RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 SMIM2Q9BVW6 85 aa18.51■□□□□ 0.55
SHOX2-201ENST00000389589 CRLF1O75462 422 aa18.5■□□□□ 0.55
SHOX2-201ENST00000389589 INSP01308 110 aa18.5■□□□□ 0.55
SHOX2-201ENST00000389589 SUMO2P61956 95 aaKnown RBP18.5■□□□□ 0.55
SHOX2-201ENST00000389589 LINC00467Q9BRT7 94 aa18.5■□□□□ 0.55
SHOX2-201ENST00000389589 LAGE3Q14657 143 aa18.5■□□□□ 0.55
SHOX2-201ENST00000389589 MIEN1Q9BRT3 115 aa18.5■□□□□ 0.55
SHOX2-201ENST00000389589 C14orf144Q96I85 54 aa18.48■□□□□ 0.55
SHOX2-201ENST00000389589 FAM110AQ9BQ89 295 aa18.48■□□□□ 0.55
SHOX2-201ENST00000389589 JPT2Q9H910 190 aa18.48■□□□□ 0.55
SHOX2-201ENST00000389589 H0Y8G0 127 aa18.48■□□□□ 0.55
SHOX2-201ENST00000389589 K7EMI3 77 aa18.48■□□□□ 0.55
SHOX2-201ENST00000389589 IFI27L1Q96BM0 104 aa18.48■□□□□ 0.55
SHOX2-201ENST00000389589 TRPT1Q86TN4 253 aaKnown RBP18.47■□□□□ 0.55
SHOX2-201ENST00000389589 RPL39LQ96EH5 51 aaKnown RBP18.47■□□□□ 0.55
SHOX2-201ENST00000389589 A0A087WWL8 130 aa18.46■□□□□ 0.55
SHOX2-201ENST00000389589 ZNF876PQ49A33 203 aa18.46■□□□□ 0.55
SHOX2-201ENST00000389589 TMEM158Q8WZ71 300 aa18.46■□□□□ 0.55
SHOX2-201ENST00000389589 PF4P02776 101 aa18.45■□□□□ 0.54
SHOX2-201ENST00000389589 HIVEP1P15822 2718 aa18.45■□□□□ 0.54
SHOX2-201ENST00000389589 HTN1P15515 57 aa18.45■□□□□ 0.54
SHOX2-201ENST00000389589 NUTF2P61970 127 aaKnown RBP18.45■□□□□ 0.54
SHOX2-201ENST00000389589 ZNF415Q09FC8 603 aa18.45■□□□□ 0.54
SHOX2-201ENST00000389589 SUMO4Q6EEV6 95 aa18.45■□□□□ 0.54
SHOX2-201ENST00000389589 LINC01587Q99440 93 aa18.45■□□□□ 0.54
SHOX2-201ENST00000389589 F5H697 171 aa18.44■□□□□ 0.54
SHOX2-201ENST00000389589 RPL32P62910 135 aaKnown RBP18.44■□□□□ 0.54
SHOX2-201ENST00000389589 LGALS9BQ3B8N2 356 aa18.44■□□□□ 0.54
SHOX2-201ENST00000389589 LGALS9CQ6DKI2 356 aa18.44■□□□□ 0.54
SHOX2-201ENST00000389589 FN1P02751 2386 aaKnown RBP18.44■□□□□ 0.54
SHOX2-201ENST00000389589 TCAPO15273 167 aa18.43■□□□□ 0.54
SHOX2-201ENST00000389589 BEAN1Q3B7T3 259 aa18.43■□□□□ 0.54
SHOX2-201ENST00000389589 MAJINQ3KP22 176 aa18.43■□□□□ 0.54
SHOX2-201ENST00000389589 ORMDL2Q53FV1 153 aa18.43■□□□□ 0.54
SHOX2-201ENST00000389589 CRYGDP07320 174 aa18.43■□□□□ 0.54
SHOX2-201ENST00000389589 PIK3CD-AS1Q5SR53 167 aa18.43■□□□□ 0.54
SHOX2-201ENST00000389589 PTH2Q96A98 100 aa18.43■□□□□ 0.54
SHOX2-201ENST00000389589 FAM74A4Q5TZK3 123 aa18.42■□□□□ 0.54
SHOX2-201ENST00000389589 ST20Q9HBF5 79 aa18.42■□□□□ 0.54
SHOX2-201ENST00000389589 HSBP1L1C9JCN9 74 aa18.42■□□□□ 0.54
SHOX2-201ENST00000389589 IGLC3P0DOY3 106 aa18.42■□□□□ 0.54
SHOX2-201ENST00000389589 LINC00482Q8N8I6 264 aa18.42■□□□□ 0.54
SHOX2-201ENST00000389589 MCRIP2Q9BUT9 160 aaKnown RBP18.42■□□□□ 0.54
SHOX2-201ENST00000389589 UQCR10Q9UDW1 63 aa18.42■□□□□ 0.54
SHOX2-201ENST00000389589 IGLL1P15814 213 aa18.41■□□□□ 0.54
SHOX2-201ENST00000389589 C2CD3Q4AC94 2353 aa18.41■□□□□ 0.54
SHOX2-201ENST00000389589 M0R2P5 195 aa18.4■□□□□ 0.54
SHOX2-201ENST00000389589 ATP5LO75964 103 aa18.4■□□□□ 0.54
SHOX2-201ENST00000389589 XCL2Q9UBD3 114 aa18.4■□□□□ 0.54
SHOX2-201ENST00000389589 NUDT3O95989 172 aa18.4■□□□□ 0.54
SHOX2-201ENST00000389589 C18orf15Q96N68 181 aa18.4■□□□□ 0.54
SHOX2-201ENST00000389589 ZNF56Q15929 161 aa18.39■□□□□ 0.53
SHOX2-201ENST00000389589 CSTL1Q9H114 145 aa18.39■□□□□ 0.53
SHOX2-201ENST00000389589 CTAG1AP78358 180 aa18.38■□□□□ 0.53
SHOX2-201ENST00000389589 PMCHL2Q9BQD1 86 aa18.38■□□□□ 0.53
SHOX2-201ENST00000389589 SPXQ9BT56 116 aa18.38■□□□□ 0.53
SHOX2-201ENST00000389589 GOLT1BQ9Y3E0 138 aa18.38■□□□□ 0.53
SHOX2-201ENST00000389589 TRBV6-5A0A0K0K1A5 114 aa18.38■□□□□ 0.53
SHOX2-201ENST00000389589 TMEM208Q9BTX3 173 aa18.38■□□□□ 0.53
SHOX2-201ENST00000389589 C11orf72Q8NBR9 251 aa18.37■□□□□ 0.53
SHOX2-201ENST00000389589 C19orf73Q9NVV2 129 aa18.37■□□□□ 0.53
SHOX2-201ENST00000389589 hDV102S1A0JD36 115 aa18.36■□□□□ 0.53
SHOX2-201ENST00000389589 A8MWV9 139 aa18.36■□□□□ 0.53
SHOX2-201ENST00000389589 M0QY20 66 aa18.36■□□□□ 0.53
SHOX2-201ENST00000389589 POLR2KP53803 58 aaKnown RBP18.36■□□□□ 0.53
SHOX2-201ENST00000389589 VCYO14598 125 aa18.35■□□□□ 0.53
SHOX2-201ENST00000389589 C1orf158Q8N1D5 194 aa18.35■□□□□ 0.53
SHOX2-201ENST00000389589 PRM2P04554 102 aa18.34■□□□□ 0.53
SHOX2-201ENST00000389589 G0S2P27469 103 aa18.34■□□□□ 0.53
SHOX2-201ENST00000389589 MRPL52Q86TS9 123 aaKnown RBP18.34■□□□□ 0.53
SHOX2-201ENST00000389589 PRSS1P07477 247 aa18.34■□□□□ 0.53
SHOX2-201ENST00000389589 TOMM6Q96B49 74 aa18.34■□□□□ 0.53
SHOX2-201ENST00000389589 EDA2RQ9HAV5 297 aa18.34■□□□□ 0.53
SHOX2-201ENST00000389589 H7C1H1 209 aa18.32■□□□□ 0.52
SHOX2-201ENST00000389589 LBHQ53QV2 105 aaPredicted RBP18.32■□□□□ 0.52
SHOX2-201ENST00000389589 KIR2DL4Q99706 377 aa18.32■□□□□ 0.52
SHOX2-201ENST00000389589 SDHAF1A6NFY7 115 aa18.32■□□□□ 0.52
SHOX2-201ENST00000389589 INSL3P51460 131 aa18.32■□□□□ 0.52
SHOX2-201ENST00000389589 Q6ZN92 141 aa18.32■□□□□ 0.52
SHOX2-201ENST00000389589 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP18.32■□□□□ 0.52
SHOX2-201ENST00000389589 TRBV27A0A0K0K1C4 114 aa18.31■□□□□ 0.52
SHOX2-201ENST00000389589 LINC01549A6NIU2 74 aa18.31■□□□□ 0.52
SHOX2-201ENST00000389589 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP18.3■□□□□ 0.52
SHOX2-201ENST00000389589 M0R143 59 aa18.3■□□□□ 0.52
SHOX2-201ENST00000389589 ODF1Q14990 250 aa18.3■□□□□ 0.52
SHOX2-201ENST00000389589 MORN3Q6PF18 240 aaPredicted RBP18.3■□□□□ 0.52
SHOX2-201ENST00000389589 C1QTNF4Q9BXJ3 329 aa18.3■□□□□ 0.52
SHOX2-201ENST00000389589 NACAE9PAV3 2078 aa18.3■□□□□ 0.52
SHOX2-201ENST00000389589 HNRNPA3P51991 378 aaKnown RBP18.29■□□□□ 0.52
SHOX2-201ENST00000389589 CITED1Q99966 193 aa18.29■□□□□ 0.52
SHOX2-201ENST00000389589 WFDC10AQ9H1F0 79 aa18.29■□□□□ 0.52
SHOX2-201ENST00000389589 UFSP1Q6NVU6 142 aa18.29■□□□□ 0.52
SHOX2-201ENST00000389589 C2orf66Q6UXQ4 117 aa18.29■□□□□ 0.52
SHOX2-201ENST00000389589 SCGB3A1Q96QR1 104 aa18.29■□□□□ 0.52
SHOX2-201ENST00000389589 IGHV3OR16-12A0A075B7B8 117 aa18.28■□□□□ 0.52
SHOX2-201ENST00000389589 RHODO00212 210 aa18.28■□□□□ 0.52
SHOX2-201ENST00000389589 DKK2Q9UBU2 259 aa18.28■□□□□ 0.52
SHOX2-201ENST00000389589 AZU1P20160 251 aa18.27■□□□□ 0.52
SHOX2-201ENST00000389589 C9orf66Q5T8R8 295 aa18.27■□□□□ 0.52
SHOX2-201ENST00000389589 NEGR1Q7Z3B1 354 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms