RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 NDUFA5Q16718 116 aa20.76■□□□□ 0.91
LIMCH1-211ENST00000509638 UFSP1Q6NVU6 142 aa20.76■□□□□ 0.91
LIMCH1-211ENST00000509638 ZFP2Q6ZN57 461 aa20.76■□□□□ 0.91
LIMCH1-211ENST00000509638 ANAPC16Q96DE5 110 aa20.76■□□□□ 0.91
LIMCH1-211ENST00000509638 NAT8BQ9UHF3 227 aa20.76■□□□□ 0.91
LIMCH1-211ENST00000509638 CIDEAO60543 219 aa20.75■□□□□ 0.91
LIMCH1-211ENST00000509638 WDR73Q6P4I2 378 aa20.75■□□□□ 0.91
LIMCH1-211ENST00000509638 NUP35Q8NFH5 326 aa20.75■□□□□ 0.91
LIMCH1-211ENST00000509638 BORCS7Q96B45 105 aa20.75■□□□□ 0.91
LIMCH1-211ENST00000509638 PRO0255Q9UI72 69 aa20.75■□□□□ 0.91
LIMCH1-211ENST00000509638 HHLA3Q9XRX5 114 aa20.75■□□□□ 0.91
LIMCH1-211ENST00000509638 CRYGDP07320 174 aa20.74■□□□□ 0.91
LIMCH1-211ENST00000509638 TWIST1Q15672 202 aa20.74■□□□□ 0.91
LIMCH1-211ENST00000509638 LYSTQ99698 3801 aa20.73■□□□□ 0.91
LIMCH1-211ENST00000509638 GATA1P15976 413 aaPredicted RBP20.73■□□□□ 0.91
LIMCH1-211ENST00000509638 C14orf178Q8N769 122 aaPredicted RBP20.73■□□□□ 0.91
LIMCH1-211ENST00000509638 APOC3P02656 99 aa20.72■□□□□ 0.91
LIMCH1-211ENST00000509638 CRYBA4P53673 196 aa20.72■□□□□ 0.91
LIMCH1-211ENST00000509638 SLAQ13239 276 aa20.72■□□□□ 0.91
LIMCH1-211ENST00000509638 VSIG2Q96IQ7 327 aa20.72■□□□□ 0.91
LIMCH1-211ENST00000509638 A0A1B0GUT8 65 aa20.72■□□□□ 0.91
LIMCH1-211ENST00000509638 TRGC1P0CF51 173 aa20.72■□□□□ 0.91
LIMCH1-211ENST00000509638 PAX4O43316 350 aa20.71■□□□□ 0.91
LIMCH1-211ENST00000509638 SMIM17P0DL12 118 aa20.71■□□□□ 0.91
LIMCH1-211ENST00000509638 CLRN3Q8NCR9 226 aa20.7■□□□□ 0.9
LIMCH1-211ENST00000509638 EVI2AP22794 236 aa20.69■□□□□ 0.9
LIMCH1-211ENST00000509638 Q6ZSN1 163 aa20.69■□□□□ 0.9
LIMCH1-211ENST00000509638 APLNQ9ULZ1 77 aa20.69■□□□□ 0.9
LIMCH1-211ENST00000509638 TCTAP57738 103 aa20.68■□□□□ 0.9
LIMCH1-211ENST00000509638 ZNF56Q15929 161 aa20.68■□□□□ 0.9
LIMCH1-211ENST00000509638 SLC25A29Q8N8R3 303 aa20.68■□□□□ 0.9
LIMCH1-211ENST00000509638 C15orf53Q8NAA6 179 aa20.68■□□□□ 0.9
LIMCH1-211ENST00000509638 KIF25-AS1Q9Y6Z4 181 aa20.68■□□□□ 0.9
LIMCH1-211ENST00000509638 H3BNG1 76 aa20.68■□□□□ 0.9
LIMCH1-211ENST00000509638 RHEBQ15382 184 aa20.68■□□□□ 0.9
LIMCH1-211ENST00000509638 NUDT3O95989 172 aa20.67■□□□□ 0.9
LIMCH1-211ENST00000509638 SVBPQ8N300 66 aa20.67■□□□□ 0.9
LIMCH1-211ENST00000509638 CTDSP1Q9GZU7 261 aa20.67■□□□□ 0.9
LIMCH1-211ENST00000509638 TRBV6-4A0A1B0GX49 114 aa20.66■□□□□ 0.9
LIMCH1-211ENST00000509638 C7orf77A4D0Y5 90 aa20.66■□□□□ 0.9
LIMCH1-211ENST00000509638 MGPP08493 103 aa20.65■□□□□ 0.9
LIMCH1-211ENST00000509638 RHOHQ15669 191 aa20.65■□□□□ 0.9
LIMCH1-211ENST00000509638 K7EQD1 137 aa20.64■□□□□ 0.9
LIMCH1-211ENST00000509638 RIGQ13278 110 aa20.64■□□□□ 0.9
LIMCH1-211ENST00000509638 DPH3P1Q9H4G8 78 aa20.64■□□□□ 0.9
LIMCH1-211ENST00000509638 LOC100131303A0A0U1RQF7 123 aa20.63■□□□□ 0.89
LIMCH1-211ENST00000509638 GYPEP15421 78 aa20.63■□□□□ 0.89
LIMCH1-211ENST00000509638 FAM3BP58499 235 aaPredicted RBP20.63■□□□□ 0.89
LIMCH1-211ENST00000509638 LINC00315P59091 139 aa20.63■□□□□ 0.89
LIMCH1-211ENST00000509638 SMIM15Q7Z3B0 74 aa20.63■□□□□ 0.89
LIMCH1-211ENST00000509638 SNAPINO95295 136 aa20.63■□□□□ 0.89
LIMCH1-211ENST00000509638 PRADC1Q9BSG0 188 aa20.63■□□□□ 0.89
LIMCH1-211ENST00000509638 RPS10P5Q9NQ39 176 aa20.63■□□□□ 0.89
LIMCH1-211ENST00000509638 F5H697 171 aa20.62■□□□□ 0.89
LIMCH1-211ENST00000509638 RAB4BP61018 213 aa20.62■□□□□ 0.89
LIMCH1-211ENST00000509638 MRPL54Q6P161 138 aaKnown RBP20.62■□□□□ 0.89
LIMCH1-211ENST00000509638 ICOSQ9Y6W8 199 aa20.62■□□□□ 0.89
LIMCH1-211ENST00000509638 A0A087WWC5 75 aa20.61■□□□□ 0.89
LIMCH1-211ENST00000509638 A0A096LPF7 62 aa20.6■□□□□ 0.89
LIMCH1-211ENST00000509638 IMMP2LQ96T52 175 aa20.59■□□□□ 0.89
LIMCH1-211ENST00000509638 TMEM242Q9NWH2 141 aa20.59■□□□□ 0.89
LIMCH1-211ENST00000509638 P0DMU3 169 aa20.58■□□□□ 0.88
LIMCH1-211ENST00000509638 FAM231AP0DMU4 169 aa20.58■□□□□ 0.88
LIMCH1-211ENST00000509638 FAM231CP0DMU5 169 aa20.58■□□□□ 0.88
LIMCH1-211ENST00000509638 CAMPP49913 170 aa20.58■□□□□ 0.88
LIMCH1-211ENST00000509638 Q9UF83 564 aa20.58■□□□□ 0.88
LIMCH1-211ENST00000509638 SRIP30626 198 aa20.57■□□□□ 0.88
LIMCH1-211ENST00000509638 HBBP68871 147 aa20.57■□□□□ 0.88
LIMCH1-211ENST00000509638 MRPL23Q16540 153 aaKnown RBP20.57■□□□□ 0.88
LIMCH1-211ENST00000509638 SUMO4Q6EEV6 95 aa20.57■□□□□ 0.88
LIMCH1-211ENST00000509638 KCNIP4Q6PIL6 250 aa20.57■□□□□ 0.88
LIMCH1-211ENST00000509638 TMEM191AQ9H0A3 160 aa20.57■□□□□ 0.88
LIMCH1-211ENST00000509638 A0A1B0GW15 77 aa20.56■□□□□ 0.88
LIMCH1-211ENST00000509638 A0A1B0GXF2 115 aa20.56■□□□□ 0.88
LIMCH1-211ENST00000509638 ATP5L2Q7Z4Y8 100 aa20.56■□□□□ 0.88
LIMCH1-211ENST00000509638 ALMS1Q8TCU4 4167 aa20.55■□□□□ 0.88
LIMCH1-211ENST00000509638 TRBV10-1A0A0K0K1A3 114 aa20.54■□□□□ 0.88
LIMCH1-211ENST00000509638 BTF3L4Q96K17 158 aa20.54■□□□□ 0.88
LIMCH1-211ENST00000509638 URGCP-MRPS24S4R325 110 aa20.54■□□□□ 0.88
LIMCH1-211ENST00000509638 GAGE12JA6NER3 117 aa20.53■□□□□ 0.88
LIMCH1-211ENST00000509638 S100PP25815 95 aa20.53■□□□□ 0.88
LIMCH1-211ENST00000509638 GAGE1Q13065 139 aa20.53■□□□□ 0.88
LIMCH1-211ENST00000509638 GAGE4Q13068 117 aa20.53■□□□□ 0.88
LIMCH1-211ENST00000509638 GAGE5Q13069 117 aa20.53■□□□□ 0.88
LIMCH1-211ENST00000509638 GAGE13Q4V321 117 aa20.53■□□□□ 0.88
LIMCH1-211ENST00000509638 S100A8P05109 93 aa20.52■□□□□ 0.88
LIMCH1-211ENST00000509638 AMN1Q8IY45 258 aa20.52■□□□□ 0.88
LIMCH1-211ENST00000509638 TRAV26-2A0A0B4J265 109 aa20.51■□□□□ 0.87
LIMCH1-211ENST00000509638 M0QY20 66 aa20.51■□□□□ 0.87
LIMCH1-211ENST00000509638 LINC00694P0DN24 101 aa20.51■□□□□ 0.87
LIMCH1-211ENST00000509638 NEGR1Q7Z3B1 354 aa20.51■□□□□ 0.87
LIMCH1-211ENST00000509638 H7C1H1 209 aa20.51■□□□□ 0.87
LIMCH1-211ENST00000509638 ATRAIDQ6UW56 229 aa20.51■□□□□ 0.87
LIMCH1-211ENST00000509638 LINC00476Q8WZB0 136 aa20.51■□□□□ 0.87
LIMCH1-211ENST00000509638 NEXN-AS1Q8NBZ9 246 aa20.5■□□□□ 0.87
LIMCH1-211ENST00000509638 RPL36AP83881 106 aaKnown RBP20.49■□□□□ 0.87
LIMCH1-211ENST00000509638 RPL36ALQ969Q0 106 aaKnown RBP20.49■□□□□ 0.87
LIMCH1-211ENST00000509638 RNF185Q96GF1 192 aa20.49■□□□□ 0.87
LIMCH1-211ENST00000509638 KMT2CQ8NEZ4 4911 aaKnown RBP20.49■□□□□ 0.87
LIMCH1-211ENST00000509638 TRAV9-1A0A075B6T8 112 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms