RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 PRSS47A8MTI9 375 aa9.85□□□□□ -0.83
LIMS1-204ENST00000409441 SMKR1H3BMG3 65 aa9.85□□□□□ -0.83
LIMS1-204ENST00000409441 H3BVH4 76 aa9.85□□□□□ -0.83
LIMS1-204ENST00000409441 NCR2O95944 276 aa9.85□□□□□ -0.83
LIMS1-204ENST00000409441 HBDP02042 147 aa9.85□□□□□ -0.83
LIMS1-204ENST00000409441 DEFB121Q5J5C9 76 aa9.85□□□□□ -0.83
LIMS1-204ENST00000409441 LINC01545Q5VT33 79 aa9.85□□□□□ -0.83
LIMS1-204ENST00000409441 ATOH7Q8N100 152 aa9.85□□□□□ -0.83
LIMS1-204ENST00000409441 A0A096LNJ9 63 aa9.84□□□□□ -0.83
LIMS1-204ENST00000409441 A0A0J9YX75 114 aa9.84□□□□□ -0.83
LIMS1-204ENST00000409441 H3BMM0 161 aa9.84□□□□□ -0.83
LIMS1-204ENST00000409441 TNFRSF6BO95407 300 aa9.84□□□□□ -0.83
LIMS1-204ENST00000409441 RNASE4P34096 147 aaKnown RBP9.84□□□□□ -0.83
LIMS1-204ENST00000409441 LEPP41159 167 aa9.84□□□□□ -0.83
LIMS1-204ENST00000409441 STHQ8IWL8 128 aa9.84□□□□□ -0.83
LIMS1-204ENST00000409441 SNHG12Q9BXW3 62 aa9.84□□□□□ -0.83
LIMS1-204ENST00000409441 A8MZ25 164 aa9.83□□□□□ -0.84
LIMS1-204ENST00000409441 EREGO14944 169 aa9.83□□□□□ -0.84
LIMS1-204ENST00000409441 HLA-DRB4P13762 266 aa9.83□□□□□ -0.84
LIMS1-204ENST00000409441 S100A4P26447 101 aaKnown RBP9.83□□□□□ -0.84
LIMS1-204ENST00000409441 ANXA2RQ3ZCQ2 193 aa9.83□□□□□ -0.84
LIMS1-204ENST00000409441 Q6ZQT7 251 aa9.83□□□□□ -0.84
LIMS1-204ENST00000409441 MRAP2Q96G30 205 aa9.83□□□□□ -0.84
LIMS1-204ENST00000409441 ST20Q9HBF5 79 aa9.83□□□□□ -0.84
LIMS1-204ENST00000409441 SCRT2Q9NQ03 307 aa9.83□□□□□ -0.84
LIMS1-204ENST00000409441 HLA-DRB4X5D2U9 266 aa9.83□□□□□ -0.84
LIMS1-204ENST00000409441 RBMY1BA6NDE4 496 aaKnown RBP9.82□□□□□ -0.84
LIMS1-204ENST00000409441 RBMY1EA6NEQ0 496 aaKnown RBP9.82□□□□□ -0.84
LIMS1-204ENST00000409441 J3KRW8 73 aa9.82□□□□□ -0.84
LIMS1-204ENST00000409441 IGKV3-20P01619 116 aa9.82□□□□□ -0.84
LIMS1-204ENST00000409441 RBMY1DP0C7P1 496 aaKnown RBP9.82□□□□□ -0.84
LIMS1-204ENST00000409441 RPL35AP18077 110 aaKnown RBP9.82□□□□□ -0.84
LIMS1-204ENST00000409441 EVI2AP22794 236 aa9.82□□□□□ -0.84
LIMS1-204ENST00000409441 Q8N8P6 123 aa9.82□□□□□ -0.84
LIMS1-204ENST00000409441 HSBP1L1C9JCN9 74 aa9.82□□□□□ -0.84
LIMS1-204ENST00000409441 DUSP14O95147 198 aaKnown RBP9.82□□□□□ -0.84
LIMS1-204ENST00000409441 TRPT1Q86TN4 253 aaKnown RBP9.82□□□□□ -0.84
LIMS1-204ENST00000409441 PHLDA3Q9Y5J5 127 aa9.82□□□□□ -0.84
LIMS1-204ENST00000409441 NXPH4O95158 308 aa9.81□□□□□ -0.84
LIMS1-204ENST00000409441 HNRNPA3P51991 378 aaKnown RBP9.81□□□□□ -0.84
LIMS1-204ENST00000409441 LGALS9BQ3B8N2 356 aa9.81□□□□□ -0.84
LIMS1-204ENST00000409441 MAJINQ3KP22 176 aa9.81□□□□□ -0.84
LIMS1-204ENST00000409441 LGALS9CQ6DKI2 356 aa9.81□□□□□ -0.84
LIMS1-204ENST00000409441 MRAPQ8TCY5 172 aa9.81□□□□□ -0.84
LIMS1-204ENST00000409441 FCER1GP30273 86 aa9.8□□□□□ -0.84
LIMS1-204ENST00000409441 FAM159AQ6UWV7 190 aa9.8□□□□□ -0.84
LIMS1-204ENST00000409441 Q6ZN92 141 aa9.8□□□□□ -0.84
LIMS1-204ENST00000409441 NRACQ8N912 160 aa9.8□□□□□ -0.84
LIMS1-204ENST00000409441 CLUHP3Q96NS8 147 aa9.8□□□□□ -0.84
LIMS1-204ENST00000409441 DPH3P1Q9H4G8 78 aa9.8□□□□□ -0.84
LIMS1-204ENST00000409441 TIMM8BQ9Y5J9 83 aaPredicted RBP9.8□□□□□ -0.84
LIMS1-204ENST00000409441 DNAH3Q8TD57 4116 aa9.79□□□□□ -0.84
LIMS1-204ENST00000409441 IGLV2-18A0A075B6J9 118 aa9.79□□□□□ -0.84
LIMS1-204ENST00000409441 C7orf71A4D174 169 aa9.79□□□□□ -0.84
LIMS1-204ENST00000409441 RNASE3P12724 160 aaKnown RBP9.79□□□□□ -0.84
LIMS1-204ENST00000409441 TSPOP30536 169 aa9.79□□□□□ -0.84
LIMS1-204ENST00000409441 IFI27L1Q96BM0 104 aa9.79□□□□□ -0.84
LIMS1-204ENST00000409441 MRPS16Q9Y3D3 137 aaKnown RBP9.79□□□□□ -0.84
LIMS1-204ENST00000409441 AGRNO00468 2067 aa9.79□□□□□ -0.84
LIMS1-204ENST00000409441 A8MTW9 85 aa9.78□□□□□ -0.84
LIMS1-204ENST00000409441 M0R381 172 aa9.78□□□□□ -0.84
LIMS1-204ENST00000409441 GAS8-AS1O95177 125 aa9.78□□□□□ -0.84
LIMS1-204ENST00000409441 AMTNQ6UX39 209 aa9.78□□□□□ -0.84
LIMS1-204ENST00000409441 AP1S3Q96PC3 154 aa9.78□□□□□ -0.84
LIMS1-204ENST00000409441 CSTL1Q9H114 145 aa9.78□□□□□ -0.84
LIMS1-204ENST00000409441 MEGF8Q7Z7M0 2845 aa9.78□□□□□ -0.84
LIMS1-204ENST00000409441 A0A1B0GV90 55 aa9.78□□□□□ -0.84
LIMS1-204ENST00000409441 GNRH2O43555 120 aa9.78□□□□□ -0.84
LIMS1-204ENST00000409441 PPP1R17O96001 155 aa9.78□□□□□ -0.84
LIMS1-204ENST00000409441 GATA1P15976 413 aaPredicted RBP9.78□□□□□ -0.84
LIMS1-204ENST00000409441 NUTF2P61970 127 aaKnown RBP9.78□□□□□ -0.84
LIMS1-204ENST00000409441 KIR3DS1Q14943 382 aa9.78□□□□□ -0.84
LIMS1-204ENST00000409441 POM121L12Q8N7R1 296 aa9.78□□□□□ -0.84
LIMS1-204ENST00000409441 H0Y8G0 127 aa9.77□□□□□ -0.85
LIMS1-204ENST00000409441 K7EMI3 77 aa9.77□□□□□ -0.85
LIMS1-204ENST00000409441 APOC4P55056 127 aa9.77□□□□□ -0.85
LIMS1-204ENST00000409441 FXYD7P58549 80 aa9.77□□□□□ -0.85
LIMS1-204ENST00000409441 MORN3Q6PF18 240 aaPredicted RBP9.77□□□□□ -0.85
LIMS1-204ENST00000409441 KIR2DL5BQ8NHK3 375 aa9.77□□□□□ -0.85
LIMS1-204ENST00000409441 C20orf78Q9BR46 151 aa9.77□□□□□ -0.85
LIMS1-204ENST00000409441 hDV102S1A0JD36 115 aa9.76□□□□□ -0.85
LIMS1-204ENST00000409441 GIG44P09565 113 aaPredicted RBP9.76□□□□□ -0.85
LIMS1-204ENST00000409441 CDKN1BP46527 198 aa9.76□□□□□ -0.85
LIMS1-204ENST00000409441 GOLT1BQ9Y3E0 138 aa9.76□□□□□ -0.85
LIMS1-204ENST00000409441 TRAV12-3A0A0B4J271 114 aa9.75□□□□□ -0.85
LIMS1-204ENST00000409441 LAGE3Q14657 143 aa9.75□□□□□ -0.85
LIMS1-204ENST00000409441 SPINK13Q1W4C9 94 aa9.75□□□□□ -0.85
LIMS1-204ENST00000409441 PMCHL2Q9BQD1 86 aa9.75□□□□□ -0.85
LIMS1-204ENST00000409441 SMIM2Q9BVW6 85 aa9.75□□□□□ -0.85
LIMS1-204ENST00000409441 XCL2Q9UBD3 114 aa9.75□□□□□ -0.85
LIMS1-204ENST00000409441 TRAV26-2A0A0B4J265 109 aa9.74□□□□□ -0.85
LIMS1-204ENST00000409441 ATP5LO75964 103 aa9.74□□□□□ -0.85
LIMS1-204ENST00000409441 SLC25A34Q6PIV7 304 aa9.74□□□□□ -0.85
LIMS1-204ENST00000409441 SBSPONQ8IVN8 264 aa9.74□□□□□ -0.85
LIMS1-204ENST00000409441 C14orf178Q8N769 122 aaPredicted RBP9.74□□□□□ -0.85
LIMS1-204ENST00000409441 C9orf85Q96MD7 179 aa9.74□□□□□ -0.85
LIMS1-204ENST00000409441 C1QTNF4Q9BXJ3 329 aa9.74□□□□□ -0.85
LIMS1-204ENST00000409441 TRAV12-2A0A075B6T6 113 aa9.73□□□□□ -0.85
LIMS1-204ENST00000409441 IGHV1OR15-1A0A075B7D0 117 aa9.73□□□□□ -0.85
LIMS1-204ENST00000409441 IGHV3-16A0A0C4DH30 117 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms