RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 GATA1P15976 413 aaPredicted RBP6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 REV3LO60673 3130 aa6.3□□□□□ -1.4
TMEM39A-202ENST00000438581 SLURP1P55000 103 aa6.29□□□□□ -1.4
TMEM39A-202ENST00000438581 CACNG7P62955 275 aa6.29□□□□□ -1.4
TMEM39A-202ENST00000438581 TDRG1Q3Y452 100 aa6.29□□□□□ -1.4
TMEM39A-202ENST00000438581 ODF3BA8MYP8 253 aa6.29□□□□□ -1.4
TMEM39A-202ENST00000438581 C11orf52Q96A22 123 aa6.29□□□□□ -1.4
TMEM39A-202ENST00000438581 ZC2HC1AQ96GY0 325 aa6.29□□□□□ -1.4
TMEM39A-202ENST00000438581 TRBV20-1A0A075B6N2 111 aa6.29□□□□□ -1.4
TMEM39A-202ENST00000438581 EIF4EBP1Q13541 118 aaPredicted RBP6.29□□□□□ -1.4
TMEM39A-202ENST00000438581 MPV17L2Q567V2 206 aa6.29□□□□□ -1.4
TMEM39A-202ENST00000438581 A0A1B0GWB2 263 aa6.29□□□□□ -1.4
TMEM39A-202ENST00000438581 C3orf22Q8N5N4 141 aa6.29□□□□□ -1.4
TMEM39A-202ENST00000438581 V9GYV3 84 aa6.29□□□□□ -1.4
TMEM39A-202ENST00000438581 SPRY2O43597 315 aa6.28□□□□□ -1.4
TMEM39A-202ENST00000438581 LOXL1Q08397 574 aaPredicted RBP6.28□□□□□ -1.4
TMEM39A-202ENST00000438581 ZNF876PQ49A33 203 aa6.28□□□□□ -1.4
TMEM39A-202ENST00000438581 FAM167A-AS1Q96KT0 104 aa6.28□□□□□ -1.4
TMEM39A-202ENST00000438581 AGPAT4-IT1Q9H0P7 198 aa6.28□□□□□ -1.4
TMEM39A-202ENST00000438581 TRBV12-3P01733 135 aa6.28□□□□□ -1.4
TMEM39A-202ENST00000438581 HBDP02042 147 aa6.28□□□□□ -1.4
TMEM39A-202ENST00000438581 SUMO2P61956 95 aaKnown RBP6.28□□□□□ -1.4
TMEM39A-202ENST00000438581 DEFB121Q5J5C9 76 aa6.28□□□□□ -1.4
TMEM39A-202ENST00000438581 RETNQ9HD89 108 aa6.28□□□□□ -1.4
TMEM39A-202ENST00000438581 NXT2Q9NPJ8 142 aaKnown RBP6.28□□□□□ -1.4
TMEM39A-202ENST00000438581 SPTBN5Q9NRC6 3674 aaKnown RBP6.28□□□□□ -1.4
TMEM39A-202ENST00000438581 SPEGQ15772 3267 aa6.28□□□□□ -1.4
TMEM39A-202ENST00000438581 H3BUA1 57 aa6.28□□□□□ -1.4
TMEM39A-202ENST00000438581 IGHG2P01859 326 aa6.28□□□□□ -1.4
TMEM39A-202ENST00000438581 DEFB1P60022 68 aa6.28□□□□□ -1.4
TMEM39A-202ENST00000438581 PRIMA1Q86XR5 153 aa6.28□□□□□ -1.4
TMEM39A-202ENST00000438581 BBC3Q96PG8 261 aaPredicted RBP6.28□□□□□ -1.4
TMEM39A-202ENST00000438581 LGALS1P09382 135 aaKnown RBP6.27□□□□□ -1.4
TMEM39A-202ENST00000438581 KRTAP10-9P60411 292 aa6.27□□□□□ -1.4
TMEM39A-202ENST00000438581 PAPPA-AS1Q5QFB9 102 aa6.27□□□□□ -1.4
TMEM39A-202ENST00000438581 PTPRBP23467 1997 aa6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 IGKV3D-20A0A0C4DH25 116 aa6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 CCL24O00175 119 aa6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 BUB3O43684 328 aa6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 Q6ZWC4 215 aa6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 C1orf158Q8N1D5 194 aa6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 INSP01308 110 aa6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 DEFB130BP0DP73 79 aa6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 DEFB130AP0DP74 79 aa6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 PSMB2P49721 201 aa6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 ANXA2RQ3ZCQ2 193 aa6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 ZNF492Q9P255 531 aa6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 TNRC6BQ9UPQ9 1833 aaKnown RBP6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 A6NDX4 124 aa6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 SYS1-DBNDD2H3BUS1 97 aa6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 CMC4P56277 68 aaPredicted RBP6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 LINC01620Q4KN68 170 aa6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 DPH3P1Q9H4G8 78 aa6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 LAMA1P25391 3075 aa6.27□□□□□ -1.41
TMEM39A-202ENST00000438581 IGKV1D-37A0A075B6S9 117 aa6.26□□□□□ -1.41
TMEM39A-202ENST00000438581 H7C2G1 150 aa6.26□□□□□ -1.41
TMEM39A-202ENST00000438581 IGHV4-31P0DP07 118 aa6.26□□□□□ -1.41
TMEM39A-202ENST00000438581 IFI27L1Q96BM0 104 aa6.26□□□□□ -1.41
TMEM39A-202ENST00000438581 IGHV4OR15-8A0A075B7B6 117 aa6.26□□□□□ -1.41
TMEM39A-202ENST00000438581 A0A087WW49 117 aa6.26□□□□□ -1.41
TMEM39A-202ENST00000438581 LYRM9A8MSI8 78 aa6.26□□□□□ -1.41
TMEM39A-202ENST00000438581 INS-IGF2F8WCM5 200 aa6.26□□□□□ -1.41
TMEM39A-202ENST00000438581 EIF4EBP3O60516 100 aaPredicted RBP6.26□□□□□ -1.41
TMEM39A-202ENST00000438581 FSTL3O95633 263 aa6.26□□□□□ -1.41
TMEM39A-202ENST00000438581 LGALS3P17931 250 aaKnown RBP6.26□□□□□ -1.41
TMEM39A-202ENST00000438581 UNQ9165/PRO28630Q6UXU0 137 aa6.26□□□□□ -1.41
TMEM39A-202ENST00000438581 COL6A3P12111 3177 aa6.26□□□□□ -1.41
TMEM39A-202ENST00000438581 CFHR3Q02985 330 aa6.26□□□□□ -1.41
TMEM39A-202ENST00000438581 C15orf53Q8NAA6 179 aa6.26□□□□□ -1.41
TMEM39A-202ENST00000438581 LINC00526Q96FQ7 95 aa6.26□□□□□ -1.41
TMEM39A-202ENST00000438581 HIST1H4GQ99525 98 aa6.26□□□□□ -1.41
TMEM39A-202ENST00000438581 EDA2RQ9HAV5 297 aa6.26□□□□□ -1.41
TMEM39A-202ENST00000438581 ANKRD29Q8N6D5 301 aa6.25□□□□□ -1.41
TMEM39A-202ENST00000438581 TOMM7Q9P0U1 55 aa6.25□□□□□ -1.41
TMEM39A-202ENST00000438581 PRAC2D3DTV9 90 aa6.25□□□□□ -1.41
TMEM39A-202ENST00000438581 LY6LH3BQJ8 138 aa6.25□□□□□ -1.41
TMEM39A-202ENST00000438581 IFI27P40305 119 aaPredicted RBP6.25□□□□□ -1.41
TMEM39A-202ENST00000438581 IGHV3-16A0A0C4DH30 117 aa6.25□□□□□ -1.41
TMEM39A-202ENST00000438581 LINC00694P0DN24 101 aa6.25□□□□□ -1.41
TMEM39A-202ENST00000438581 TMEM86BQ8N661 226 aa6.25□□□□□ -1.41
TMEM39A-202ENST00000438581 PHLDA1Q8WV24 401 aaPredicted RBP6.25□□□□□ -1.41
TMEM39A-202ENST00000438581 C9orf85Q96MD7 179 aa6.25□□□□□ -1.41
TMEM39A-202ENST00000438581 HIST2H2BDQ6DRA6 164 aa6.25□□□□□ -1.41
TMEM39A-202ENST00000438581 TM2D2Q9BX73 214 aa6.25□□□□□ -1.41
TMEM39A-202ENST00000438581 DSPP15924 2871 aaKnown RBP6.24□□□□□ -1.41
TMEM39A-202ENST00000438581 PCSK5Q92824 1860 aa6.24□□□□□ -1.41
TMEM39A-202ENST00000438581 RAI1Q7Z5J4 1906 aaPredicted RBP6.24□□□□□ -1.41
TMEM39A-202ENST00000438581 CRLF1O75462 422 aa6.24□□□□□ -1.41
TMEM39A-202ENST00000438581 EGR2P11161 476 aaPredicted RBP6.24□□□□□ -1.41
TMEM39A-202ENST00000438581 PMAIP1Q13794 54 aa6.24□□□□□ -1.41
TMEM39A-202ENST00000438581 KIR3DS1Q14943 382 aa6.24□□□□□ -1.41
TMEM39A-202ENST00000438581 ORMDL2Q53FV1 153 aa6.24□□□□□ -1.41
TMEM39A-202ENST00000438581 CHCHD5Q9BSY4 110 aa6.24□□□□□ -1.41
TMEM39A-202ENST00000438581 EDN2P20800 178 aa6.24□□□□□ -1.41
TMEM39A-202ENST00000438581 HERVK_113P63121 156 aa6.24□□□□□ -1.41
TMEM39A-202ENST00000438581 LINC01545Q5VT33 79 aa6.24□□□□□ -1.41
TMEM39A-202ENST00000438581 CHCHD1Q96BP2 118 aaKnown RBP6.24□□□□□ -1.41
TMEM39A-202ENST00000438581 GFRA4Q9GZZ7 299 aa6.24□□□□□ -1.41
TMEM39A-202ENST00000438581 JPT2Q9H910 190 aa6.24□□□□□ -1.41
TMEM39A-202ENST00000438581 IGHV1OR15-1A0A075B7D0 117 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 160.7 ms