RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 SYT8Q8NBV8 401 aa4.28□□□□□ -1.72
CCDC88A-203ENST00000412148 M0QY20 66 aa4.28□□□□□ -1.73
CCDC88A-203ENST00000412148 ZNF688P0C7X2 276 aa4.28□□□□□ -1.73
CCDC88A-203ENST00000412148 CDSNQ15517 529 aa4.28□□□□□ -1.73
CCDC88A-203ENST00000412148 FAM159AQ6UWV7 190 aa4.28□□□□□ -1.73
CCDC88A-203ENST00000412148 Q6ZUT4 128 aa4.28□□□□□ -1.73
CCDC88A-203ENST00000412148 TMEM263Q8WUH6 116 aaKnown RBP4.28□□□□□ -1.73
CCDC88A-203ENST00000412148 CARD19Q96LW7 228 aa4.28□□□□□ -1.73
CCDC88A-203ENST00000412148 BDP1A6H8Y1 2624 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 ZFHX4Q86UP3 3567 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 IGHV3-16A0A0C4DH30 117 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 TRBV30A0A0K0K1B3 111 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 TCL1BO95988 128 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 TGFAP01135 160 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 MGPP08493 103 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 CKS1BP61024 79 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 MRPL23Q16540 153 aaKnown RBP4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 ZNRF2Q8NHG8 242 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 PLA2G2DQ9UNK4 145 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 PKDREJQ9NTG1 2253 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 M0R2P5 195 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 GNRH2O43555 120 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 IGHV3-33P01772 117 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 SRD5A1P18405 259 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 INSL3P51460 131 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 C20orf203Q8NBC4 194 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 RAX2Q96IS3 184 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 RHPN1-AS1Q9BWJ2 59 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 SPANXDQ9BXN6 97 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 SPANXCQ9NY87 97 aa4.27□□□□□ -1.73
CCDC88A-203ENST00000412148 A0A1W2PPR1 153 aa4.26□□□□□ -1.73
CCDC88A-203ENST00000412148 TIMM17BO60830 172 aa4.26□□□□□ -1.73
CCDC88A-203ENST00000412148 LGALS3P17931 250 aaKnown RBP4.26□□□□□ -1.73
CCDC88A-203ENST00000412148 TSPEAR-AS2P59090 65 aa4.26□□□□□ -1.73
CCDC88A-203ENST00000412148 MRPS36P82909 103 aaKnown RBP4.26□□□□□ -1.73
CCDC88A-203ENST00000412148 CITED1Q99966 193 aa4.26□□□□□ -1.73
CCDC88A-203ENST00000412148 KLK15Q9H2R5 256 aa4.26□□□□□ -1.73
CCDC88A-203ENST00000412148 BSNQ9UPA5 3926 aa4.26□□□□□ -1.73
CCDC88A-203ENST00000412148 PRRC2CQ9Y520 2896 aaKnown RBP4.26□□□□□ -1.73
CCDC88A-203ENST00000412148 A0A0J9YXY3 114 aa4.26□□□□□ -1.73
CCDC88A-203ENST00000412148 I3L3M4 83 aa4.26□□□□□ -1.73
CCDC88A-203ENST00000412148 RHODO00212 210 aa4.26□□□□□ -1.73
CCDC88A-203ENST00000412148 PSMB2P49721 201 aa4.26□□□□□ -1.73
CCDC88A-203ENST00000412148 LINC00467Q9BRT7 94 aa4.26□□□□□ -1.73
CCDC88A-203ENST00000412148 BPESC1Q9GZL8 116 aa4.26□□□□□ -1.73
CCDC88A-203ENST00000412148 APC2O95996 2303 aa4.25□□□□□ -1.73
CCDC88A-203ENST00000412148 IGHV3OR16-13A0A075B7E8 117 aa4.25□□□□□ -1.73
CCDC88A-203ENST00000412148 IGHV3-49A0A0A0MS15 119 aa4.25□□□□□ -1.73
CCDC88A-203ENST00000412148 IGHV3-74A0A0B4J1X5 117 aa4.25□□□□□ -1.73
CCDC88A-203ENST00000412148 TRAV2A0A0B4J234 112 aa4.25□□□□□ -1.73
CCDC88A-203ENST00000412148 FAM240AA0A1B0GVK7 77 aa4.25□□□□□ -1.73
CCDC88A-203ENST00000412148 TRBV12-3P01733 135 aa4.25□□□□□ -1.73
CCDC88A-203ENST00000412148 SPINK8P0C7L1 97 aa4.25□□□□□ -1.73
CCDC88A-203ENST00000412148 ZNF22P17026 224 aaPredicted RBP4.25□□□□□ -1.73
CCDC88A-203ENST00000412148 FHL3Q13643 280 aa4.25□□□□□ -1.73
CCDC88A-203ENST00000412148 DEFB121Q5J5C9 76 aa4.25□□□□□ -1.73
CCDC88A-203ENST00000412148 KLHL30-AS1Q8NEE0 82 aa4.25□□□□□ -1.73
CCDC88A-203ENST00000412148 ERG28Q9UKR5 140 aa4.25□□□□□ -1.73
CCDC88A-203ENST00000412148 SELENOKQ9Y6D0 94 aa4.25□□□□□ -1.73
CCDC88A-203ENST00000412148 CFAP47Q6ZTR5 3102 aa4.25□□□□□ -1.73
CCDC88A-203ENST00000412148 XGP55808 180 aa4.25□□□□□ -1.73
CCDC88A-203ENST00000412148 Q6ZS46 218 aa4.25□□□□□ -1.73
CCDC88A-203ENST00000412148 TRGV11A0A075B6L2 103 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 LOC107984156A0A0G2JMH3 177 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 K7EQG2 157 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 SLC25A20O43772 301 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 SCGB1C2P0DMR2 95 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 PSMB8P28062 276 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 RPL11P62913 178 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 ATXN8Q156A1 80 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 DGAT2L7PQ6IED9 249 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 ARL17AQ8IVW1 177 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 C11orf44Q8N8P7 122 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 LITAFQ99732 161 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 GEMIN7Q9H840 131 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 IGLV4-3A0A075B6K6 122 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 IGHV1OR15-1A0A075B7D0 117 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 H3BT86 120 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 GATA3P23771 443 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 RPL39P62891 51 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 TMEM170BQ5T4T1 132 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 FAM19A3Q7Z5A8 133 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 ANKRD29Q8N6D5 301 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 PEMTQ9UBM1 199 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 A0A087WWL8 130 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 TRBV10-2A0A0K0K1G8 114 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 EIF4EBP3O60516 100 aaPredicted RBP4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 IFITM1P13164 125 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 PRORYQ9H606 182 aa4.24□□□□□ -1.73
CCDC88A-203ENST00000412148 KALRNO60229 2985 aa4.23□□□□□ -1.73
CCDC88A-203ENST00000412148 PCNX1Q96RV3 2341 aa4.23□□□□□ -1.73
CCDC88A-203ENST00000412148 IGLV5-45A0A087WSX0 123 aa4.23□□□□□ -1.73
CCDC88A-203ENST00000412148 TINCRA0A1B0GVN0 87 aa4.23□□□□□ -1.73
CCDC88A-203ENST00000412148 SNRPD3P62318 126 aaKnown RBP4.23□□□□□ -1.73
CCDC88A-203ENST00000412148 TMEM219Q86XT9 240 aa4.23□□□□□ -1.73
CCDC88A-203ENST00000412148 C10orf105Q8TEF2 133 aa4.23□□□□□ -1.73
CCDC88A-203ENST00000412148 FAM104AQ969W3 186 aa4.23□□□□□ -1.73
CCDC88A-203ENST00000412148 DNAJC30Q96LL9 226 aa4.23□□□□□ -1.73
CCDC88A-203ENST00000412148 TIMM21Q9BVV7 248 aa4.23□□□□□ -1.73
CCDC88A-203ENST00000412148 ROS1P08922 2347 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms