RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	XAF1	Q6GPH4	301 aa		0.53	□□□□□ -2.32
CD44-238	ENST00000534296	DEFB123	Q8N688	67 aa		0.53	□□□□□ -2.32
CD44-238	ENST00000534296	MORN4	Q8NDC4	146 aa		0.53	□□□□□ -2.32
CD44-238	ENST00000534296	TSKU	Q8WUA8	353 aa		0.53	□□□□□ -2.32
CD44-238	ENST00000534296	BRK1	Q8WUW1	75 aa		0.53	□□□□□ -2.32
CD44-238	ENST00000534296	VPS25	Q9BRG1	176 aa		0.53	□□□□□ -2.32
CD44-238	ENST00000534296	KRTAP2-1	Q9BYU5	128 aa		0.53	□□□□□ -2.32
CD44-238	ENST00000534296	LPAR5	Q9H1C0	372 aa		0.53	□□□□□ -2.32
CD44-238	ENST00000534296	SPANXC	Q9NY87	97 aa		0.53	□□□□□ -2.32
CD44-238	ENST00000534296	NDUFAF1	Q9Y375	327 aa		0.53	□□□□□ -2.32
CD44-238	ENST00000534296	DSPP	Q9NZW4	1301 aa		0.53	□□□□□ -2.32
CD44-238	ENST00000534296	MUC12	Q9UKN1	5478 aa		0.53	□□□□□ -2.32
CD44-238	ENST00000534296	BCL9	O00512	1426 aa		0.53	□□□□□ -2.32
CD44-238	ENST00000534296	CHD7	Q9P2D1	2997 aa		0.53	□□□□□ -2.33
CD44-238	ENST00000534296	CLASP1	Q7Z460	1538 aa		0.53	□□□□□ -2.33
CD44-238	ENST00000534296	EHBP1L1	Q8N3D4	1523 aa		0.53	□□□□□ -2.33
CD44-238	ENST00000534296	CACNA1E	Q15878	2313 aa		0.53	□□□□□ -2.33
CD44-238	ENST00000534296	SPTBN1	Q01082	2364 aa	Known RBP	0.52	□□□□□ -2.33
CD44-238	ENST00000534296	IGHV1-24	A0A0C4DH33	117 aa		0.52	□□□□□ -2.33
CD44-238	ENST00000534296	TRBV7-6	A0A0J9YX20	115 aa		0.52	□□□□□ -2.33
CD44-238	ENST00000534296	HIGD1C	A8MV81	97 aa		0.52	□□□□□ -2.33
CD44-238	ENST00000534296	TPST1	O60507	370 aa		0.52	□□□□□ -2.33
CD44-238	ENST00000534296	HIST1H1B	P16401	226 aa	Known RBP	0.52	□□□□□ -2.33
CD44-238	ENST00000534296	RPL7	P18124	248 aa	Known RBP	0.52	□□□□□ -2.33
CD44-238	ENST00000534296	EVI2A	P22794	236 aa		0.52	□□□□□ -2.33
CD44-238	ENST00000534296	HRCT1	Q6UXD1	115 aa		0.52	□□□□□ -2.33
CD44-238	ENST00000534296	OR5A2	Q8NGI9	324 aa		0.52	□□□□□ -2.33
CD44-238	ENST00000534296	OR51A4	Q8NGJ6	313 aa		0.52	□□□□□ -2.33
CD44-238	ENST00000534296	PPP1R1C	Q8WVI7	109 aa		0.52	□□□□□ -2.33
CD44-238	ENST00000534296	NABP2	Q9BQ15	211 aa		0.52	□□□□□ -2.33
CD44-238	ENST00000534296	MRPL36	Q9P0J6	103 aa	Known RBP	0.52	□□□□□ -2.33
CD44-238	ENST00000534296	A2M	P01023	1474 aa		0.52	□□□□□ -2.33
CD44-238	ENST00000534296	PHLPP1	O60346	1717 aa		0.52	□□□□□ -2.33
CD44-238	ENST00000534296	HELZ	P42694	1942 aa	Known RBP	0.52	□□□□□ -2.33
CD44-238	ENST00000534296		A0A0G2JMM0	328 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296		K7EIL1	84 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296		M0QZK8	103 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	FXYD1	O00168	92 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	UQCRQ	O14949	82 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	SMIM24	O75264	130 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	DPM2	O94777	84 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	HBD	P02042	147 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	SLC25A4	P12235	298 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	RPL22	P35268	128 aa	Known RBP	0.51	□□□□□ -2.33
CD44-238	ENST00000534296	PCBD1	P61457	104 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	KIAA0100	Q14667	2235 aa	Known RBP	0.51	□□□□□ -2.33
CD44-238	ENST00000534296	RHOH	Q15669	191 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	IQCJ	Q1A5X6	159 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296		Q5XG85	94 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	MED13L	Q71F56	2210 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	DEFB132	Q7Z7B7	95 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	OR8I2	Q8N0Y5	310 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	PLAC4	Q8WY50	150 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	MAGOHB	Q96A72	148 aa	Known RBP	0.51	□□□□□ -2.33
CD44-238	ENST00000534296	CCDC115	Q96NT0	180 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	DLC1	Q96QB1	1528 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	ATG5	Q9H1Y0	275 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	C10orf95	Q9H7T3	257 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	MRPL35	Q9NZE8	188 aa	Known RBP	0.51	□□□□□ -2.33
CD44-238	ENST00000534296	CC2D2A	Q9P2K1	1620 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	MRC2	Q9UBG0	1479 aa		0.51	□□□□□ -2.33
CD44-238	ENST00000534296	ABCA1	O95477	2261 aa		0.5	□□□□□ -2.33
CD44-238	ENST00000534296	ESPL1	Q14674	2120 aa		0.5	□□□□□ -2.33
CD44-238	ENST00000534296	FGD6	Q6ZV73	1430 aa		0.5	□□□□□ -2.33
CD44-238	ENST00000534296	LOC107984640	A0A0U1RRK4	108 aa		0.5	□□□□□ -2.33
CD44-238	ENST00000534296		A6NN06	94 aa		0.5	□□□□□ -2.33
CD44-238	ENST00000534296	IL7	P13232	177 aa		0.5	□□□□□ -2.33
CD44-238	ENST00000534296	POLR2J	P52435	117 aa	Known RBP	0.5	□□□□□ -2.33
CD44-238	ENST00000534296	DMAC1	Q96GE9	116 aa		0.5	□□□□□ -2.33
CD44-238	ENST00000534296	CBLN4	Q9NTU7	201 aa		0.5	□□□□□ -2.33
CD44-238	ENST00000534296	PLAC8	Q9NZF1	115 aa		0.5	□□□□□ -2.33
CD44-238	ENST00000534296	FRAS1	Q86XX4	4008 aa		0.5	□□□□□ -2.33
CD44-238	ENST00000534296	MYH13	Q9UKX3	1938 aa		0.5	□□□□□ -2.33
CD44-238	ENST00000534296	CFAP43	Q8NDM7	1665 aa		0.49	□□□□□ -2.33
CD44-238	ENST00000534296	NWD1	Q149M9	1564 aa		0.49	□□□□□ -2.33
CD44-238	ENST00000534296	MYCBP2	O75592	4640 aa		0.49	□□□□□ -2.33
CD44-238	ENST00000534296	SPAG17	Q6Q759	2223 aa		0.49	□□□□□ -2.33
CD44-238	ENST00000534296	GNG14	A0A1W2PPG7	69 aa		0.49	□□□□□ -2.33
CD44-238	ENST00000534296		H0YJX3	145 aa		0.49	□□□□□ -2.33
CD44-238	ENST00000534296		J3KT08	172 aa		0.49	□□□□□ -2.33
CD44-238	ENST00000534296	CDC42EP2	O14613	210 aa		0.49	□□□□□ -2.33
CD44-238	ENST00000534296	PAEP	P09466	180 aa		0.49	□□□□□ -2.33
CD44-238	ENST00000534296	CMPK1	P30085	196 aa		0.49	□□□□□ -2.33
CD44-238	ENST00000534296	HSD17B12	Q53GQ0	312 aa		0.49	□□□□□ -2.33
CD44-238	ENST00000534296	CSAG1	Q6PB30	78 aa		0.49	□□□□□ -2.33
CD44-238	ENST00000534296	C10orf99	Q6UWK7	81 aa		0.49	□□□□□ -2.33
CD44-238	ENST00000534296	NAT14	Q8WUY8	206 aa		0.49	□□□□□ -2.33
CD44-238	ENST00000534296	CDK5RAP2	Q96SN8	1893 aa		0.49	□□□□□ -2.33
CD44-238	ENST00000534296	MAP2	P11137	1827 aa	Known RBP	0.49	□□□□□ -2.33
CD44-238	ENST00000534296	BIVM-ERCC5	R4GMW8	1640 aa		0.49	□□□□□ -2.33
CD44-238	ENST00000534296	SLIT1	O75093	1534 aa		0.48	□□□□□ -2.33
CD44-238	ENST00000534296	MYH6	P13533	1939 aa		0.48	□□□□□ -2.33
CD44-238	ENST00000534296	ACACA	Q13085	2346 aa		0.48	□□□□□ -2.33
CD44-238	ENST00000534296	BORCS7-ASMT	A0A0B4J1R7	106 aa		0.48	□□□□□ -2.33
CD44-238	ENST00000534296		A0A0D9SG42	100 aa		0.48	□□□□□ -2.33
CD44-238	ENST00000534296	IGF2	P01344	180 aa		0.48	□□□□□ -2.33
CD44-238	ENST00000534296	ASB16-AS1	Q495Z4	193 aa		0.48	□□□□□ -2.33
CD44-238	ENST00000534296	LYPD5	Q6UWN5	251 aa		0.48	□□□□□ -2.33
CD44-238	ENST00000534296	TAC4	Q86UU9	113 aa		0.48	□□□□□ -2.33
CD44-238	ENST00000534296	AIF1L	Q9BQI0	150 aa		0.48	□□□□□ -2.33

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