0.65
UPF1-206ENST00000598471 HIST1H2BMQ99879 126 aa10.97□□□□□ -0.65
UPF1-206ENST00000598471 MAP1LC3AQ9H492 121 aa10.96□□□□□ -0.65
UPF1-206ENST00000598471 TMA7Q9Y2S6 64 aaKnown RBP10.96□□□□□ -0.65
UPF1-206ENST00000598471 M0QY20 66 aa10.95□□□□□ -0.66
UPF1-206ENST00000598471 TNFRSF6BO95407 300 aa10.95□□□□□ -0.66
UPF1-206ENST00000598471 NPYP01303 97 aa10.95□□□□□ -0.66
UPF1-206ENST00000598471 GATA1P15976 413 aaPredicted RBP10.95□□□□□ -0.66
UPF1-206ENST00000598471 C11orf45Q8TAV5 145 aa10.95□□□□□ -0.66
UPF1-206ENST00000598471 TRBV6-4A0A1B0GX49 114 aa10.94□□□□□ -0.66
UPF1-206ENST00000598471 K7EQD1 137 aa10.94□□□□□ -0.66
UPF1-206ENST00000598471 S100A6P06703 90 aa10.94□□□□□ -0.66
UPF1-206ENST00000598471 Q0VG73 95 aa10.94□□□□□ -0.66
UPF1-206ENST00000598471 RHOHQ15669 191 aa10.94□□□□□ -0.66
UPF1-206ENST00000598471 BAGE3Q86Y29 109 aa10.94□□□□□ -0.66
UPF1-206ENST00000598471 NRACQ8N912 160 aa10.94□□□□□ -0.66
UPF1-206ENST00000598471 C18orf32Q8TCD1 76 aa10.94□□□□□ -0.66
UPF1-206ENST00000598471 RPL39LQ96EH5 51 aaKnown RBP10.94□□□□□ -0.66
UPF1-206ENST00000598471 C20orf78Q9BR46 151 aa10.94□□□□□ -0.66
UPF1-206ENST00000598471 ST20Q9HBF5 79 aa10.94□□□□□ -0.66
UPF1-206ENST00000598471 NIT2Q9NQR4 276 aa10.94□□□□□ -0.66
UPF1-206ENST00000598471 DNAH9Q9NYC9 4486 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms