RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 KLK12Q9UKR0 248 aa9.04□□□□□ -0.96
SQSTM1-208ENST00000485412 COX11Q9Y6N1 276 aa9.04□□□□□ -0.96
SQSTM1-208ENST00000485412 IGKV2D-24A0A075B6R9 120 aa9.03□□□□□ -0.96
SQSTM1-208ENST00000485412 K7EQM0 130 aa9.03□□□□□ -0.96
SQSTM1-208ENST00000485412 S100A4P26447 101 aaKnown RBP9.03□□□□□ -0.96
SQSTM1-208ENST00000485412 ASIPP42127 132 aa9.03□□□□□ -0.96
SQSTM1-208ENST00000485412 Q86TA4 180 aa9.03□□□□□ -0.96
SQSTM1-208ENST00000485412 Q8N976 141 aa9.03□□□□□ -0.96
SQSTM1-208ENST00000485412 CIRBP-AS1Q8TBR5 109 aa9.03□□□□□ -0.96
SQSTM1-208ENST00000485412 RMI2Q96E14 147 aa9.03□□□□□ -0.96
SQSTM1-208ENST00000485412 PSMG3Q9BT73 122 aaPredicted RBP9.03□□□□□ -0.96
SQSTM1-208ENST00000485412 A0A087WWL8 130 aa9.02□□□□□ -0.97
SQSTM1-208ENST00000485412 GRIFINA4D1Z8 144 aa9.02□□□□□ -0.97
SQSTM1-208ENST00000485412 M0R036 132 aa9.02□□□□□ -0.97
SQSTM1-208ENST00000485412 IGLV2-8P01709 118 aa9.02□□□□□ -0.97
SQSTM1-208ENST00000485412 UBE2G2P60604 165 aa9.02□□□□□ -0.97
SQSTM1-208ENST00000485412 FAM74A4Q5TZK3 123 aa9.02□□□□□ -0.97
SQSTM1-208ENST00000485412 ZC2HC1AQ96GY0 325 aa9.02□□□□□ -0.97
SQSTM1-208ENST00000485412 TMEM167BQ9NRX6 74 aa9.02□□□□□ -0.97
SQSTM1-208ENST00000485412 IL36BQ9NZH7 164 aa9.02□□□□□ -0.97
SQSTM1-208ENST00000485412 RNF222A6NCQ9 220 aa9.01□□□□□ -0.97
SQSTM1-208ENST00000485412 B4DEV8 164 aa9.01□□□□□ -0.97
SQSTM1-208ENST00000485412 KRBOX1C9JBD0 128 aa9.01□□□□□ -0.97
SQSTM1-208ENST00000485412 CXorf1O96002 111 aa9.01□□□□□ -0.97
SQSTM1-208ENST00000485412 ARMS2P0C7Q2 107 aa9.01□□□□□ -0.97
SQSTM1-208ENST00000485412 ZNF345Q14585 488 aa9.01□□□□□ -0.97
SQSTM1-208ENST00000485412 SAPCD1Q5SSQ6 148 aa9.01□□□□□ -0.97
SQSTM1-208ENST00000485412 UBE2WQ96B02 151 aa9.01□□□□□ -0.97
SQSTM1-208ENST00000485412 AQP10Q96PS8 301 aa9.01□□□□□ -0.97
SQSTM1-208ENST00000485412 TNFSF18Q9UNG2 199 aa9.01□□□□□ -0.97
SQSTM1-208ENST00000485412 A0A0D9SG52 128 aa9□□□□□ -0.97
SQSTM1-208ENST00000485412 FABP5P3A8MUU1 101 aa9□□□□□ -0.97
SQSTM1-208ENST00000485412 SH2D1AO60880 128 aa9□□□□□ -0.97
SQSTM1-208ENST00000485412 RPL37AP61513 92 aaKnown RBP9□□□□□ -0.97
SQSTM1-208ENST00000485412 PIK3CD-AS1Q5SR53 167 aa9□□□□□ -0.97
SQSTM1-208ENST00000485412 ACTR3CQ9C0K3 210 aaPredicted RBP9□□□□□ -0.97
SQSTM1-208ENST00000485412 A0A087WWC5 75 aa8.99□□□□□ -0.97
SQSTM1-208ENST00000485412 FXYD6-FXYD2A0A087WZ82 144 aa8.99□□□□□ -0.97
SQSTM1-208ENST00000485412 TMSB15BA0A087X1C1 80 aa8.99□□□□□ -0.97
SQSTM1-208ENST00000485412 A0A1W2PRE2 83 aa8.99□□□□□ -0.97
SQSTM1-208ENST00000485412 PEX7O00628 323 aa8.99□□□□□ -0.97
SQSTM1-208ENST00000485412 ARPC5O15511 151 aa8.99□□□□□ -0.97
SQSTM1-208ENST00000485412 IFNA7P01567 189 aa8.99□□□□□ -0.97
SQSTM1-208ENST00000485412 HNRNPA3P51991 378 aaKnown RBP8.99□□□□□ -0.97
SQSTM1-208ENST00000485412 FGF8P55075 233 aaPredicted RBP8.99□□□□□ -0.97
SQSTM1-208ENST00000485412 RPL7L1Q6DKI1 246 aaKnown RBP8.99□□□□□ -0.97
SQSTM1-208ENST00000485412 KCNRGQ8N5I3 272 aa8.99□□□□□ -0.97
SQSTM1-208ENST00000485412 INO80EQ8NBZ0 244 aaPredicted RBP8.99□□□□□ -0.97
SQSTM1-208ENST00000485412 URGCP-MRPS24S4R325 110 aa8.99□□□□□ -0.97
SQSTM1-208ENST00000485412 FAM74A7A6NL05 159 aa8.98□□□□□ -0.97
SQSTM1-208ENST00000485412 M0R381 172 aa8.98□□□□□ -0.97
SQSTM1-208ENST00000485412 SEC11BP0C7V7 166 aa8.98□□□□□ -0.97
SQSTM1-208ENST00000485412 SERF2P84101 59 aa8.98□□□□□ -0.97
SQSTM1-208ENST00000485412 DNLZQ5SXM8 178 aa8.98□□□□□ -0.97
SQSTM1-208ENST00000485412 TMUB2Q71RG4 321 aa8.98□□□□□ -0.97
SQSTM1-208ENST00000485412 RHODO00212 210 aa8.97□□□□□ -0.97
SQSTM1-208ENST00000485412 MBP02144 154 aa8.97□□□□□ -0.97
SQSTM1-208ENST00000485412 ATRAIDQ6UW56 229 aa8.97□□□□□ -0.97
SQSTM1-208ENST00000485412 SFRP2Q96HF1 295 aa8.97□□□□□ -0.97
SQSTM1-208ENST00000485412 UBE2D3P61077 147 aa8.96□□□□□ -0.98
SQSTM1-208ENST00000485412 UBE2D2P62837 147 aa8.96□□□□□ -0.98
SQSTM1-208ENST00000485412 ENHOQ6UWT2 76 aa8.96□□□□□ -0.98
SQSTM1-208ENST00000485412 A0A087WX48 190 aa8.95□□□□□ -0.98
SQSTM1-208ENST00000485412 CTXND1A0A1B0GTU2 59 aa8.95□□□□□ -0.98
SQSTM1-208ENST00000485412 C14orf177Q52M58 125 aa8.95□□□□□ -0.98
SQSTM1-208ENST00000485412 MPV17L2Q567V2 206 aa8.95□□□□□ -0.98
SQSTM1-208ENST00000485412 PHLDA3Q9Y5J5 127 aa8.95□□□□□ -0.98
SQSTM1-208ENST00000485412 TNXBP22105 4242 aa8.95□□□□□ -0.98
SQSTM1-208ENST00000485412 BCL2L11O43521 198 aa8.94□□□□□ -0.98
SQSTM1-208ENST00000485412 RPL19P84098 196 aaKnown RBP8.94□□□□□ -0.98
SQSTM1-208ENST00000485412 ZNF674Q2M3X9 581 aa8.94□□□□□ -0.98
SQSTM1-208ENST00000485412 FAM162BQ5T6X4 162 aa8.94□□□□□ -0.98
SQSTM1-208ENST00000485412 TEX261Q6UWH6 196 aa8.94□□□□□ -0.98
SQSTM1-208ENST00000485412 COX8CQ7Z4L0 72 aa8.94□□□□□ -0.98
SQSTM1-208ENST00000485412 SLC51BQ86UW2 128 aa8.94□□□□□ -0.98
SQSTM1-208ENST00000485412 C15orf54Q8N8G6 183 aa8.94□□□□□ -0.98
SQSTM1-208ENST00000485412 DAZAP1Q96EP5 407 aaKnown RBP8.94□□□□□ -0.98
SQSTM1-208ENST00000485412 TRBV7-3A0A075B6L6 115 aa8.93□□□□□ -0.98
SQSTM1-208ENST00000485412 KANTRA0A1W2PQU2 76 aa8.93□□□□□ -0.98
SQSTM1-208ENST00000485412 PANO1I0J062 215 aa8.93□□□□□ -0.98
SQSTM1-208ENST00000485412 TPT1P13693 172 aaKnown RBP8.93□□□□□ -0.98
SQSTM1-208ENST00000485412 LINC01559Q495D7 138 aa8.93□□□□□ -0.98
SQSTM1-208ENST00000485412 KCNIP4Q6PIL6 250 aa8.93□□□□□ -0.98
SQSTM1-208ENST00000485412 HIST1H2BAQ96A08 127 aa8.93□□□□□ -0.98
SQSTM1-208ENST00000485412 TRBV6-8A0A0A6YYG3 113 aa8.92□□□□□ -0.98
SQSTM1-208ENST00000485412 MUC21A0A0G2JKD1 596 aa8.92□□□□□ -0.98
SQSTM1-208ENST00000485412 TRBV10-1A0A0K0K1A3 114 aa8.92□□□□□ -0.98
SQSTM1-208ENST00000485412 MUC21A0A140T8X8 626 aa8.92□□□□□ -0.98
SQSTM1-208ENST00000485412 USP17L23D6RBM5 183 aa8.92□□□□□ -0.98
SQSTM1-208ENST00000485412 TMEM262E9PQX1 116 aa8.92□□□□□ -0.98
SQSTM1-208ENST00000485412 RPL36AP83881 106 aaKnown RBP8.92□□□□□ -0.98
SQSTM1-208ENST00000485412 ELOBQ15370 118 aa8.92□□□□□ -0.98
SQSTM1-208ENST00000485412 CLPSL2Q6UWE3 100 aa8.92□□□□□ -0.98
SQSTM1-208ENST00000485412 NEXN-AS1Q8NBZ9 246 aa8.92□□□□□ -0.98
SQSTM1-208ENST00000485412 OR10AG1Q8NH19 301 aa8.92□□□□□ -0.98
SQSTM1-208ENST00000485412 RPL36ALQ969Q0 106 aaKnown RBP8.92□□□□□ -0.98
SQSTM1-208ENST00000485412 CHCHD7Q9BUK0 85 aa8.92□□□□□ -0.98
SQSTM1-208ENST00000485412 C1orf43Q9BWL3 253 aa8.92□□□□□ -0.98
SQSTM1-208ENST00000485412 CYTL1Q9NRR1 136 aa8.92□□□□□ -0.98
SQSTM1-208ENST00000485412 MAP1LC3B2A6NCE7 125 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms