RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 DEFB112Q30KQ8 113 aa10.72□□□□□ -0.69
LIG1-202ENST00000427526 NXPH4O95158 308 aa10.72□□□□□ -0.69
LIG1-202ENST00000427526 FAM110AQ9BQ89 295 aa10.72□□□□□ -0.69
LIG1-202ENST00000427526 IGKV3-7A0A075B6H7 116 aa10.71□□□□□ -0.69
LIG1-202ENST00000427526 OR11H12B2RN74 326 aa10.71□□□□□ -0.69
LIG1-202ENST00000427526 IGHV4-59P01825 116 aa10.71□□□□□ -0.69
LIG1-202ENST00000427526 CFHR3Q02985 330 aa10.71□□□□□ -0.69
LIG1-202ENST00000427526 OR11H1Q8NG94 326 aa10.71□□□□□ -0.69
LIG1-202ENST00000427526 OR11H2Q8NH07 326 aa10.71□□□□□ -0.69
LIG1-202ENST00000427526 DAZ1Q9NQZ3 744 aaKnown RBP10.71□□□□□ -0.69
LIG1-202ENST00000427526 NHP2Q9NX24 153 aaKnown RBP10.71□□□□□ -0.69
LIG1-202ENST00000427526 KIF25-AS1Q9Y6Z4 181 aa10.71□□□□□ -0.69
LIG1-202ENST00000427526 LINC00315P59091 139 aa10.71□□□□□ -0.69
LIG1-202ENST00000427526 SPATA25Q9BR10 227 aa10.71□□□□□ -0.69
LIG1-202ENST00000427526 KLLNB2CW77 178 aa10.71□□□□□ -0.7
LIG1-202ENST00000427526 C2orf66Q6UXQ4 117 aa10.71□□□□□ -0.7
LIG1-202ENST00000427526 MGPP08493 103 aa10.7□□□□□ -0.7
LIG1-202ENST00000427526 DEFB113Q30KQ7 82 aa10.7□□□□□ -0.7
LIG1-202ENST00000427526 MTURNQ8N3F0 131 aa10.7□□□□□ -0.7
LIG1-202ENST00000427526 BAALCQ8WXS3 180 aa10.7□□□□□ -0.7
LIG1-202ENST00000427526 PPP1R17O96001 155 aa10.7□□□□□ -0.7
LIG1-202ENST00000427526 EDN2P20800 178 aa10.7□□□□□ -0.7
LIG1-202ENST00000427526 MUC4Q99102 2169 aa10.69□□□□□ -0.7
LIG1-202ENST00000427526 CHD6Q8TD26 2715 aa10.69□□□□□ -0.7
LIG1-202ENST00000427526 IGHV4OR15-8A0A075B7B6 117 aa10.69□□□□□ -0.7
LIG1-202ENST00000427526 A0A087WW49 117 aa10.69□□□□□ -0.7
LIG1-202ENST00000427526 E9PLD3 99 aa10.69□□□□□ -0.7
LIG1-202ENST00000427526 LINC01619G3V211 115 aa10.69□□□□□ -0.7
LIG1-202ENST00000427526 K7EMT4 169 aa10.69□□□□□ -0.7
LIG1-202ENST00000427526 IGHV4-31P0DP07 118 aa10.69□□□□□ -0.7
LIG1-202ENST00000427526 SRD5A1P18405 259 aa10.69□□□□□ -0.7
LIG1-202ENST00000427526 HIST2H2BCQ6DN03 193 aa10.69□□□□□ -0.7
LIG1-202ENST00000427526 TRBV7-3A0A075B6L6 115 aa10.68□□□□□ -0.7
LIG1-202ENST00000427526 MYMXA0A1B0GTQ4 84 aa10.68□□□□□ -0.7
LIG1-202ENST00000427526 DCANP1Q8TF63 244 aa10.68□□□□□ -0.7
LIG1-202ENST00000427526 PRSS29PA6NIE9 313 aa10.68□□□□□ -0.7
LIG1-202ENST00000427526 IGLL5B9A064 214 aa10.68□□□□□ -0.7
LIG1-202ENST00000427526 C12orf74Q32Q52 190 aa10.68□□□□□ -0.7
LIG1-202ENST00000427526 RPL32P62910 135 aaKnown RBP10.67□□□□□ -0.7
LIG1-202ENST00000427526 HIST1H4GQ99525 98 aa10.67□□□□□ -0.7
LIG1-202ENST00000427526 APCP25054 2843 aa10.67□□□□□ -0.7
LIG1-202ENST00000427526 J3QLI3 93 aa10.67□□□□□ -0.7
LIG1-202ENST00000427526 BEX4Q9NWD9 120 aaPredicted RBP10.67□□□□□ -0.7
LIG1-202ENST00000427526 Q96MF0 132 aa10.66□□□□□ -0.7
LIG1-202ENST00000427526 TENM4Q6N022 2769 aa10.66□□□□□ -0.7
LIG1-202ENST00000427526 AGRNO00468 2067 aa10.66□□□□□ -0.7
LIG1-202ENST00000427526 CRYGDP07320 174 aa10.66□□□□□ -0.7
LIG1-202ENST00000427526 MRPL16Q9NX20 251 aaKnown RBP10.66□□□□□ -0.7
LIG1-202ENST00000427526 ZNF580Q9UK33 172 aa10.66□□□□□ -0.7
LIG1-202ENST00000427526 TNFRSF18Q9Y5U5 241 aa10.66□□□□□ -0.7
LIG1-202ENST00000427526 A0A1B0GWB2 263 aa10.66□□□□□ -0.7
LIG1-202ENST00000427526 POLR2KP53803 58 aaKnown RBP10.66□□□□□ -0.7
LIG1-202ENST00000427526 FAM159AQ6UWV7 190 aa10.66□□□□□ -0.7
LIG1-202ENST00000427526 JPT2Q9H910 190 aa10.66□□□□□ -0.7
LIG1-202ENST00000427526 DUSP14O95147 198 aaKnown RBP10.65□□□□□ -0.7
LIG1-202ENST00000427526 TSHBP01222 138 aa10.65□□□□□ -0.7
LIG1-202ENST00000427526 ID1P41134 155 aa10.65□□□□□ -0.7
LIG1-202ENST00000427526 FOXI2Q6ZQN5 318 aa10.65□□□□□ -0.7
LIG1-202ENST00000427526 LGALS1P09382 135 aaKnown RBP10.65□□□□□ -0.71
LIG1-202ENST00000427526 PSMB8P28062 276 aa10.65□□□□□ -0.71
LIG1-202ENST00000427526 C10orf99Q6UWK7 81 aa10.65□□□□□ -0.71
LIG1-202ENST00000427526 RNF183Q96D59 192 aa10.65□□□□□ -0.71
LIG1-202ENST00000427526 DOPEY2Q9Y3R5 2298 aa10.65□□□□□ -0.71
LIG1-202ENST00000427526 IGIPA6NJ69 53 aa10.64□□□□□ -0.71
LIG1-202ENST00000427526 PRADC1Q9BSG0 188 aa10.64□□□□□ -0.71
LIG1-202ENST00000427526 TEX15Q9BXT5 2789 aa10.64□□□□□ -0.71
LIG1-202ENST00000427526 NBPF19A0A087WUL8 3843 aa10.64□□□□□ -0.71
LIG1-202ENST00000427526 SUMO4Q6EEV6 95 aa10.64□□□□□ -0.71
LIG1-202ENST00000427526 KRTAP1-3Q8IUG1 177 aa10.64□□□□□ -0.71
LIG1-202ENST00000427526 CYSLTR1Q9Y271 337 aa10.63□□□□□ -0.71
LIG1-202ENST00000427526 MXRA5Q9NR99 2828 aa10.63□□□□□ -0.71
LIG1-202ENST00000427526 PRRC2AP48634 2157 aaKnown RBP10.63□□□□□ -0.71
LIG1-202ENST00000427526 CR1P17927 2039 aa10.63□□□□□ -0.71
LIG1-202ENST00000427526 CREBBPQ92793 2442 aa10.63□□□□□ -0.71
LIG1-202ENST00000427526 ZFP2Q6ZN57 461 aa10.63□□□□□ -0.71
LIG1-202ENST00000427526 LRRC75A-AS1Q8N1F1 130 aa10.63□□□□□ -0.71
LIG1-202ENST00000427526 TRAV12-3A0A0B4J271 114 aa10.63□□□□□ -0.71
LIG1-202ENST00000427526 FSHBP01225 129 aa10.63□□□□□ -0.71
LIG1-202ENST00000427526 IGLV4-69A0A075B6H9 119 aa10.62□□□□□ -0.71
LIG1-202ENST00000427526 CD7P09564 240 aa10.62□□□□□ -0.71
LIG1-202ENST00000427526 ZNF418Q8TF45 676 aaPredicted RBP10.62□□□□□ -0.71
LIG1-202ENST00000427526 TP53TG1Q9Y2A0 90 aa10.62□□□□□ -0.71
LIG1-202ENST00000427526 A0A087WWL8 130 aa10.62□□□□□ -0.71
LIG1-202ENST00000427526 LINC01549A6NIU2 74 aa10.62□□□□□ -0.71
LIG1-202ENST00000427526 ODF3Q96PU9 254 aa10.62□□□□□ -0.71
LIG1-202ENST00000427526 VCYO14598 125 aa10.61□□□□□ -0.71
LIG1-202ENST00000427526 C9orf85Q96MD7 179 aa10.61□□□□□ -0.71
LIG1-202ENST00000427526 ERG28Q9UKR5 140 aa10.61□□□□□ -0.71
LIG1-202ENST00000427526 J3QR89 54 aa10.61□□□□□ -0.71
LIG1-202ENST00000427526 LGALS9O00182 355 aa10.61□□□□□ -0.71
LIG1-202ENST00000427526 RRN3P1Q2M238 152 aa10.61□□□□□ -0.71
LIG1-202ENST00000427526 SPANXB1Q9NS25 103 aaPredicted RBP10.61□□□□□ -0.71
LIG1-202ENST00000427526 IGHV3-16A0A0C4DH30 117 aa10.6□□□□□ -0.71
LIG1-202ENST00000427526 TRBV27A0A0K0K1C4 114 aa10.6□□□□□ -0.71
LIG1-202ENST00000427526 F8W1H4 67 aa10.6□□□□□ -0.71
LIG1-202ENST00000427526 Q6YL49 198 aa10.6□□□□□ -0.71
LIG1-202ENST00000427526 TRBV6-5A0A0K0K1A5 114 aa10.6□□□□□ -0.71
LIG1-202ENST00000427526 C11orf86A6NJI1 115 aa10.6□□□□□ -0.71
LIG1-202ENST00000427526 ZNF815PA8K554 130 aa10.6□□□□□ -0.71
LIG1-202ENST00000427526 SMIM20Q8N5G0 67 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms