RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	LYPD5	Q6UWN5	251 aa		5.24	□□□□□ -1.57
SNHG1-223	ENST00000545440	COX8C	Q7Z4L0	72 aa		5.24	□□□□□ -1.57
SNHG1-223	ENST00000545440	SH2D6	Q7Z4S9	175 aa		5.24	□□□□□ -1.57
SNHG1-223	ENST00000545440	ZNF575	Q86XF7	245 aa		5.24	□□□□□ -1.57
SNHG1-223	ENST00000545440	FMC1	Q96HJ9	113 aa		5.24	□□□□□ -1.57
SNHG1-223	ENST00000545440	DNAH11	Q96DT5	4516 aa		5.24	□□□□□ -1.57
SNHG1-223	ENST00000545440	KIAA1109	Q2LD37	5005 aa		5.23	□□□□□ -1.57
SNHG1-223	ENST00000545440	TRAV34	A0A0B4J273	112 aa		5.23	□□□□□ -1.57
SNHG1-223	ENST00000545440	IGKV3D-20	A0A0C4DH25	116 aa		5.23	□□□□□ -1.57
SNHG1-223	ENST00000545440	TRBV6-1	A0A0K0K1D8	114 aa		5.23	□□□□□ -1.57
SNHG1-223	ENST00000545440	PRSS2	P07478	247 aa		5.23	□□□□□ -1.57
SNHG1-223	ENST00000545440	LINC00315	P59091	139 aa		5.23	□□□□□ -1.57
SNHG1-223	ENST00000545440	EIF5A	P63241	154 aa	Known RBP	5.23	□□□□□ -1.57
SNHG1-223	ENST00000545440	RHOH	Q15669	191 aa		5.23	□□□□□ -1.57
SNHG1-223	ENST00000545440	ZNF506	Q5JVG8	444 aa		5.23	□□□□□ -1.57
SNHG1-223	ENST00000545440	CFAP126	Q5VTH2	177 aa		5.23	□□□□□ -1.57
SNHG1-223	ENST00000545440	DPPA3	Q6W0C5	159 aa		5.23	□□□□□ -1.57
SNHG1-223	ENST00000545440	OR11H4	Q8NGC9	324 aa		5.23	□□□□□ -1.57
SNHG1-223	ENST00000545440	LINC00479	Q96M42	142 aa		5.23	□□□□□ -1.57
SNHG1-223	ENST00000545440	ZNF471	Q9BX82	626 aa	Predicted RBP	5.23	□□□□□ -1.57
SNHG1-223	ENST00000545440	IL36B	Q9NZH7	164 aa		5.23	□□□□□ -1.57
SNHG1-223	ENST00000545440	ZFP30	Q9Y2G7	519 aa		5.23	□□□□□ -1.57
SNHG1-223	ENST00000545440	HERC2	O95714	4834 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	TRBV6-4	A0A1B0GX49	114 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	FABP5P3	A8MUU1	101 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440		A8MWV9	139 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	C16orf90	A8MZG2	172 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	RS1	O15537	224 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	LTA	P01374	205 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	DNAH10OS	P0CZ25	163 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	MGST1	P10620	155 aa	Known RBP	5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	ASIP	P42127	132 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	AKR1C3	P42330	323 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	UBE2G1	P62253	170 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	DNLZ	Q5SXM8	178 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	FAM162B	Q5T6X4	162 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	CST9LP1	Q5W188	147 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440		Q6ZRN7	208 aa	Predicted RBP	5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	SLC25A29	Q8N8R3	303 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	FAM213B	Q8TBF2	198 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	MBD3L1	Q8WWY6	194 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	ZC2HC1A	Q96GY0	325 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	LY96	Q9Y6Y9	160 aa		5.22	□□□□□ -1.57
SNHG1-223	ENST00000545440	TRAV9-2	A0A087WT02	112 aa		5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440	LOC100131303	A0A0U1RQF7	123 aa		5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440		B4DEV8	164 aa		5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440		H3BVH4	76 aa		5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440	SH2D1A	O60880	128 aa		5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440	PFDN1	O60925	122 aa		5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440	TPT1	P13693	172 aa	Known RBP	5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440	S100A4	P26447	101 aa	Known RBP	5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440	AMT	P48728	403 aa		5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440	ZNF674	Q2M3X9	581 aa		5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440	ZFP2	Q6ZN57	461 aa		5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440	NFE4	Q86UQ8	179 aa		5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440	WFDC10B	Q8IUB3	73 aa		5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440	C10orf126	Q8N4M7	172 aa		5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440	NHLRC2	Q8NBF2	726 aa		5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440	SFT2D1	Q8WV19	159 aa		5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440	PRADC1	Q9BSG0	188 aa		5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440	KRTAP4-7	Q9BYR0	210 aa		5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440	PARL	Q9H300	379 aa		5.21	□□□□□ -1.58
SNHG1-223	ENST00000545440	DYNC1H1	Q14204	4646 aa	Known RBP	5.2	□□□□□ -1.58
SNHG1-223	ENST00000545440	KRBOX1	C9JBD0	128 aa		5.2	□□□□□ -1.58
SNHG1-223	ENST00000545440	CDK2AP2	O75956	126 aa		5.2	□□□□□ -1.58
SNHG1-223	ENST00000545440	S100A9	P06702	114 aa	Known RBP	5.2	□□□□□ -1.58
SNHG1-223	ENST00000545440	EVI2A	P22794	236 aa		5.2	□□□□□ -1.58
SNHG1-223	ENST00000545440	CRIP1	P50238	77 aa		5.2	□□□□□ -1.58
SNHG1-223	ENST00000545440	LGALSL	Q3ZCW2	172 aa	Predicted RBP	5.2	□□□□□ -1.58
SNHG1-223	ENST00000545440	TMUB2	Q71RG4	321 aa		5.2	□□□□□ -1.58
SNHG1-223	ENST00000545440	SPATA12	Q7Z6I5	190 aa		5.2	□□□□□ -1.58
SNHG1-223	ENST00000545440	IGHV3-73	A0A0B4J1V6	119 aa		5.19	□□□□□ -1.58
SNHG1-223	ENST00000545440	IGHV3-38	A0A0C4DH36	116 aa		5.19	□□□□□ -1.58
SNHG1-223	ENST00000545440	PRSS47	A8MTI9	375 aa		5.19	□□□□□ -1.58
SNHG1-223	ENST00000545440		M0R036	132 aa		5.19	□□□□□ -1.58
SNHG1-223	ENST00000545440	LINC00694	P0DN24	101 aa		5.19	□□□□□ -1.58
SNHG1-223	ENST00000545440	CAMP	P49913	170 aa		5.19	□□□□□ -1.58
SNHG1-223	ENST00000545440	RAB5C	P51148	216 aa		5.19	□□□□□ -1.58
SNHG1-223	ENST00000545440	ERVFC1-1	P60608	527 aa		5.19	□□□□□ -1.58
SNHG1-223	ENST00000545440	GAGE1	Q13065	139 aa		5.19	□□□□□ -1.58
SNHG1-223	ENST00000545440	GAGE4	Q13068	117 aa		5.19	□□□□□ -1.58
SNHG1-223	ENST00000545440	LINC01556	Q5JQF7	62 aa		5.19	□□□□□ -1.58
SNHG1-223	ENST00000545440	EIF5AL1	Q6IS14	154 aa	Known RBP	5.19	□□□□□ -1.58
SNHG1-223	ENST00000545440	UFSP1	Q6NVU6	142 aa		5.19	□□□□□ -1.58
SNHG1-223	ENST00000545440	TCTE3	Q8IZS6	198 aa		5.19	□□□□□ -1.58
SNHG1-223	ENST00000545440	KRTAP4-9	Q9BYQ8	210 aa		5.19	□□□□□ -1.58
SNHG1-223	ENST00000545440	SCRT2	Q9NQ03	307 aa		5.19	□□□□□ -1.58
SNHG1-223	ENST00000545440	MANBAL	Q9NQG1	85 aa		5.19	□□□□□ -1.58
SNHG1-223	ENST00000545440	TRAV1-1	A0A0B4J248	108 aa		5.18	□□□□□ -1.58
SNHG1-223	ENST00000545440	TRAV8-6	A0A0B4J262	113 aa		5.18	□□□□□ -1.58
SNHG1-223	ENST00000545440		A0A1B0GV50	99 aa		5.18	□□□□□ -1.58
SNHG1-223	ENST00000545440	IGKV2-30	P06310	120 aa		5.18	□□□□□ -1.58
SNHG1-223	ENST00000545440	CRYGD	P07320	174 aa		5.18	□□□□□ -1.58
SNHG1-223	ENST00000545440	CXCL1	P09341	107 aa		5.18	□□□□□ -1.58
SNHG1-223	ENST00000545440	ARMS2	P0C7Q2	107 aa		5.18	□□□□□ -1.58
SNHG1-223	ENST00000545440	LELP1	Q5T871	98 aa		5.18	□□□□□ -1.58
SNHG1-223	ENST00000545440	ZFP82	Q8N141	532 aa		5.18	□□□□□ -1.58
SNHG1-223	ENST00000545440	C11orf52	Q96A22	123 aa		5.18	□□□□□ -1.58
SNHG1-223	ENST00000545440	URB1-AS1	Q96HZ7	61 aa		5.18	□□□□□ -1.58
SNHG1-223	ENST00000545440	GTSF1L	Q9H1H1	148 aa		5.18	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 124 ms