RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 XKRY2A2RUG3 117 aa13.74□□□□□ -0.21
COL9A3-202ENST00000452372 M0R2N4 97 aa13.74□□□□□ -0.21
COL9A3-202ENST00000452372 GZMBP10144 247 aa13.74□□□□□ -0.21
COL9A3-202ENST00000452372 Q6ZSN1 163 aa13.74□□□□□ -0.21
COL9A3-202ENST00000452372 PRADC1Q9BSG0 188 aa13.74□□□□□ -0.21
COL9A3-202ENST00000452372 LY96Q9Y6Y9 160 aa13.74□□□□□ -0.21
COL9A3-202ENST00000452372 RHODO00212 210 aa13.73□□□□□ -0.21
COL9A3-202ENST00000452372 RTL8CO15255 209 aa13.73□□□□□ -0.21
COL9A3-202ENST00000452372 CRYGDP07320 174 aa13.73□□□□□ -0.21
COL9A3-202ENST00000452372 IGLC6P0CF74 106 aa13.73□□□□□ -0.21
COL9A3-202ENST00000452372 LYPD5Q6UWN5 251 aa13.73□□□□□ -0.21
COL9A3-202ENST00000452372 Q6ZR54 194 aa13.73□□□□□ -0.21
COL9A3-202ENST00000452372 SMIM7Q9BQ49 75 aa13.73□□□□□ -0.21
COL9A3-202ENST00000452372 SPANXN1Q5VSR9 72 aa13.72□□□□□ -0.21
COL9A3-202ENST00000452372 LINC00336Q6ZUF6 198 aa13.72□□□□□ -0.21
COL9A3-202ENST00000452372 SH2D6Q7Z4S9 175 aa13.72□□□□□ -0.21
COL9A3-202ENST00000452372 RNASE7Q9H1E1 156 aaKnown RBP13.72□□□□□ -0.21
COL9A3-202ENST00000452372 SMDT1Q9H4I9 107 aa13.72□□□□□ -0.21
COL9A3-202ENST00000452372 Q9H8V8 135 aa13.72□□□□□ -0.21
COL9A3-202ENST00000452372 A0A087WWL8 130 aa13.71□□□□□ -0.21
COL9A3-202ENST00000452372 ZNF727A8MUV8 499 aa13.71□□□□□ -0.21
COL9A3-202ENST00000452372 PEA15Q15121 130 aa13.71□□□□□ -0.21
COL9A3-202ENST00000452372 FAM74A4Q5TZK3 123 aa13.71□□□□□ -0.21
COL9A3-202ENST00000452372 FER1L6-AS1Q8NA97 138 aa13.71□□□□□ -0.21
COL9A3-202ENST00000452372 MUC21A0A0G2JKD1 596 aa13.7□□□□□ -0.22
COL9A3-202ENST00000452372 MUC21A0A140T8X8 626 aa13.7□□□□□ -0.22
COL9A3-202ENST00000452372 NBDYA0A0U1RRE5 68 aa13.69□□□□□ -0.22
COL9A3-202ENST00000452372 A0A1W2PPQ1 181 aa13.69□□□□□ -0.22
COL9A3-202ENST00000452372 C9JQL5 133 aa13.69□□□□□ -0.22
COL9A3-202ENST00000452372 F2Z2F3 143 aa13.69□□□□□ -0.22
COL9A3-202ENST00000452372 SRSF3P84103 164 aaKnown RBP13.69□□□□□ -0.22
COL9A3-202ENST00000452372 FAM74A3Q4VXF1 159 aa13.69□□□□□ -0.22
COL9A3-202ENST00000452372 FAM231DQ6ZW35 169 aa13.69□□□□□ -0.22
COL9A3-202ENST00000452372 TPPP3Q9BW30 176 aa13.69□□□□□ -0.22
COL9A3-202ENST00000452372 RPP21Q9H633 154 aaKnown RBP13.69□□□□□ -0.22
COL9A3-202ENST00000452372 RAB14P61106 215 aa13.68□□□□□ -0.22
COL9A3-202ENST00000452372 SSTP61278 116 aa13.68□□□□□ -0.22
COL9A3-202ENST00000452372 LINC01551Q86U37 167 aa13.68□□□□□ -0.22
COL9A3-202ENST00000452372 C14orf178Q8N769 122 aaPredicted RBP13.68□□□□□ -0.22
COL9A3-202ENST00000452372 TIRAPP58753 221 aa13.67□□□□□ -0.22
COL9A3-202ENST00000452372 CACNG7P62955 275 aa13.67□□□□□ -0.22
COL9A3-202ENST00000452372 GATCO43716 136 aaKnown RBP13.66□□□□□ -0.22
COL9A3-202ENST00000452372 ERVFC1-1P60608 527 aa13.66□□□□□ -0.22
COL9A3-202ENST00000452372 LYZL1Q6UWQ5 148 aa13.66□□□□□ -0.22
COL9A3-202ENST00000452372 PRSS29PA6NIE9 313 aa13.65□□□□□ -0.22
COL9A3-202ENST00000452372 SIVA1O15304 175 aa13.65□□□□□ -0.22
COL9A3-202ENST00000452372 RAB4BP61018 213 aa13.65□□□□□ -0.22
COL9A3-202ENST00000452372 TMEM241Q24JQ0 296 aa13.65□□□□□ -0.22
COL9A3-202ENST00000452372 WDR73Q6P4I2 378 aa13.65□□□□□ -0.22
COL9A3-202ENST00000452372 Q9UF83 564 aa13.65□□□□□ -0.22
COL9A3-202ENST00000452372 KIF25-AS1Q9Y6Z4 181 aa13.65□□□□□ -0.22
COL9A3-202ENST00000452372 RYR1P21817 5038 aa13.65□□□□□ -0.22
COL9A3-202ENST00000452372 LINC00694P0DN24 101 aa13.64□□□□□ -0.23
COL9A3-202ENST00000452372 CTRLP40313 264 aa13.64□□□□□ -0.23
COL9A3-202ENST00000452372 ATP6V0E2Q8NHE4 81 aa13.64□□□□□ -0.23
COL9A3-202ENST00000452372 AP1S3Q96PC3 154 aa13.64□□□□□ -0.23
COL9A3-202ENST00000452372 MSRB1Q9NZV6 116 aa13.64□□□□□ -0.23
COL9A3-202ENST00000452372 TRBV10-1A0A0K0K1A3 114 aa13.63□□□□□ -0.23
COL9A3-202ENST00000452372 GAGE12JA6NER3 117 aa13.63□□□□□ -0.23
COL9A3-202ENST00000452372 A8MWL6 223 aa13.63□□□□□ -0.23
COL9A3-202ENST00000452372 SMIM17P0DL12 118 aa13.63□□□□□ -0.23
COL9A3-202ENST00000452372 GAGE1Q13065 139 aa13.63□□□□□ -0.23
COL9A3-202ENST00000452372 GAGE4Q13068 117 aa13.63□□□□□ -0.23
COL9A3-202ENST00000452372 GAGE5Q13069 117 aa13.63□□□□□ -0.23
COL9A3-202ENST00000452372 GAGE13Q4V321 117 aa13.63□□□□□ -0.23
COL9A3-202ENST00000452372 CT83Q5H943 113 aa13.63□□□□□ -0.23
COL9A3-202ENST00000452372 TTC32Q5I0X7 151 aa13.63□□□□□ -0.23
COL9A3-202ENST00000452372 GTSF1Q8WW33 167 aa13.63□□□□□ -0.23
COL9A3-202ENST00000452372 CNFNQ9BYD5 112 aa13.63□□□□□ -0.23
COL9A3-202ENST00000452372 OSTCQ9NRP0 149 aa13.63□□□□□ -0.23
COL9A3-202ENST00000452372 NTF3P20783 257 aa13.62□□□□□ -0.23
COL9A3-202ENST00000452372 LINC00315P59091 139 aa13.62□□□□□ -0.23
COL9A3-202ENST00000452372 IFITM2Q01629 132 aa13.62□□□□□ -0.23
COL9A3-202ENST00000452372 ZNF56Q15929 161 aa13.62□□□□□ -0.23
COL9A3-202ENST00000452372 CLLU1Q5K131 121 aa13.62□□□□□ -0.23
COL9A3-202ENST00000452372 C1orf134Q5TEV5 83 aa13.62□□□□□ -0.23
COL9A3-202ENST00000452372 GTSF1LQ9H1H1 148 aa13.62□□□□□ -0.23
COL9A3-202ENST00000452372 NAT8Q9UHE5 227 aa13.62□□□□□ -0.23
COL9A3-202ENST00000452372 FOXA3P55318 350 aaPredicted RBP13.61□□□□□ -0.23
COL9A3-202ENST00000452372 RPL23P62829 140 aaKnown RBP13.61□□□□□ -0.23
COL9A3-202ENST00000452372 SOHLH1Q5JUK2 328 aa13.61□□□□□ -0.23
COL9A3-202ENST00000452372 KRTAP1-5Q9BYS1 174 aa13.61□□□□□ -0.23
COL9A3-202ENST00000452372 F5H697 171 aa13.6□□□□□ -0.23
COL9A3-202ENST00000452372 TRGC1P0CF51 173 aa13.6□□□□□ -0.23
COL9A3-202ENST00000452372 WFDC10BQ8IUB3 73 aa13.6□□□□□ -0.23
COL9A3-202ENST00000452372 ISOC2Q96AB3 205 aa13.6□□□□□ -0.23
COL9A3-202ENST00000452372 EVI2AP22794 236 aa13.59□□□□□ -0.23
COL9A3-202ENST00000452372 LELP1Q5T871 98 aa13.59□□□□□ -0.23
COL9A3-202ENST00000452372 C6orf223Q8N319 242 aa13.59□□□□□ -0.23
COL9A3-202ENST00000452372 OR10G8Q8NGN5 311 aa13.59□□□□□ -0.23
COL9A3-202ENST00000452372 TRBV7-3A0A075B6L6 115 aa13.58□□□□□ -0.24
COL9A3-202ENST00000452372 RPL36AP83881 106 aaKnown RBP13.58□□□□□ -0.24
COL9A3-202ENST00000452372 TWIST1Q15672 202 aa13.58□□□□□ -0.24
COL9A3-202ENST00000452372 C15orf54Q8N8G6 183 aa13.58□□□□□ -0.24
COL9A3-202ENST00000452372 TSKUQ8WUA8 353 aa13.58□□□□□ -0.24
COL9A3-202ENST00000452372 RPL36ALQ969Q0 106 aaKnown RBP13.58□□□□□ -0.24
COL9A3-202ENST00000452372 TRAV8-6A0A0B4J262 113 aa13.57□□□□□ -0.24
COL9A3-202ENST00000452372 FAM231BA6NCW3 169 aa13.57□□□□□ -0.24
COL9A3-202ENST00000452372 DNAH10OSP0CZ25 163 aa13.57□□□□□ -0.24
COL9A3-202ENST00000452372 BTF3P20290 206 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms