RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 J3QQQ9 107 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 IGKV1-17P01599 117 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 TRACP01848 142 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 UBE2E1P51965 193 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 DLX6P56179 175 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 SEC61GP60059 68 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 LYZP61626 148 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 ERHP84090 104 aaKnown RBP2.34□□□□□ -2.03
CSDE1-216ENST00000534389 ATXN8Q156A1 80 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 DEFB133Q30KQ1 61 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 HCP5Q6MZN7 132 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 SCGB1D4Q6XE38 83 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 Q6ZT83 130 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 DEFB132Q7Z7B7 95 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 LINC00643Q86TS7 51 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 MUSTN1Q8IVN3 82 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 ZNF843Q8N446 348 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 FAM216BQ8N7L0 139 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 MDS2Q8NDY4 140 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 Q8TAT8 98 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 TMEM167AQ8TBQ9 72 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 SCGB3A1Q96QR1 104 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 LITAFQ99732 161 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 SMIM2Q9BVW6 85 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 CXXC4Q9H2H0 198 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 DPH3P1Q9H4G8 78 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 PRO0628Q9UI54 55 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 PKIGQ9Y2B9 76 aa2.34□□□□□ -2.03
CSDE1-216ENST00000534389 ASXL3Q9C0F0 2248 aa2.34□□□□□ -2.04
CSDE1-216ENST00000534389 GOLGB1Q14789 3259 aaKnown RBP2.34□□□□□ -2.04
CSDE1-216ENST00000534389 INTS1Q8N201 2190 aaKnown RBP2.33□□□□□ -2.04
CSDE1-216ENST00000534389 IGHV3OR16-10A0A075B7F0 116 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 IGKV3D-20A0A0C4DH25 116 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 RS1O15537 224 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 MRPL33O75394 65 aaKnown RBP2.33□□□□□ -2.04
CSDE1-216ENST00000534389 ATP5G1P05496 136 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 COX6A1P12074 109 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 MT3P25713 68 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 PFN2P35080 140 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 MAGEA5P43359 124 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 TMEM258P61165 79 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 TMEM30BQ3MIR4 351 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 FAM201AQ5SY85 155 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 ZNF833PQ6ZTB9 187 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 RPS19BP1Q86WX3 136 aaKnown RBP2.33□□□□□ -2.04
CSDE1-216ENST00000534389 LINC00311Q8N616 119 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 DEFB119Q8N690 84 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 PRAC1Q96KF2 57 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 KRTAP4-4Q9BYR3 166 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 LINC00574Q9H8X3 128 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 SMAD5-AS1Q9Y6J3 95 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 ARFGEF3Q5TH69 2177 aa2.33□□□□□ -2.04
CSDE1-216ENST00000534389 DNAH12Q6ZR08 3092 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 IGLV7-46A0A075B6I9 117 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 IGHV7-4-1A0A0J9YVY3 117 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 IGIPA6NJ69 53 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 FAM223BA6NKX1 122 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 I3L2K1 104 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 I3L3M4 83 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 LST1O00453 97 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 NTN3O00634 580 aaPredicted RBP2.32□□□□□ -2.04
CSDE1-216ENST00000534389 APELAP0DMC3 54 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 CXCL5P42830 114 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 RHOHQ15669 191 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 ADAMTSL4-AS1Q5T5F5 129 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 KRTAP5-1Q6L8H4 278 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 FP248Q71RG6 208 aaPredicted RBP2.32□□□□□ -2.04
CSDE1-216ENST00000534389 DYNAPQ8N1N2 210 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 LINC01561Q8N1V8 128 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 LYPD1Q8N2G4 141 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 SERP2Q8N6R1 65 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 C8orf31Q8N9H6 132 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 ZNRF1Q8ND25 227 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 RPL39LQ96EH5 51 aaKnown RBP2.32□□□□□ -2.04
CSDE1-216ENST00000534389 PRORYQ9H606 182 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 Q9H8V8 135 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 ICOSQ9Y6W8 199 aa2.32□□□□□ -2.04
CSDE1-216ENST00000534389 NAV3Q8IVL0 2385 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 A0A087WYN8 130 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 TRAV13-1A0A0B4J241 112 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 A0A0J9YXY3 114 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 FAM236DA0A1B0GTK5 79 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 PCNX2A6NKB5 2137 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 SRRM5B3KS81 715 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 LMO7DNF2Z398 122 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 K7EIM0 57 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 ATOX1O00244 68 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 LEPROTO15243 131 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 LHBP01229 141 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 IGLV3-19P01714 112 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 FAM236CP0DP71 79 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 PSMB8P28062 276 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 SUB1P53999 127 aaKnown RBP eCLIP2.31□□□□□ -2.04
CSDE1-216ENST00000534389 CCL8P80075 99 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 RPL18AQ02543 176 aaKnown RBP2.31□□□□□ -2.04
CSDE1-216ENST00000534389 CIRBPQ14011 172 aaKnown RBP2.31□□□□□ -2.04
CSDE1-216ENST00000534389 KRTAP5-11Q6L8G4 156 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 C2orf66Q6UXQ4 117 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 GPHB5Q86YW7 130 aa2.31□□□□□ -2.04
CSDE1-216ENST00000534389 FAM223AQ8IWN6 122 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms