RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 A0A087WX48 190 aa11.08□□□□□ -0.64
VIM-204ENST00000478746 RAB2AP61019 212 aa11.08□□□□□ -0.64
VIM-204ENST00000478746 GNG5P63218 68 aa11.08□□□□□ -0.64
VIM-204ENST00000478746 AKR1C8PQ5T2L2 129 aa11.08□□□□□ -0.64
VIM-204ENST00000478746 OR10G9Q8NGN4 311 aa11.08□□□□□ -0.64
VIM-204ENST00000478746 OR10G7Q8NGN6 311 aa11.08□□□□□ -0.64
VIM-204ENST00000478746 A0A1W2PPV4 95 aa11.07□□□□□ -0.64
VIM-204ENST00000478746 A8MWV9 139 aa11.07□□□□□ -0.64
VIM-204ENST00000478746 RNASE3P12724 160 aaKnown RBP11.07□□□□□ -0.64
VIM-204ENST00000478746 ZNF80P51504 273 aaPredicted RBP11.07□□□□□ -0.64
VIM-204ENST00000478746 Q0VG73 95 aa11.07□□□□□ -0.64
VIM-204ENST00000478746 EIF5AL1Q6IS14 154 aaKnown RBP11.07□□□□□ -0.64
VIM-204ENST00000478746 ATRAIDQ6UW56 229 aa11.07□□□□□ -0.64
VIM-204ENST00000478746 SGK494Q96LW2 274 aa11.07□□□□□ -0.64
VIM-204ENST00000478746 LINC00479Q96M42 142 aa11.07□□□□□ -0.64
VIM-204ENST00000478746 KCNIP4Q6PIL6 250 aa11.06□□□□□ -0.64
VIM-204ENST00000478746 C14orf178Q8N769 122 aaPredicted RBP11.06□□□□□ -0.64
VIM-204ENST00000478746 TMEM75Q8N9X5 138 aa11.06□□□□□ -0.64
VIM-204ENST00000478746 SERTM2A0A1B0GWG4 89 aa11.05□□□□□ -0.64
VIM-204ENST00000478746 GCGP01275 180 aa11.05□□□□□ -0.64
VIM-204ENST00000478746 ASIPP42127 132 aa11.05□□□□□ -0.64
VIM-204ENST00000478746 CDC34P49427 236 aaPredicted RBP11.05□□□□□ -0.64
VIM-204ENST00000478746 CHCHD7Q9BUK0 85 aa11.05□□□□□ -0.64
VIM-204ENST00000478746 C1orf43Q9BWL3 253 aa11.05□□□□□ -0.64
VIM-204ENST00000478746 ACTR3CQ9C0K3 210 aaPredicted RBP11.05□□□□□ -0.64
VIM-204ENST00000478746 UMAD1C9J7I0 102 aa11.04□□□□□ -0.64
VIM-204ENST00000478746 PIK3CD-AS1Q5SR53 167 aa11.04□□□□□ -0.64
VIM-204ENST00000478746 DMRTA1Q5VZB9 504 aa11.04□□□□□ -0.64
VIM-204ENST00000478746 K7EQM0 130 aa11.03□□□□□ -0.64
VIM-204ENST00000478746 HMGB3O15347 200 aaKnown RBP11.03□□□□□ -0.64
VIM-204ENST00000478746 DGAT2L7PQ6IED9 249 aa11.03□□□□□ -0.64
VIM-204ENST00000478746 JPT2Q9H910 190 aa11.03□□□□□ -0.64
VIM-204ENST00000478746 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.03□□□□□ -0.64
VIM-204ENST00000478746 USP17L23D6RBM5 183 aa11.02□□□□□ -0.65
VIM-204ENST00000478746 TCRAP04437 139 aa11.02□□□□□ -0.65
VIM-204ENST00000478746 S100A4P26447 101 aaKnown RBP11.02□□□□□ -0.65
VIM-204ENST00000478746 SMUG1Q53HV7 270 aa11.02□□□□□ -0.65
VIM-204ENST00000478746 UFSP1Q6NVU6 142 aa11.02□□□□□ -0.65
VIM-204ENST00000478746 C9orf163Q8N9P6 203 aa11.02□□□□□ -0.65
VIM-204ENST00000478746 C5orf17Q8NAS9 161 aa11.02□□□□□ -0.65
VIM-204ENST00000478746 RAB24Q969Q5 203 aa11.02□□□□□ -0.65
VIM-204ENST00000478746 ZC2HC1AQ96GY0 325 aa11.02□□□□□ -0.65
VIM-204ENST00000478746 PSG8Q9UQ74 426 aa11.02□□□□□ -0.65
VIM-204ENST00000478746 CTXND1A0A1B0GTU2 59 aa11.01□□□□□ -0.65
VIM-204ENST00000478746 TMEM262E9PQX1 116 aa11.01□□□□□ -0.65
VIM-204ENST00000478746 PRSS1P07477 247 aa11.01□□□□□ -0.65
VIM-204ENST00000478746 ENHOQ6UWT2 76 aa11.01□□□□□ -0.65
VIM-204ENST00000478746 DPH3P1Q9H4G8 78 aa11.01□□□□□ -0.65
VIM-204ENST00000478746 PANO1I0J062 215 aa11□□□□□ -0.65
VIM-204ENST00000478746 ARL14EPLP0DKL9 152 aa11□□□□□ -0.65
VIM-204ENST00000478746 RAB5CP51148 216 aa11□□□□□ -0.65
VIM-204ENST00000478746 FLI1Q01543 452 aaPredicted RBP11□□□□□ -0.65
VIM-204ENST00000478746 FAM213BQ8TBF2 198 aa11□□□□□ -0.65
VIM-204ENST00000478746 CRPP02741 224 aa10.99□□□□□ -0.65
VIM-204ENST00000478746 STAG3L2P0CL84 134 aa10.99□□□□□ -0.65
VIM-204ENST00000478746 STAG3L3P0CL85 134 aa10.99□□□□□ -0.65
VIM-204ENST00000478746 ZNF726P1Q15940 193 aa10.99□□□□□ -0.65
VIM-204ENST00000478746 ALKAL2Q6UX46 152 aa10.99□□□□□ -0.65
VIM-204ENST00000478746 SDIM1Q6ZPB5 146 aa10.99□□□□□ -0.65
VIM-204ENST00000478746 PRNTQ86SH4 94 aa10.99□□□□□ -0.65
VIM-204ENST00000478746 MAP1LC3B2A6NCE7 125 aa10.98□□□□□ -0.65
VIM-204ENST00000478746 RHODO00212 210 aa10.98□□□□□ -0.65
VIM-204ENST00000478746 CXorf1O96002 111 aa10.98□□□□□ -0.65
VIM-204ENST00000478746 HLA-DQA1P01909 254 aa10.98□□□□□ -0.65
VIM-204ENST00000478746 FHITP49789 147 aa10.98□□□□□ -0.65
VIM-204ENST00000478746 SULT1A2P50226 295 aa10.98□□□□□ -0.65
VIM-204ENST00000478746 SAPCD1Q5SSQ6 148 aa10.98□□□□□ -0.65
VIM-204ENST00000478746 C15orf54Q8N8G6 183 aa10.98□□□□□ -0.65
VIM-204ENST00000478746 MAP1LC3BQ9GZQ8 125 aa10.98□□□□□ -0.65
VIM-204ENST00000478746 IGKV3D-20A0A0C4DH25 116 aa10.97□□□□□ -0.65
VIM-204ENST00000478746 SUMO1P63165 101 aaKnown RBP10.97□□□□□ -0.65
VIM-204ENST00000478746 FAM74A4Q5TZK3 123 aa10.97□□□□□ -0.65
VIM-204ENST00000478746 SUN5Q8TC36 379 aa10.97□□□□□ -0.65
VIM-204ENST00000478746 DPH3Q96FX2 82 aa10.97□□□□□ -0.65
VIM-204ENST00000478746 EPDR1Q9UM22 224 aa10.97□□□□□ -0.65
VIM-204ENST00000478746 ANGP03950 147 aaKnown RBP10.96□□□□□ -0.65
VIM-204ENST00000478746 H2AFB1P0C5Y9 115 aa10.96□□□□□ -0.65
VIM-204ENST00000478746 GCHFRP30047 84 aa10.96□□□□□ -0.65
VIM-204ENST00000478746 RPL19P84098 196 aaKnown RBP10.96□□□□□ -0.65
VIM-204ENST00000478746 SFT2D1Q8WV19 159 aa10.96□□□□□ -0.65
VIM-204ENST00000478746 IL36BQ9NZH7 164 aa10.96□□□□□ -0.65
VIM-204ENST00000478746 RPL36AP83881 106 aaKnown RBP10.95□□□□□ -0.66
VIM-204ENST00000478746 MBD3L1Q8WWY6 194 aa10.95□□□□□ -0.66
VIM-204ENST00000478746 RPL36ALQ969Q0 106 aaKnown RBP10.95□□□□□ -0.66
VIM-204ENST00000478746 TMEM167BQ9NRX6 74 aa10.95□□□□□ -0.66
VIM-204ENST00000478746 A0A087WWL8 130 aa10.94□□□□□ -0.66
VIM-204ENST00000478746 FABP5P3A8MUU1 101 aa10.94□□□□□ -0.66
VIM-204ENST00000478746 TEX46H3BTG2 121 aa10.94□□□□□ -0.66
VIM-204ENST00000478746 TRBV7-3A0A075B6L6 115 aa10.93□□□□□ -0.66
VIM-204ENST00000478746 TRBV6-8A0A0A6YYG3 113 aa10.93□□□□□ -0.66
VIM-204ENST00000478746 TRBV10-1A0A0K0K1A3 114 aa10.93□□□□□ -0.66
VIM-204ENST00000478746 A0A1B0GV50 99 aa10.93□□□□□ -0.66
VIM-204ENST00000478746 H3BVH4 76 aa10.93□□□□□ -0.66
VIM-204ENST00000478746 IFNA7P01567 189 aa10.93□□□□□ -0.66
VIM-204ENST00000478746 UBE2D3P61077 147 aa10.93□□□□□ -0.66
VIM-204ENST00000478746 UBE2D2P62837 147 aa10.93□□□□□ -0.66
VIM-204ENST00000478746 CIRBPQ14011 172 aaKnown RBP10.93□□□□□ -0.66
VIM-204ENST00000478746 MIAQ16674 131 aa10.93□□□□□ -0.66
VIM-204ENST00000478746 MPV17L2Q567V2 206 aa10.93□□□□□ -0.66
VIM-204ENST00000478746 TEX261Q6UWH6 196 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms