RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 SULT1A2P50226 295 aa9.89□□□□□ -0.83
CLN3-236ENST00000568558 NKX2-5P52952 324 aaPredicted RBP9.89□□□□□ -0.83
CLN3-236ENST00000568558 SAPCD1Q5SSQ6 148 aa9.89□□□□□ -0.83
CLN3-236ENST00000568558 SLC51BQ86UW2 128 aa9.89□□□□□ -0.83
CLN3-236ENST00000568558 HIST1H2BAQ96A08 127 aa9.89□□□□□ -0.83
CLN3-236ENST00000568558 TRAV8-3A0A0A6YYJ7 113 aa9.88□□□□□ -0.83
CLN3-236ENST00000568558 GAGE12JA6NER3 117 aa9.88□□□□□ -0.83
CLN3-236ENST00000568558 GAGE1Q13065 139 aa9.88□□□□□ -0.83
CLN3-236ENST00000568558 GAGE4Q13068 117 aa9.88□□□□□ -0.83
CLN3-236ENST00000568558 GAGE5Q13069 117 aa9.88□□□□□ -0.83
CLN3-236ENST00000568558 GAGE13Q4V321 117 aa9.88□□□□□ -0.83
CLN3-236ENST00000568558 PIK3CD-AS1Q5SR53 167 aa9.88□□□□□ -0.83
CLN3-236ENST00000568558 Q6ZSA8 131 aa9.88□□□□□ -0.83
CLN3-236ENST00000568558 SCO2A0A1W2PP80 73 aa9.87□□□□□ -0.83
CLN3-236ENST00000568558 S100A4P26447 101 aaKnown RBP9.87□□□□□ -0.83
CLN3-236ENST00000568558 CRIP1P50238 77 aa9.87□□□□□ -0.83
CLN3-236ENST00000568558 EIF5AL1Q6IS14 154 aaKnown RBP9.87□□□□□ -0.83
CLN3-236ENST00000568558 DAZ4Q86SG3 579 aaKnown RBP9.87□□□□□ -0.83
CLN3-236ENST00000568558 DAZ3Q9NR90 486 aaKnown RBP9.87□□□□□ -0.83
CLN3-236ENST00000568558 Q9UF83 564 aa9.87□□□□□ -0.83
CLN3-236ENST00000568558 TRAV1-1A0A0B4J248 108 aa9.86□□□□□ -0.83
CLN3-236ENST00000568558 LECT2O14960 151 aa9.86□□□□□ -0.83
CLN3-236ENST00000568558 RAB5CP51148 216 aa9.86□□□□□ -0.83
CLN3-236ENST00000568558 TOR2AQ5JU69 321 aa9.86□□□□□ -0.83
CLN3-236ENST00000568558 UFSP1Q6NVU6 142 aa9.86□□□□□ -0.83
CLN3-236ENST00000568558 ZC2HC1AQ96GY0 325 aa9.86□□□□□ -0.83
CLN3-236ENST00000568558 JPT2Q9H910 190 aa9.86□□□□□ -0.83
CLN3-236ENST00000568558 IL36BQ9NZH7 164 aa9.86□□□□□ -0.83
CLN3-236ENST00000568558 GNG13Q9P2W3 67 aa9.86□□□□□ -0.83
CLN3-236ENST00000568558 A0A087WWC5 75 aa9.85□□□□□ -0.83
CLN3-236ENST00000568558 FABP5P3A8MUU1 101 aa9.85□□□□□ -0.83
CLN3-236ENST00000568558 ASIPP42127 132 aa9.85□□□□□ -0.83
CLN3-236ENST00000568558 AKR1C3P42330 323 aa9.85□□□□□ -0.83
CLN3-236ENST00000568558 C14orf178Q8N769 122 aaPredicted RBP9.85□□□□□ -0.83
CLN3-236ENST00000568558 FMC1Q96HJ9 113 aa9.85□□□□□ -0.83
CLN3-236ENST00000568558 TCEAL7Q9BRU2 100 aa9.85□□□□□ -0.83
CLN3-236ENST00000568558 SAMD10Q9BYL1 202 aa9.85□□□□□ -0.83
CLN3-236ENST00000568558 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.84□□□□□ -0.83
CLN3-236ENST00000568558 TRBV6-1A0A0K0K1D8 114 aa9.84□□□□□ -0.83
CLN3-236ENST00000568558 H3BVH4 76 aa9.84□□□□□ -0.83
CLN3-236ENST00000568558 J3QL48 77 aa9.84□□□□□ -0.83
CLN3-236ENST00000568558 LTAP01374 205 aa9.84□□□□□ -0.83
CLN3-236ENST00000568558 PLA2G1BP04054 148 aaKnown RBP9.84□□□□□ -0.83
CLN3-236ENST00000568558 UBE2G1P62253 170 aa9.84□□□□□ -0.83
CLN3-236ENST00000568558 COX8CQ7Z4L0 72 aa9.84□□□□□ -0.83
CLN3-236ENST00000568558 LINC00528Q8N1L1 170 aa9.84□□□□□ -0.83
CLN3-236ENST00000568558 FAT3Q8TDW7 4589 aa9.84□□□□□ -0.83
CLN3-236ENST00000568558 LRP1Q07954 4544 aaKnown RBP9.84□□□□□ -0.83
CLN3-236ENST00000568558 B4DEV8 164 aa9.83□□□□□ -0.84
CLN3-236ENST00000568558 RHODO00212 210 aa9.83□□□□□ -0.84
CLN3-236ENST00000568558 SH2D1AO60880 128 aa9.83□□□□□ -0.84
CLN3-236ENST00000568558 DNLZQ5SXM8 178 aa9.83□□□□□ -0.84
CLN3-236ENST00000568558 DMRTA1Q5VZB9 504 aa9.83□□□□□ -0.84
CLN3-236ENST00000568558 ALKAL2Q6UX46 152 aa9.83□□□□□ -0.84
CLN3-236ENST00000568558 MANBALQ9NQG1 85 aa9.83□□□□□ -0.84
CLN3-236ENST00000568558 ZFP30Q9Y2G7 519 aa9.83□□□□□ -0.84
CLN3-236ENST00000568558 COX11Q9Y6N1 276 aa9.83□□□□□ -0.84
CLN3-236ENST00000568558 NIT1Q86X76 327 aa9.82□□□□□ -0.84
CLN3-236ENST00000568558 SYT8Q8NBV8 401 aa9.82□□□□□ -0.84
CLN3-236ENST00000568558 BAALCQ8WXS3 180 aa9.82□□□□□ -0.84
CLN3-236ENST00000568558 DERL1Q9BUN8 251 aa9.82□□□□□ -0.84
CLN3-236ENST00000568558 KRBOX1C9JBD0 128 aa9.81□□□□□ -0.84
CLN3-236ENST00000568558 M0R036 132 aa9.81□□□□□ -0.84
CLN3-236ENST00000568558 ARMS2P0C7Q2 107 aa9.81□□□□□ -0.84
CLN3-236ENST00000568558 ZNF674Q2M3X9 581 aa9.81□□□□□ -0.84
CLN3-236ENST00000568558 LINC01620Q4KN68 170 aa9.81□□□□□ -0.84
CLN3-236ENST00000568558 RMI2Q96E14 147 aa9.81□□□□□ -0.84
CLN3-236ENST00000568558 DNAJC30Q96LL9 226 aa9.81□□□□□ -0.84
CLN3-236ENST00000568558 URGCP-MRPS24S4R325 110 aa9.81□□□□□ -0.84
CLN3-236ENST00000568558 FAM162BQ5T6X4 162 aa9.8□□□□□ -0.84
CLN3-236ENST00000568558 FAM74A4Q5TZK3 123 aa9.8□□□□□ -0.84
CLN3-236ENST00000568558 SCXQ7RTU7 201 aa9.8□□□□□ -0.84
CLN3-236ENST00000568558 C11orf52Q96A22 123 aa9.8□□□□□ -0.84
CLN3-236ENST00000568558 MLST8Q9BVC4 326 aa9.8□□□□□ -0.84
CLN3-236ENST00000568558 PKHD1L1Q86WI1 4243 aa9.79□□□□□ -0.84
CLN3-236ENST00000568558 IGKV2D-24A0A075B6R9 120 aa9.79□□□□□ -0.84
CLN3-236ENST00000568558 GRIFINA4D1Z8 144 aa9.79□□□□□ -0.84
CLN3-236ENST00000568558 KRTAP29-1A8MX34 341 aaPredicted RBP9.79□□□□□ -0.84
CLN3-236ENST00000568558 TEX46H3BTG2 121 aa9.79□□□□□ -0.84
CLN3-236ENST00000568558 S100A9P06702 114 aaKnown RBP9.79□□□□□ -0.84
CLN3-236ENST00000568558 RPL35P42766 123 aaKnown RBP9.79□□□□□ -0.84
CLN3-236ENST00000568558 BAGE2Q86Y30 109 aa9.79□□□□□ -0.84
CLN3-236ENST00000568558 Q8N976 141 aa9.79□□□□□ -0.84
CLN3-236ENST00000568558 DEFB104AQ8WTQ1 72 aa9.79□□□□□ -0.84
CLN3-236ENST00000568558 SFRP2Q96HF1 295 aa9.79□□□□□ -0.84
CLN3-236ENST00000568558 KLK12Q9UKR0 248 aa9.79□□□□□ -0.84
CLN3-236ENST00000568558 A0A087WWL8 130 aa9.78□□□□□ -0.84
CLN3-236ENST00000568558 TMSB15BA0A087X1C1 80 aa9.78□□□□□ -0.84
CLN3-236ENST00000568558 RBFOX3A6NFN3 312 aa9.78□□□□□ -0.84
CLN3-236ENST00000568558 BCL2P10415 239 aa9.78□□□□□ -0.84
CLN3-236ENST00000568558 MEF2BQ02080 365 aaPredicted RBP9.78□□□□□ -0.84
CLN3-236ENST00000568558 CHCHD7Q9BUK0 85 aa9.78□□□□□ -0.84
CLN3-236ENST00000568558 PHLDA3Q9Y5J5 127 aa9.78□□□□□ -0.84
CLN3-236ENST00000568558 M0R381 172 aa9.77□□□□□ -0.85
CLN3-236ENST00000568558 RPL19P84098 196 aaKnown RBP9.77□□□□□ -0.85
CLN3-236ENST00000568558 LINC01559Q495D7 138 aa9.77□□□□□ -0.85
CLN3-236ENST00000568558 UBE2WQ96B02 151 aa9.77□□□□□ -0.85
CLN3-236ENST00000568558 A0A087WX48 190 aa9.76□□□□□ -0.85
CLN3-236ENST00000568558 TRBV10-1A0A0K0K1A3 114 aa9.76□□□□□ -0.85
CLN3-236ENST00000568558 RAB19A4D1S5 217 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 1128.2 ms