RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 OR2H1Q9GZK4 316 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 NXT2Q9NPJ8 142 aaKnown RBP2.47□□□□□ -2.01
VPS54-204ENST00000416400 PRNDQ9UKY0 176 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 EPDR1Q9UM22 224 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 HIGD1AQ9Y241 93 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 ICOSQ9Y6W8 199 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 UBR3Q6ZT12 1888 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 ZSWIM8A7E2V4 1837 aa2.47□□□□□ -2.01
VPS54-204ENST00000416400 SBF1O95248 1867 aa2.46□□□□□ -2.02
VPS54-204ENST00000416400 COL5A3P25940 1745 aaPredicted RBP2.46□□□□□ -2.02
VPS54-204ENST00000416400 WDR90Q96KV7 1748 aa2.46□□□□□ -2.02
VPS54-204ENST00000416400 TRBV25-1A0A075B6N4 114 aa2.46□□□□□ -2.02
VPS54-204ENST00000416400 IGKV1OR2-108A0A075B7D4 117 aa2.46□□□□□ -2.02
VPS54-204ENST00000416400 TRAV2A0A0B4J234 112 aa2.46□□□□□ -2.02
VPS54-204ENST00000416400 TMEM30CPA0ZSE6 113 aa2.46□□□□□ -2.02
VPS54-204ENST00000416400 K7EMI3 77 aa2.46□□□□□ -2.02
VPS54-204ENST00000416400 NPFFO15130 113 aa2.46□□□□□ -2.02
VPS54-204ENST00000416400 RNASE2P10153 161 aaKnown RBP2.46□□□□□ -2.02
VPS54-204ENST00000416400 CRYGSP22914 178 aa2.46□□□□□ -2.02
VPS54-204ENST00000416400 HLA-DMBP28068 263 aa2.46□□□□□ -2.02
VPS54-204ENST00000416400 FCER1GP30273 86 aa2.46□□□□□ -2.02
VPS54-204ENST00000416400 UBE2L3P68036 154 aaKnown RBP2.46□□□□□ -2.02
VPS54-204ENST00000416400 ERHP84090 104 aaKnown RBP2.46□□□□□ -2.02
VPS54-204ENST00000416400 KRTAP5-5Q701N2 237 aaPredicted RBP2.46□□□□□ -2.02
VPS54-204ENST00000416400 C3orf22Q8N5N4 141 aa2.46□□□□□ -2.02
VPS54-204ENST00000416400 C15orf53Q8NAA6 179 aa2.46□□□□□ -2.02
VPS54-204ENST00000416400 LINC00526Q96FQ7 95 aa2.46□□□□□ -2.02
VPS54-204ENST00000416400 U3KQK5 164 aa2.46□□□□□ -2.02
VPS54-204ENST00000416400 CCDC88CQ9P219 2028 aa2.46□□□□□ -2.02
VPS54-204ENST00000416400 SCN8AQ9UQD0 1980 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 PLXNB3Q9ULL4 1909 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.45□□□□□ -2.02
VPS54-204ENST00000416400 IGKV1D-43A0A0B4J1Z2 117 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 IGKV1-12A0A0C4DH73 117 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 LOC107984156A0A0G2JMH3 177 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 LINC01546A6NGU7 62 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 C8orf87E5RJ46 101 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 H3BQ85 93 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 CCDC179H3BU77 68 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 J3QLI3 93 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 M0R2P5 195 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 NCR2O95944 276 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 IGKV1D-12P01611 117 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 TRACP01848 142 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 COX6CP09669 75 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 FXYD2P54710 66 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 PLGLAQ15195 96 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 ATXN8Q156A1 80 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 TMEM170BQ5T4T1 132 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 C9orf153Q5TBE3 101 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 HES3Q5TGS1 186 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 GDF5OSQ5U4N7 250 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 ARL17AQ8IVW1 177 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 SLC37A2Q8TED4 501 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 ZNF714Q96N38 554 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 TP73-AS1Q9UF72 201 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 MCM3APO60318 1980 aa2.45□□□□□ -2.02
VPS54-204ENST00000416400 MYLKQ15746 1914 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 DOCK4Q8N1I0 1966 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 TRAV12-1A0A0B4J245 112 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 TRBV7-7A0A0K0K1E9 115 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 C19orf71A6NCJ1 209 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 A8MWP4 228 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 F5H768 121 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 SLC25A20O43772 301 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 LTAP01374 205 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 CLPSP04118 112 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 P0DMU3 169 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 FAM231AP0DMU4 169 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 FAM231CP0DMU5 169 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 COL8A2P25067 703 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 CKS2P33552 79 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 GLRXP35754 106 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 MP68P56378 58 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 UBE2D3P61077 147 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 TMEM258P61165 79 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 UBE2D2P62837 147 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 NNATQ16517 81 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 TEX36Q5VZQ5 186 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 C10orf113Q5VZT2 155 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 MIR17HGQ75NE6 70 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 FAM19A5Q7Z5A7 132 aaPredicted RBP2.44□□□□□ -2.02
VPS54-204ENST00000416400 FAM19A3Q7Z5A8 133 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 LINC00643Q86TS7 51 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 ANKRD29Q8N6D5 301 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 OR1L8Q8NGR8 309 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 TRGV9Q99603 122 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 NAA38Q9BRA0 125 aaKnown RBP2.44□□□□□ -2.02
VPS54-204ENST00000416400 DYNLRB1Q9NP97 96 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 LAMTOR3Q9UHA4 124 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 HHLA3Q9XRX5 114 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 TIMM8BQ9Y5J9 83 aaPredicted RBP2.44□□□□□ -2.02
VPS54-204ENST00000416400 CHCHD2Q9Y6H1 151 aaPredicted RBP2.44□□□□□ -2.02
VPS54-204ENST00000416400 THSD7AQ9UPZ6 1657 aa2.44□□□□□ -2.02
VPS54-204ENST00000416400 PLXNA3P51805 1871 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 CASP8AP2Q9UKL3 1982 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 DOCK6Q96HP0 2047 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 TRBV7-3A0A075B6L6 115 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 IGKV3D-11A0A0A0MRZ8 115 aa2.43□□□□□ -2.02
VPS54-204ENST00000416400 A0A0B4J2C4 111 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms