RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 GAGE4Q13068 117 aa12.42□□□□□ -0.42
TPM1-228ENST00000560975 MUSTN1Q8IVN3 82 aa12.42□□□□□ -0.42
TPM1-228ENST00000560975 LINC00527Q9UJ94 153 aa12.42□□□□□ -0.42
TPM1-228ENST00000560975 NBASA2RRP1 2371 aa12.42□□□□□ -0.42
TPM1-228ENST00000560975 RNASE3P12724 160 aaKnown RBP12.42□□□□□ -0.42
TPM1-228ENST00000560975 EEF1AKMT3Q96AZ1 226 aa12.42□□□□□ -0.42
TPM1-228ENST00000560975 M0R1W7 72 aa12.41□□□□□ -0.42
TPM1-228ENST00000560975 IFITM1P13164 125 aa12.41□□□□□ -0.42
TPM1-228ENST00000560975 PIP4P1Q86T03 277 aa12.41□□□□□ -0.42
TPM1-228ENST00000560975 TMEM263Q8WUH6 116 aaKnown RBP12.41□□□□□ -0.42
TPM1-228ENST00000560975 PRR30Q53SZ7 412 aaPredicted RBP12.41□□□□□ -0.42
TPM1-228ENST00000560975 ZNF256Q9Y2P7 627 aaPredicted RBP12.41□□□□□ -0.42
TPM1-228ENST00000560975 GRNP28799 593 aaKnown RBP12.4□□□□□ -0.42
TPM1-228ENST00000560975 IGHV1-69DA0A0B4J2H0 117 aa12.4□□□□□ -0.42
TPM1-228ENST00000560975 SUMO4Q6EEV6 95 aa12.4□□□□□ -0.42
TPM1-228ENST00000560975 SMIM20Q8N5G0 67 aa12.4□□□□□ -0.42
TPM1-228ENST00000560975 C15orf53Q8NAA6 179 aa12.4□□□□□ -0.42
TPM1-228ENST00000560975 ITLN2Q8WWU7 325 aaPredicted RBP12.4□□□□□ -0.42
TPM1-228ENST00000560975 LINC00477Q96M19 166 aa12.4□□□□□ -0.42
TPM1-228ENST00000560975 TRAV8-4A0A0B4J246 113 aa12.4□□□□□ -0.43
TPM1-228ENST00000560975 LINC01620Q4KN68 170 aa12.4□□□□□ -0.43
TPM1-228ENST00000560975 C9orf139Q6ZV77 190 aa12.4□□□□□ -0.43
TPM1-228ENST00000560975 PPP1R17O96001 155 aa12.39□□□□□ -0.43
TPM1-228ENST00000560975 EBI3Q14213 229 aa12.39□□□□□ -0.43
TPM1-228ENST00000560975 FAM159AQ6UWV7 190 aa12.39□□□□□ -0.43
TPM1-228ENST00000560975 ZFHX3Q15911 3703 aa12.39□□□□□ -0.43
TPM1-228ENST00000560975 SDHAF1A6NFY7 115 aa12.39□□□□□ -0.43
TPM1-228ENST00000560975 ZNF876PQ49A33 203 aa12.39□□□□□ -0.43
TPM1-228ENST00000560975 FAM74A4Q5TZK3 123 aa12.39□□□□□ -0.43
TPM1-228ENST00000560975 ZNF580Q9UK33 172 aa12.39□□□□□ -0.43
TPM1-228ENST00000560975 POLR2KP53803 58 aaKnown RBP12.38□□□□□ -0.43
TPM1-228ENST00000560975 LINC00315P59091 139 aa12.38□□□□□ -0.43
TPM1-228ENST00000560975 U3KQE9 123 aa12.38□□□□□ -0.43
TPM1-228ENST00000560975 TRBV7-9A0A0J9YWB2 115 aa12.38□□□□□ -0.43
TPM1-228ENST00000560975 ADARB2-AS1A8MUL3 147 aa12.38□□□□□ -0.43
TPM1-228ENST00000560975 HERV-K104P63124 156 aa12.38□□□□□ -0.43
TPM1-228ENST00000560975 ATXN8Q156A1 80 aa12.38□□□□□ -0.43
TPM1-228ENST00000560975 SHISA2Q6UWI4 295 aa12.38□□□□□ -0.43
TPM1-228ENST00000560975 TMEM141Q96I45 108 aa12.38□□□□□ -0.43
TPM1-228ENST00000560975 ODF3Q96PU9 254 aa12.38□□□□□ -0.43
TPM1-228ENST00000560975 LENEPQ9Y5L5 61 aa12.38□□□□□ -0.43
TPM1-228ENST00000560975 VCYO14598 125 aa12.37□□□□□ -0.43
TPM1-228ENST00000560975 UNQ9165/PRO28630Q6UXU0 137 aa12.37□□□□□ -0.43
TPM1-228ENST00000560975 KIF25-AS1Q9Y6Z4 181 aa12.37□□□□□ -0.43
TPM1-228ENST00000560975 ZFP36P26651 326 aaKnown RBP12.36□□□□□ -0.43
TPM1-228ENST00000560975 SPTA1P02549 2419 aa12.36□□□□□ -0.43
TPM1-228ENST00000560975 TIMM17AQ99595 171 aa12.36□□□□□ -0.43
TPM1-228ENST00000560975 TRBV7-1A0A0A6YYK4 115 aa12.36□□□□□ -0.43
TPM1-228ENST00000560975 TRBV12-3P01733 135 aa12.36□□□□□ -0.43
TPM1-228ENST00000560975 DEFB123Q8N688 67 aa12.36□□□□□ -0.43
TPM1-228ENST00000560975 OVOL1O14753 267 aa12.35□□□□□ -0.43
TPM1-228ENST00000560975 TRIAP1O43715 76 aa12.35□□□□□ -0.43
TPM1-228ENST00000560975 P0DMU3 169 aa12.35□□□□□ -0.43
TPM1-228ENST00000560975 FAM231AP0DMU4 169 aa12.35□□□□□ -0.43
TPM1-228ENST00000560975 FAM231CP0DMU5 169 aa12.35□□□□□ -0.43
TPM1-228ENST00000560975 C3orf56Q8N813 242 aa12.35□□□□□ -0.43
TPM1-228ENST00000560975 AKAP6Q13023 2319 aa12.34□□□□□ -0.43
TPM1-228ENST00000560975 TLN1Q9Y490 2541 aaKnown RBP12.34□□□□□ -0.43
TPM1-228ENST00000560975 A0A0B4J2C4 111 aa12.34□□□□□ -0.43
TPM1-228ENST00000560975 H3BMM0 161 aa12.34□□□□□ -0.43
TPM1-228ENST00000560975 LEPROTO15243 131 aa12.34□□□□□ -0.43
TPM1-228ENST00000560975 PRSS2P07478 247 aa12.34□□□□□ -0.43
TPM1-228ENST00000560975 MINOS1Q5TGZ0 78 aa12.34□□□□□ -0.43
TPM1-228ENST00000560975 Q8NA96 180 aa12.34□□□□□ -0.43
TPM1-228ENST00000560975 UBE2WQ96B02 151 aa12.34□□□□□ -0.43
TPM1-228ENST00000560975 MINOS1-NBL1R4GNA1 71 aa12.34□□□□□ -0.43
TPM1-228ENST00000560975 RIF1Q5UIP0 2472 aaKnown RBP12.34□□□□□ -0.43
TPM1-228ENST00000560975 IGHV4OR15-8A0A075B7B6 117 aa12.34□□□□□ -0.43
TPM1-228ENST00000560975 A0A087WW49 117 aa12.34□□□□□ -0.43
TPM1-228ENST00000560975 TMEM223A0PJW6 202 aa12.34□□□□□ -0.43
TPM1-228ENST00000560975 OOSP1A8MZH6 123 aa12.34□□□□□ -0.43
TPM1-228ENST00000560975 RPL32P62910 135 aaKnown RBP12.34□□□□□ -0.43
TPM1-228ENST00000560975 TMEM219Q86XT9 240 aa12.34□□□□□ -0.43
TPM1-228ENST00000560975 NPC2P61916 151 aa12.33□□□□□ -0.44
TPM1-228ENST00000560975 C2orf82Q6UX34 121 aa12.33□□□□□ -0.44
TPM1-228ENST00000560975 A0A0J9YXV3 536 aa12.33□□□□□ -0.44
TPM1-228ENST00000560975 PTPRZ1P23471 2315 aaPredicted RBP12.33□□□□□ -0.44
TPM1-228ENST00000560975 TTC28Q96AY4 2481 aa12.33□□□□□ -0.44
TPM1-228ENST00000560975 TRBV10-2A0A0K0K1G8 114 aa12.32□□□□□ -0.44
TPM1-228ENST00000560975 M0QXV9 152 aa12.32□□□□□ -0.44
TPM1-228ENST00000560975 MED14OSP0DP75 135 aa12.32□□□□□ -0.44
TPM1-228ENST00000560975 Q6ZSV7 163 aa12.32□□□□□ -0.44
TPM1-228ENST00000560975 HRNRQ86YZ3 2850 aaPredicted RBP12.32□□□□□ -0.44
TPM1-228ENST00000560975 ZNF22P17026 224 aaPredicted RBP12.32□□□□□ -0.44
TPM1-228ENST00000560975 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.31□□□□□ -0.44
TPM1-228ENST00000560975 SAA4P35542 130 aa12.31□□□□□ -0.44
TPM1-228ENST00000560975 POM121L12Q8N7R1 296 aa12.31□□□□□ -0.44
TPM1-228ENST00000560975 IGHV3-11P01762 117 aa12.31□□□□□ -0.44
TPM1-228ENST00000560975 ZNF56Q15929 161 aa12.31□□□□□ -0.44
TPM1-228ENST00000560975 DUX3Q96PT4 197 aa12.31□□□□□ -0.44
TPM1-228ENST00000560975 SPXQ9BT56 116 aa12.31□□□□□ -0.44
TPM1-228ENST00000560975 LGALS9O00182 355 aa12.3□□□□□ -0.44
TPM1-228ENST00000560975 SOCS3O14543 225 aa12.3□□□□□ -0.44
TPM1-228ENST00000560975 MEIG1Q5JSS6 88 aa12.3□□□□□ -0.44
TPM1-228ENST00000560975 TRAV12-3A0A0B4J271 114 aa12.3□□□□□ -0.44
TPM1-228ENST00000560975 A0A0J9YXY3 114 aa12.3□□□□□ -0.44
TPM1-228ENST00000560975 CLEC2BQ92478 149 aa12.3□□□□□ -0.44
TPM1-228ENST00000560975 RPL13AP40429 203 aaKnown RBP12.29□□□□□ -0.44
TPM1-228ENST00000560975 UBE2E1P51965 193 aa12.29□□□□□ -0.44
TPM1-228ENST00000560975 FOXC1Q12948 553 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 126.9 ms