RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ZFP2Q6ZN57 461 aa7.21□□□□□ -1.25
CD44-207ENST00000425428 C14orf178Q8N769 122 aaPredicted RBP7.21□□□□□ -1.25
CD44-207ENST00000425428 C18orf15Q96N68 181 aa7.21□□□□□ -1.25
CD44-207ENST00000425428 F5H768 121 aa7.2□□□□□ -1.26
CD44-207ENST00000425428 RS1O15537 224 aa7.2□□□□□ -1.26
CD44-207ENST00000425428 TMEM88Q6PEY1 159 aa7.2□□□□□ -1.26
CD44-207ENST00000425428 FAM210BQ96KR6 192 aa7.2□□□□□ -1.26
CD44-207ENST00000425428 TMEM191AQ9H0A3 160 aa7.2□□□□□ -1.26
CD44-207ENST00000425428 TRAV10A0A0B4J240 114 aa7.2□□□□□ -1.26
CD44-207ENST00000425428 IGHV3-53P01767 116 aa7.2□□□□□ -1.26
CD44-207ENST00000425428 MT-ND6P03923 174 aa7.2□□□□□ -1.26
CD44-207ENST00000425428 CFAP126Q5VTH2 177 aa7.2□□□□□ -1.26
CD44-207ENST00000425428 ATRAIDQ6UW56 229 aa7.2□□□□□ -1.26
CD44-207ENST00000425428 PRADC1Q9BSG0 188 aa7.2□□□□□ -1.26
CD44-207ENST00000425428 CELA1Q9UNI1 258 aa7.2□□□□□ -1.26
CD44-207ENST00000425428 NACAE9PAV3 2078 aa7.19□□□□□ -1.26
CD44-207ENST00000425428 A0A087WWL8 130 aa7.19□□□□□ -1.26
CD44-207ENST00000425428 PPP1R17O96001 155 aa7.19□□□□□ -1.26
CD44-207ENST00000425428 HLA-DQA1P01909 254 aa7.19□□□□□ -1.26
CD44-207ENST00000425428 EVI2AP22794 236 aa7.19□□□□□ -1.26
CD44-207ENST00000425428 NANOS2P60321 138 aaKnown RBP7.19□□□□□ -1.26
CD44-207ENST00000425428 ELOBQ15370 118 aa7.19□□□□□ -1.26
CD44-207ENST00000425428 LINC00612Q8N6U2 182 aa7.19□□□□□ -1.26
CD44-207ENST00000425428 FRZBQ92765 325 aa7.19□□□□□ -1.26
CD44-207ENST00000425428 TRBV24-1A0A075B6N3 115 aa7.18□□□□□ -1.26
CD44-207ENST00000425428 DEFB131BA0A096LNP1 70 aa7.18□□□□□ -1.26
CD44-207ENST00000425428 IGHV3-73A0A0B4J1V6 119 aa7.18□□□□□ -1.26
CD44-207ENST00000425428 C12orf74Q32Q52 190 aa7.18□□□□□ -1.26
CD44-207ENST00000425428 ZNF575Q86XF7 245 aa7.18□□□□□ -1.26
CD44-207ENST00000425428 CBLN2Q8IUK8 224 aa7.18□□□□□ -1.26
CD44-207ENST00000425428 MSRB1Q9NZV6 116 aa7.18□□□□□ -1.26
CD44-207ENST00000425428 PRO0255Q9UI72 69 aa7.18□□□□□ -1.26
CD44-207ENST00000425428 HHLA3Q9XRX5 114 aa7.18□□□□□ -1.26
CD44-207ENST00000425428 RHOHQ15669 191 aa7.18□□□□□ -1.26
CD44-207ENST00000425428 MRAP2Q96G30 205 aa7.18□□□□□ -1.26
CD44-207ENST00000425428 ZNF479Q96JC4 524 aa7.18□□□□□ -1.26
CD44-207ENST00000425428 GNB1LQ9BYB4 327 aa7.18□□□□□ -1.26
CD44-207ENST00000425428 KLK5Q9Y337 293 aaPredicted RBP7.18□□□□□ -1.26
CD44-207ENST00000425428 TGIF2-C20orf24A0A0A6YYL0 155 aa7.17□□□□□ -1.26
CD44-207ENST00000425428 PAX4O43316 350 aa7.17□□□□□ -1.26
CD44-207ENST00000425428 PPBPP02775 128 aa7.17□□□□□ -1.26
CD44-207ENST00000425428 CKS2P33552 79 aa7.17□□□□□ -1.26
CD44-207ENST00000425428 Q6ZTC4 211 aa7.17□□□□□ -1.26
CD44-207ENST00000425428 TRAPPC1Q9Y5R8 145 aa7.17□□□□□ -1.26
CD44-207ENST00000425428 MEGF8Q7Z7M0 2845 aa7.16□□□□□ -1.26
CD44-207ENST00000425428 TRBV6-4A0A1B0GX49 114 aa7.16□□□□□ -1.26
CD44-207ENST00000425428 A0A1B0GXF2 115 aa7.16□□□□□ -1.26
CD44-207ENST00000425428 NUPR2A6NF83 97 aa7.16□□□□□ -1.26
CD44-207ENST00000425428 APCSP02743 223 aa7.16□□□□□ -1.26
CD44-207ENST00000425428 CRYGDP07320 174 aa7.16□□□□□ -1.26
CD44-207ENST00000425428 FAM104BQ5XKR9 115 aa7.16□□□□□ -1.26
CD44-207ENST00000425428 JPT2Q9H910 190 aa7.16□□□□□ -1.26
CD44-207ENST00000425428 EDA2RQ9HAV5 297 aa7.16□□□□□ -1.26
CD44-207ENST00000425428 TNFRSF18Q9Y5U5 241 aa7.16□□□□□ -1.26
CD44-207ENST00000425428 TRBV10-1A0A0K0K1A3 114 aa7.15□□□□□ -1.26
CD44-207ENST00000425428 K7EQD1 137 aa7.15□□□□□ -1.26
CD44-207ENST00000425428 RPS10P46783 165 aaKnown RBP7.15□□□□□ -1.26
CD44-207ENST00000425428 RPL36AP83881 106 aaKnown RBP7.15□□□□□ -1.26
CD44-207ENST00000425428 FABP9Q0Z7S8 132 aa7.15□□□□□ -1.26
CD44-207ENST00000425428 SH2D6Q7Z4S9 175 aa7.15□□□□□ -1.26
CD44-207ENST00000425428 AMN1Q8IY45 258 aa7.15□□□□□ -1.26
CD44-207ENST00000425428 PHLDA1Q8WV24 401 aaPredicted RBP7.15□□□□□ -1.26
CD44-207ENST00000425428 RPL36ALQ969Q0 106 aaKnown RBP7.15□□□□□ -1.26
CD44-207ENST00000425428 WWC2-AS2Q96NR7 200 aa7.15□□□□□ -1.26
CD44-207ENST00000425428 SAMD10Q9BYL1 202 aa7.15□□□□□ -1.26
CD44-207ENST00000425428 ORMDL3Q8N138 153 aa7.15□□□□□ -1.27
CD44-207ENST00000425428 DNAJC30Q96LL9 226 aa7.15□□□□□ -1.27
CD44-207ENST00000425428 SCO1O75880 301 aa7.14□□□□□ -1.27
CD44-207ENST00000425428 GATA1P15976 413 aaPredicted RBP7.14□□□□□ -1.27
CD44-207ENST00000425428 RAB4AP20338 218 aa7.14□□□□□ -1.27
CD44-207ENST00000425428 FHL2Q14192 279 aa7.14□□□□□ -1.27
CD44-207ENST00000425428 OR10J3Q5JRS4 329 aa7.14□□□□□ -1.27
CD44-207ENST00000425428 POM121L12Q8N7R1 296 aa7.14□□□□□ -1.27
CD44-207ENST00000425428 C15orf53Q8NAA6 179 aa7.14□□□□□ -1.27
CD44-207ENST00000425428 GATD1Q8NB37 220 aa7.14□□□□□ -1.27
CD44-207ENST00000425428 MRPL18Q9H0U6 180 aaKnown RBP7.14□□□□□ -1.27
CD44-207ENST00000425428 ICOSQ9Y6W8 199 aa7.14□□□□□ -1.27
CD44-207ENST00000425428 TRAV26-1A0A087WT03 109 aa7.13□□□□□ -1.27
CD44-207ENST00000425428 H3BNG1 76 aa7.13□□□□□ -1.27
CD44-207ENST00000425428 SRIP30626 198 aa7.13□□□□□ -1.27
CD44-207ENST00000425428 CRYBA4P53673 196 aa7.13□□□□□ -1.27
CD44-207ENST00000425428 MRPL23Q16540 153 aaKnown RBP7.13□□□□□ -1.27
CD44-207ENST00000425428 SUMO4Q6EEV6 95 aa7.13□□□□□ -1.27
CD44-207ENST00000425428 TMEM136Q6ZRR5 245 aa7.13□□□□□ -1.27
CD44-207ENST00000425428 SLC25A29Q8N8R3 303 aa7.13□□□□□ -1.27
CD44-207ENST00000425428 NIT2Q9NQR4 276 aa7.13□□□□□ -1.27
CD44-207ENST00000425428 LAMTOR2Q9Y2Q5 125 aa7.13□□□□□ -1.27
CD44-207ENST00000425428 FBN3Q75N90 2809 aa7.13□□□□□ -1.27
CD44-207ENST00000425428 A0A0J9YY99 117 aa7.13□□□□□ -1.27
CD44-207ENST00000425428 IGLL5B9A064 214 aa7.13□□□□□ -1.27
CD44-207ENST00000425428 GYPEP15421 78 aa7.13□□□□□ -1.27
CD44-207ENST00000425428 RAB5AP20339 215 aa7.13□□□□□ -1.27
CD44-207ENST00000425428 TCTAP57738 103 aa7.13□□□□□ -1.27
CD44-207ENST00000425428 MRPL51Q4U2R6 128 aaKnown RBP7.13□□□□□ -1.27
CD44-207ENST00000425428 ST20Q9HBF5 79 aa7.13□□□□□ -1.27
CD44-207ENST00000425428 KIF25-AS1Q9Y6Z4 181 aa7.13□□□□□ -1.27
CD44-207ENST00000425428 TRBV7-3A0A075B6L6 115 aa7.12□□□□□ -1.27
CD44-207ENST00000425428 D6R8Y8 96 aa7.12□□□□□ -1.27
CD44-207ENST00000425428 NUDT3O95989 172 aa7.12□□□□□ -1.27
CD44-207ENST00000425428 HOXA5P20719 270 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms