RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 CSNK1G2-AS1Q8NCQ2 148 aa15.44■□□□□ 0.06
CLN3-209ENST00000561689 CSTL1Q9H114 145 aa15.44■□□□□ 0.06
CLN3-209ENST00000561689 AMTP48728 403 aa15.43■□□□□ 0.06
CLN3-209ENST00000561689 RNASEKQ6P5S7 137 aaKnown RBP15.43■□□□□ 0.06
CLN3-209ENST00000561689 NIT1Q86X76 327 aa15.43■□□□□ 0.06
CLN3-209ENST00000561689 FAM19A2Q8N3H0 131 aa15.43■□□□□ 0.06
CLN3-209ENST00000561689 GOLT1BQ9Y3E0 138 aa15.43■□□□□ 0.06
CLN3-209ENST00000561689 A0A087WWL8 130 aa15.42■□□□□ 0.06
CLN3-209ENST00000561689 NPYP01303 97 aa15.42■□□□□ 0.06
CLN3-209ENST00000561689 MGPP08493 103 aa15.42■□□□□ 0.06
CLN3-209ENST00000561689 URB1-AS1Q96HZ7 61 aa15.42■□□□□ 0.06
CLN3-209ENST00000561689 PPBPP02775 128 aa15.42■□□□□ 0.06
CLN3-209ENST00000561689 KIF25-AS1Q9Y6Z4 181 aa15.42■□□□□ 0.06
CLN3-209ENST00000561689 LOC389332A0A1B0GUA5 103 aa15.41■□□□□ 0.06
CLN3-209ENST00000561689 TSTD3H0UI37 97 aa15.41■□□□□ 0.06
CLN3-209ENST00000561689 SMIM17P0DL12 118 aa15.41■□□□□ 0.06
CLN3-209ENST00000561689 DDTP30046 118 aa15.4■□□□□ 0.06
CLN3-209ENST00000561689 FAM74A4Q5TZK3 123 aa15.4■□□□□ 0.06
CLN3-209ENST00000561689 CMYA5Q8N3K9 4069 aa15.39■□□□□ 0.05
CLN3-209ENST00000561689 M0R2P5 195 aa15.39■□□□□ 0.05
CLN3-209ENST00000561689 LINC00315P59091 139 aa15.39■□□□□ 0.05
CLN3-209ENST00000561689 KRTAP10-11P60412 298 aa15.39■□□□□ 0.05
CLN3-209ENST00000561689 TNFRSF6BO95407 300 aa15.38■□□□□ 0.05
CLN3-209ENST00000561689 RNASE8Q8TDE3 154 aaKnown RBP15.38■□□□□ 0.05
CLN3-209ENST00000561689 LINC00614P0C842 121 aa15.38■□□□□ 0.05
CLN3-209ENST00000561689 IFI27P40305 119 aaPredicted RBP15.38■□□□□ 0.05
CLN3-209ENST00000561689 ZNF705AQ6ZN79 300 aaPredicted RBP15.38■□□□□ 0.05
CLN3-209ENST00000561689 Q8N976 141 aa15.38■□□□□ 0.05
CLN3-209ENST00000561689 PRSS3P2Q8NHM4 247 aa15.38■□□□□ 0.05
CLN3-209ENST00000561689 MRAP2Q96G30 205 aa15.38■□□□□ 0.05
CLN3-209ENST00000561689 KRTDAPP60985 99 aa15.37■□□□□ 0.05
CLN3-209ENST00000561689 MDFIQ99750 246 aa15.37■□□□□ 0.05
CLN3-209ENST00000561689 MRPL16Q9NX20 251 aaKnown RBP15.37■□□□□ 0.05
CLN3-209ENST00000561689 HSBP1O75506 76 aa15.36■□□□□ 0.05
CLN3-209ENST00000561689 CRYGDP07320 174 aa15.36■□□□□ 0.05
CLN3-209ENST00000561689 ANK2Q01484 3957 aa15.36■□□□□ 0.05
CLN3-209ENST00000561689 NRACQ8N912 160 aa15.36■□□□□ 0.05
CLN3-209ENST00000561689 TMEM263Q8WUH6 116 aaKnown RBP15.36■□□□□ 0.05
CLN3-209ENST00000561689 F5H697 171 aa15.36■□□□□ 0.05
CLN3-209ENST00000561689 PMCHL1Q16048 86 aa15.36■□□□□ 0.05
CLN3-209ENST00000561689 SPXQ9BT56 116 aa15.36■□□□□ 0.05
CLN3-209ENST00000561689 LAMTOR2Q9Y2Q5 125 aa15.36■□□□□ 0.05
CLN3-209ENST00000561689 POM121L12Q8N7R1 296 aa15.35■□□□□ 0.05
CLN3-209ENST00000561689 C14orf144Q96I85 54 aa15.35■□□□□ 0.05
CLN3-209ENST00000561689 IGHV4-30-4P0DP06 118 aa15.35■□□□□ 0.05
CLN3-209ENST00000561689 DEFA6Q01524 100 aa15.35■□□□□ 0.05
CLN3-209ENST00000561689 CHCHD1Q96BP2 118 aaKnown RBP15.35■□□□□ 0.05
CLN3-209ENST00000561689 MAP1LC3AQ9H492 121 aa15.35■□□□□ 0.05
CLN3-209ENST00000561689 EGFEM1PQ0D2K5 195 aa15.34■□□□□ 0.05
CLN3-209ENST00000561689 TEX43Q6ZNM6 134 aa15.34■□□□□ 0.05
CLN3-209ENST00000561689 FA2HQ7L5A8 372 aa15.34■□□□□ 0.05
CLN3-209ENST00000561689 RASL10AQ92737 203 aa15.34■□□□□ 0.05
CLN3-209ENST00000561689 RPL39LQ96EH5 51 aaKnown RBP15.34■□□□□ 0.05
CLN3-209ENST00000561689 G3V4G9 280 aa15.33■□□□□ 0.05
CLN3-209ENST00000561689 RRN3P1Q2M238 152 aa15.33■□□□□ 0.05
CLN3-209ENST00000561689 SUMO4Q6EEV6 95 aa15.33■□□□□ 0.05
CLN3-209ENST00000561689 IL17DQ8TAD2 202 aa15.33■□□□□ 0.05
CLN3-209ENST00000561689 NBEAL2Q6ZNJ1 2754 aa15.33■□□□□ 0.04
CLN3-209ENST00000561689 IGHV3-73A0A0B4J1V6 119 aa15.33■□□□□ 0.04
CLN3-209ENST00000561689 C3orf79P0CE67 100 aa15.33■□□□□ 0.04
CLN3-209ENST00000561689 ZNF56Q15929 161 aa15.33■□□□□ 0.04
CLN3-209ENST00000561689 PTH2Q96A98 100 aa15.33■□□□□ 0.04
CLN3-209ENST00000561689 C16orf74Q96GX8 76 aa15.32■□□□□ 0.04
CLN3-209ENST00000561689 AP5S1Q9NUS5 200 aa15.32■□□□□ 0.04
CLN3-209ENST00000561689 TRGV1A0A0A0MS02 117 aa15.31■□□□□ 0.04
CLN3-209ENST00000561689 KIR2DL5BA0A0G2JN68 375 aa15.31■□□□□ 0.04
CLN3-209ENST00000561689 KIR2DL5BA0A0G2JPC4 375 aa15.31■□□□□ 0.04
CLN3-209ENST00000561689 PLAC8L1A1L4L8 177 aa15.31■□□□□ 0.04
CLN3-209ENST00000561689 APOC4P55056 127 aa15.31■□□□□ 0.04
CLN3-209ENST00000561689 KIR2DL5AQ8N109 375 aa15.31■□□□□ 0.04
CLN3-209ENST00000561689 KIR2DL5BQ8NHK3 375 aa15.31■□□□□ 0.04
CLN3-209ENST00000561689 NOP10Q9NPE3 64 aaKnown RBP15.31■□□□□ 0.04
CLN3-209ENST00000561689 PIK3CD-AS1Q5SR53 167 aa15.31■□□□□ 0.04
CLN3-209ENST00000561689 IGHV1-24A0A0C4DH33 117 aa15.3■□□□□ 0.04
CLN3-209ENST00000561689 A8MWV9 139 aa15.3■□□□□ 0.04
CLN3-209ENST00000561689 CFAP126Q5VTH2 177 aa15.3■□□□□ 0.04
CLN3-209ENST00000561689 DEFB135Q30KP9 77 aa15.29■□□□□ 0.04
CLN3-209ENST00000561689 Q6ZTI0 123 aa15.29■□□□□ 0.04
CLN3-209ENST00000561689 EMP1P54849 157 aa15.28■□□□□ 0.04
CLN3-209ENST00000561689 DAZ2Q13117 558 aaKnown RBP15.27■□□□□ 0.04
CLN3-209ENST00000561689 UFSP1Q6NVU6 142 aa15.27■□□□□ 0.04
CLN3-209ENST00000561689 PAM16Q9Y3D7 125 aa15.27■□□□□ 0.04
CLN3-209ENST00000561689 X6R8D5 127 aa15.27■□□□□ 0.04
CLN3-209ENST00000561689 M0QY20 66 aa15.27■□□□□ 0.03
CLN3-209ENST00000561689 SUMO2P61956 95 aaKnown RBP15.27■□□□□ 0.03
CLN3-209ENST00000561689 NDUFAF3Q9BU61 184 aa15.27■□□□□ 0.03
CLN3-209ENST00000561689 NXT2Q9NPJ8 142 aaKnown RBP15.27■□□□□ 0.03
CLN3-209ENST00000561689 IGLV2-18A0A075B6J9 118 aa15.26■□□□□ 0.03
CLN3-209ENST00000561689 Q8N8P6 123 aa15.26■□□□□ 0.03
CLN3-209ENST00000561689 PRSS47A8MTI9 375 aa15.25■□□□□ 0.03
CLN3-209ENST00000561689 RS1O15537 224 aa15.25■□□□□ 0.03
CLN3-209ENST00000561689 C20orf78Q9BR46 151 aa15.25■□□□□ 0.03
CLN3-209ENST00000561689 ZMAT5Q9UDW3 170 aaKnown RBP15.25■□□□□ 0.03
CLN3-209ENST00000561689 PPP1R17O96001 155 aa15.25■□□□□ 0.03
CLN3-209ENST00000561689 LGALS9BQ3B8N2 356 aa15.25■□□□□ 0.03
CLN3-209ENST00000561689 SAMD5Q5TGI4 173 aa15.25■□□□□ 0.03
CLN3-209ENST00000561689 Q6ZSN1 163 aa15.25■□□□□ 0.03
CLN3-209ENST00000561689 LINC00173Q6ZV60 143 aa15.25■□□□□ 0.03
CLN3-209ENST00000561689 VAMP8Q9BV40 100 aa15.25■□□□□ 0.03
CLN3-209ENST00000561689 SMIM2Q9BVW6 85 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms