RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 LINC00269Q8N2A0 174 aa4.34□□□□□ -1.71
HDAC1-204ENST00000471488 OR5C1Q8NGR4 320 aa4.34□□□□□ -1.71
HDAC1-204ENST00000471488 TMED6Q8WW62 240 aa4.34□□□□□ -1.71
HDAC1-204ENST00000471488 RPL36ALQ969Q0 106 aaKnown RBP4.34□□□□□ -1.71
HDAC1-204ENST00000471488 CHCHD7Q9BUK0 85 aa4.34□□□□□ -1.71
HDAC1-204ENST00000471488 SLIRPQ9GZT3 109 aaKnown RBP4.34□□□□□ -1.71
HDAC1-204ENST00000471488 RBM38Q9H0Z9 239 aaKnown RBP4.34□□□□□ -1.71
HDAC1-204ENST00000471488 OTORQ9NRC9 128 aa4.34□□□□□ -1.71
HDAC1-204ENST00000471488 LYRM2Q9NU23 88 aaPredicted RBP4.34□□□□□ -1.71
HDAC1-204ENST00000471488 LPAP08519 4548 aa4.34□□□□□ -1.71
HDAC1-204ENST00000471488 CENPXA8MT69 81 aa4.33□□□□□ -1.72
HDAC1-204ENST00000471488 H3BMQ9 156 aa4.33□□□□□ -1.72
HDAC1-204ENST00000471488 H3BVH4 76 aa4.33□□□□□ -1.72
HDAC1-204ENST00000471488 M0R381 172 aa4.33□□□□□ -1.72
HDAC1-204ENST00000471488 GATCO43716 136 aaKnown RBP4.33□□□□□ -1.72
HDAC1-204ENST00000471488 COX6A2Q02221 97 aa4.33□□□□□ -1.72
HDAC1-204ENST00000471488 GAGE6Q13070 117 aa4.33□□□□□ -1.72
HDAC1-204ENST00000471488 RAB32Q13637 225 aa4.33□□□□□ -1.72
HDAC1-204ENST00000471488 MIAQ16674 131 aa4.33□□□□□ -1.72
HDAC1-204ENST00000471488 RGS21Q2M5E4 152 aa4.33□□□□□ -1.72
HDAC1-204ENST00000471488 STPG4Q8N801 248 aa4.33□□□□□ -1.72
HDAC1-204ENST00000471488 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.33□□□□□ -1.72
HDAC1-204ENST00000471488 SPACA4Q8TDM5 124 aa4.33□□□□□ -1.72
HDAC1-204ENST00000471488 LINC00479Q96M42 142 aa4.33□□□□□ -1.72
HDAC1-204ENST00000471488 KCNIP2Q9NS61 270 aa4.33□□□□□ -1.72
HDAC1-204ENST00000471488 OR5AC2Q9NZP5 309 aa4.33□□□□□ -1.72
HDAC1-204ENST00000471488 TRBV6-8A0A0A6YYG3 113 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 MUC21A0A0G2JKD1 596 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 A0A1W2PPV4 95 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 GRIFINA4D1Z8 144 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 H7C1H1 209 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 K7EQM0 130 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 M0R036 132 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 RHODO00212 210 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 TCRBP04435 133 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 DEFA3P59666 94 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 KRTAP10-8P60410 259 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 ZNF56Q15929 161 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 PRR4Q16378 134 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 LRRC37A5PQ49AS3 106 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 CLRN3Q8NCR9 226 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 OR11H4Q8NGC9 324 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 OR10G7Q8NGN6 311 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 MITD1Q8WV92 249 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 RNF185Q96GF1 192 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 SEC22CQ9BRL7 303 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 MRPS26Q9BYN8 205 aaKnown RBP4.32□□□□□ -1.72
HDAC1-204ENST00000471488 PSG8Q9UQ74 426 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 CHTOPQ9Y3Y2 248 aaKnown RBP4.32□□□□□ -1.72
HDAC1-204ENST00000471488 V9GYH0 126 aa4.32□□□□□ -1.72
HDAC1-204ENST00000471488 TRBV7-3A0A075B6L6 115 aa4.31□□□□□ -1.72
HDAC1-204ENST00000471488 TMSB15BA0A087X1C1 80 aa4.31□□□□□ -1.72
HDAC1-204ENST00000471488 IGKV3OR2-268A0A0C4DH90 116 aa4.31□□□□□ -1.72
HDAC1-204ENST00000471488 NAP1L6A6NFF2 107 aa4.31□□□□□ -1.72
HDAC1-204ENST00000471488 CCDC160A6NGH7 325 aa4.31□□□□□ -1.72
HDAC1-204ENST00000471488 B4DEV8 164 aa4.31□□□□□ -1.72
HDAC1-204ENST00000471488 SPINK6Q6UWN8 80 aa4.31□□□□□ -1.72
HDAC1-204ENST00000471488 SCGB1C1Q8TD33 95 aa4.31□□□□□ -1.72
HDAC1-204ENST00000471488 CHAC2Q8WUX2 184 aa4.31□□□□□ -1.72
HDAC1-204ENST00000471488 WDR61Q9GZS3 305 aaKnown RBP4.31□□□□□ -1.72
HDAC1-204ENST00000471488 CBY1Q9Y3M2 126 aa4.31□□□□□ -1.72
HDAC1-204ENST00000471488 PHLDA3Q9Y5J5 127 aa4.31□□□□□ -1.72
HDAC1-204ENST00000471488 TRAV26-2A0A0B4J265 109 aa4.3□□□□□ -1.72
HDAC1-204ENST00000471488 FAM231BA6NCW3 169 aa4.3□□□□□ -1.72
HDAC1-204ENST00000471488 F5H697 171 aa4.3□□□□□ -1.72
HDAC1-204ENST00000471488 IFNA7P01567 189 aa4.3□□□□□ -1.72
HDAC1-204ENST00000471488 ARMS2P0C7Q2 107 aa4.3□□□□□ -1.72
HDAC1-204ENST00000471488 TPT1P13693 172 aaKnown RBP4.3□□□□□ -1.72
HDAC1-204ENST00000471488 UBE2D3P61077 147 aa4.3□□□□□ -1.72
HDAC1-204ENST00000471488 RAB14P61106 215 aa4.3□□□□□ -1.72
HDAC1-204ENST00000471488 CNBPP62633 177 aaKnown RBP4.3□□□□□ -1.72
HDAC1-204ENST00000471488 UBE2D2P62837 147 aa4.3□□□□□ -1.72
HDAC1-204ENST00000471488 RBX1P62877 108 aa4.3□□□□□ -1.72
HDAC1-204ENST00000471488 FLI1Q01543 452 aaPredicted RBP4.3□□□□□ -1.72
HDAC1-204ENST00000471488 REG3AQ06141 175 aa4.3□□□□□ -1.72
HDAC1-204ENST00000471488 CIRBPQ14011 172 aaKnown RBP4.3□□□□□ -1.72
HDAC1-204ENST00000471488 HIGD2BQ4VC39 106 aa4.3□□□□□ -1.72
HDAC1-204ENST00000471488 UFSP1Q6NVU6 142 aa4.3□□□□□ -1.72
HDAC1-204ENST00000471488 MZT2BQ6NZ67 158 aa4.3□□□□□ -1.72
HDAC1-204ENST00000471488 DEDD2Q8WXF8 326 aa4.3□□□□□ -1.72
HDAC1-204ENST00000471488 PTH2Q96A98 100 aa4.3□□□□□ -1.72
HDAC1-204ENST00000471488 SMIM3Q9BZL3 60 aa4.3□□□□□ -1.72
HDAC1-204ENST00000471488 C11orf1Q9H5F2 150 aa4.3□□□□□ -1.72
HDAC1-204ENST00000471488 PLAC8Q9NZF1 115 aa4.3□□□□□ -1.72
HDAC1-204ENST00000471488 MUC2Q02817 5179 aa4.29□□□□□ -1.72
HDAC1-204ENST00000471488 IGKV3D-20A0A0C4DH25 116 aa4.29□□□□□ -1.72
HDAC1-204ENST00000471488 TCRAP04437 139 aa4.29□□□□□ -1.72
HDAC1-204ENST00000471488 PKIAP61925 76 aa4.29□□□□□ -1.72
HDAC1-204ENST00000471488 CACNG7P62955 275 aa4.29□□□□□ -1.72
HDAC1-204ENST00000471488 PRSS3P2Q8NHM4 247 aa4.29□□□□□ -1.72
HDAC1-204ENST00000471488 DERL1Q9BUN8 251 aa4.29□□□□□ -1.72
HDAC1-204ENST00000471488 TRAV34A0A0B4J273 112 aa4.28□□□□□ -1.72
HDAC1-204ENST00000471488 TRBV10-1A0A0K0K1A3 114 aa4.28□□□□□ -1.72
HDAC1-204ENST00000471488 FABP5P3A8MUU1 101 aa4.28□□□□□ -1.72
HDAC1-204ENST00000471488 NDUFS6O75380 124 aaKnown RBP4.28□□□□□ -1.72
HDAC1-204ENST00000471488 SIX6O95475 246 aa4.28□□□□□ -1.72
HDAC1-204ENST00000471488 SLPIP03973 132 aa4.28□□□□□ -1.72
HDAC1-204ENST00000471488 ARL14EPLP0DKL9 152 aa4.28□□□□□ -1.72
HDAC1-204ENST00000471488 SULT1A2P50226 295 aa4.28□□□□□ -1.72
HDAC1-204ENST00000471488 NKX2-5P52952 324 aaPredicted RBP4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 135.6 ms