RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 CCL25O15444 150 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 NFAT5O94916 1531 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 IFNA17P01571 189 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 PRH1P02810 166 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 GYPBP06028 91 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 CD14P08571 375 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 AKAIN1P0CW23 69 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 HIST1H1BP16401 226 aaKnown RBP0.51□□□□□ -2.33
VPS50-219ENST00000495039 CRYGSP22914 178 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 S100A1P23297 94 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 SNCAP37840 140 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 RBP2P50120 134 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 CAV3P56539 151 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 FXYD6P3P58550 94 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 SNRPGP62308 76 aaKnown RBP0.51□□□□□ -2.33
VPS50-219ENST00000495039 MRPS10P82664 201 aaKnown RBP0.51□□□□□ -2.33
VPS50-219ENST00000495039 CLTCQ00610 1675 aaKnown RBP0.51□□□□□ -2.33
VPS50-219ENST00000495039 PSG9Q00887 426 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 SHROOM2Q13796 1616 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 PLGLAQ15195 96 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 OR8B8Q15620 311 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 CCDC58Q4VC31 144 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 SPRNQ5BIV9 151 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 BCORL1Q5H9F3 1711 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 GLYATL3Q5SZD4 288 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 HAGHLQ6PII5 290 aaPredicted RBP0.51□□□□□ -2.33
VPS50-219ENST00000495039 LINC00322Q6ZN03 302 aaPredicted RBP0.51□□□□□ -2.33
VPS50-219ENST00000495039 PREX2Q70Z35 1606 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 KRTAP19-3Q7Z4W3 81 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 PBRM1Q86U86 1689 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 SNX29P2Q8IUI4 249 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 GCC2Q8IWJ2 1684 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 TCTE3Q8IZS6 198 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 ADGBQ8N7X0 1667 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 C5orf17Q8NAS9 161 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 DEFB108BQ8NET1 73 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 OR5A2Q8NGI9 324 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 BRK1Q8WUW1 75 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 MAFIPQ8WZ33 124 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 CTTNBP2Q8WZ74 1663 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 CLEC2BQ92478 149 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 PSMF1Q92530 271 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 TSLPQ969D9 159 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 DIRC1Q969H9 104 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 LRRIQ1Q96JM4 1722 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 CIB3Q96Q77 187 aaPredicted RBP0.51□□□□□ -2.33
VPS50-219ENST00000495039 SMIM7Q9BQ49 75 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 TTTY10Q9BZA0 68 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 CMC2Q9NRP2 79 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 CBLN4Q9NTU7 201 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 COPZ2Q9P299 210 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.51□□□□□ -2.33
VPS50-219ENST00000495039 KIDINS220Q9ULH0 1771 aa0.51□□□□□ -2.33
VPS50-219ENST00000495039 NOP16Q9Y3C1 178 aaKnown RBP0.51□□□□□ -2.33
VPS50-219ENST00000495039 SNRNP200O75643 2136 aaKnown RBP0.5□□□□□ -2.33
VPS50-219ENST00000495039 XRN1Q8IZH2 1706 aaKnown RBP0.5□□□□□ -2.33
VPS50-219ENST00000495039 MYO5CQ9NQX4 1742 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 PPRC1Q5VV67 1664 aaKnown RBP0.5□□□□□ -2.33
VPS50-219ENST00000495039 RIMS1Q86UR5 1692 aaKnown RBP0.5□□□□□ -2.33
VPS50-219ENST00000495039 LRP6O75581 1613 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 ABCA6Q8N139 1617 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 CICQ96RK0 1608 aaPredicted RBP0.5□□□□□ -2.33
VPS50-219ENST00000495039 FXYD6-FXYD2A0A087WZ82 144 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 TRAV1-2A0A0B4J238 106 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 LOC107984156A0A0G2JMH3 177 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 A0A1W2PPM0 123 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 C9orf170A2RU37 121 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 CRYM-AS1A6NIL9 109 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 IFITM5A6NNB3 132 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 CEBPZOSA8MTT3 80 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 DEFB108AA8MXU0 73 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 C9JAW5 83 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 F6UZH7 168 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 JMJD7-PLA2G4BH0Y9G9 81 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 J3QR89 54 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 M0QZK8 103 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 M0R135 149 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 CDC42EP2O14613 210 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 NDUFA2O43678 99 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 YPEL1O60688 119 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 OR2H2O95918 312 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 PPYP01298 95 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 IGF2P01344 180 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 IGLV1-51P01701 117 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 HBDP02042 147 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 CD3DP04234 171 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 SCTP09683 121 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 IFI6P09912 130 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 PIPP12273 146 aaPredicted RBP0.5□□□□□ -2.33
VPS50-219ENST00000495039 IL7P13232 177 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 S100PP25815 95 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 CKS2P33552 79 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 FOXA3P55318 350 aaPredicted RBP0.5□□□□□ -2.33
VPS50-219ENST00000495039 EDDM3BP56851 147 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 FXYD4P59646 89 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 S100A10P60903 97 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 RRAS2P62070 204 aaPredicted RBP0.5□□□□□ -2.33
VPS50-219ENST00000495039 NCS1P62166 190 aa0.5□□□□□ -2.33
VPS50-219ENST00000495039 RPS25P62851 125 aaKnown RBP0.5□□□□□ -2.33
VPS50-219ENST00000495039 BLCAPP62952 87 aa0.5□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms