RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 TSHBP01222 138 aa18.88■□□□□ 0.61
C9orf40-201ENST00000376854 ZNF688P0C7X2 276 aa18.88■□□□□ 0.61
C9orf40-201ENST00000376854 ZNF580Q9UK33 172 aa18.88■□□□□ 0.61
C9orf40-201ENST00000376854 ZNF815PA8K554 130 aa18.87■□□□□ 0.61
C9orf40-201ENST00000376854 VCYO14598 125 aa18.86■□□□□ 0.61
C9orf40-201ENST00000376854 RPL24P83731 157 aaKnown RBP18.86■□□□□ 0.61
C9orf40-201ENST00000376854 C10orf99Q6UWK7 81 aa18.86■□□□□ 0.61
C9orf40-201ENST00000376854 KIR2DL4Q99706 377 aa18.86■□□□□ 0.61
C9orf40-201ENST00000376854 AGRNO00468 2067 aa18.86■□□□□ 0.61
C9orf40-201ENST00000376854 IGIPA6NJ69 53 aa18.86■□□□□ 0.61
C9orf40-201ENST00000376854 A0A1B0GWB2 263 aa18.85■□□□□ 0.61
C9orf40-201ENST00000376854 IGHV4-59P01825 116 aa18.85■□□□□ 0.61
C9orf40-201ENST00000376854 LINC01549A6NIU2 74 aa18.85■□□□□ 0.61
C9orf40-201ENST00000376854 RRN3P1Q2M238 152 aa18.85■□□□□ 0.61
C9orf40-201ENST00000376854 IGLV4-69A0A075B6H9 119 aa18.84■□□□□ 0.61
C9orf40-201ENST00000376854 IGKV3-20P01619 116 aa18.84■□□□□ 0.61
C9orf40-201ENST00000376854 RPL39P62891 51 aaKnown RBP18.84■□□□□ 0.61
C9orf40-201ENST00000376854 CD300EQ496F6 205 aaPredicted RBP18.84■□□□□ 0.61
C9orf40-201ENST00000376854 TRAV12-2A0A075B6T6 113 aa18.84■□□□□ 0.61
C9orf40-201ENST00000376854 SDHAF1A6NFY7 115 aa18.84■□□□□ 0.61
C9orf40-201ENST00000376854 C11orf86A6NJI1 115 aa18.84■□□□□ 0.61
C9orf40-201ENST00000376854 COX6B1P14854 86 aa18.84■□□□□ 0.61
C9orf40-201ENST00000376854 DEFB112Q30KQ8 113 aa18.84■□□□□ 0.61
C9orf40-201ENST00000376854 FAM74A4Q5TZK3 123 aa18.84■□□□□ 0.61
C9orf40-201ENST00000376854 SCGB1D4Q6XE38 83 aa18.84■□□□□ 0.61
C9orf40-201ENST00000376854 IGHV3-16A0A0C4DH30 117 aa18.83■□□□□ 0.61
C9orf40-201ENST00000376854 PRB1P04280 392 aa18.83■□□□□ 0.61
C9orf40-201ENST00000376854 EMP1P54849 157 aa18.83■□□□□ 0.61
C9orf40-201ENST00000376854 PMVKQ15126 192 aa18.83■□□□□ 0.61
C9orf40-201ENST00000376854 ODF3Q96PU9 254 aa18.83■□□□□ 0.61
C9orf40-201ENST00000376854 USP24Q9UPU5 2620 aa18.83■□□□□ 0.61
C9orf40-201ENST00000376854 ZNF462Q96JM2 2506 aa18.83■□□□□ 0.6
C9orf40-201ENST00000376854 LGALS9O00182 355 aa18.83■□□□□ 0.6
C9orf40-201ENST00000376854 SNRPD3P62318 126 aaKnown RBP18.83■□□□□ 0.6
C9orf40-201ENST00000376854 C9orf85Q96MD7 179 aa18.83■□□□□ 0.6
C9orf40-201ENST00000376854 FAM208BQ5VWN6 2430 aa18.82■□□□□ 0.6
C9orf40-201ENST00000376854 A0A0J9YX75 114 aa18.82■□□□□ 0.6
C9orf40-201ENST00000376854 TEX48A0A1B0GUV7 120 aa18.82■□□□□ 0.6
C9orf40-201ENST00000376854 GATA3P23771 443 aa18.82■□□□□ 0.6
C9orf40-201ENST00000376854 MAPK1IP1LQ8NDC0 245 aa18.82■□□□□ 0.6
C9orf40-201ENST00000376854 PLEKHB2Q96CS7 222 aa18.82■□□□□ 0.6
C9orf40-201ENST00000376854 TMEM141Q96I45 108 aa18.82■□□□□ 0.6
C9orf40-201ENST00000376854 MDFICQ9P1T7 246 aa18.82■□□□□ 0.6
C9orf40-201ENST00000376854 ANKRD17O75179 2603 aaKnown RBP18.82■□□□□ 0.6
C9orf40-201ENST00000376854 F8W1H4 67 aa18.82■□□□□ 0.6
C9orf40-201ENST00000376854 PAPPA-AS1Q5QFB9 102 aa18.82■□□□□ 0.6
C9orf40-201ENST00000376854 LRRK2Q5S007 2527 aa18.81■□□□□ 0.6
C9orf40-201ENST00000376854 H3BMG7 143 aa18.81■□□□□ 0.6
C9orf40-201ENST00000376854 KLHL30-AS1Q8NEE0 82 aa18.81■□□□□ 0.6
C9orf40-201ENST00000376854 TRBV27A0A0K0K1C4 114 aa18.8■□□□□ 0.6
C9orf40-201ENST00000376854 HOXA3O43365 443 aaPredicted RBP18.8■□□□□ 0.6
C9orf40-201ENST00000376854 TIMM17AQ99595 171 aa18.8■□□□□ 0.6
C9orf40-201ENST00000376854 HERVK_113P61574 105 aa18.8■□□□□ 0.6
C9orf40-201ENST00000376854 TRBV6-5A0A0K0K1A5 114 aa18.79■□□□□ 0.6
C9orf40-201ENST00000376854 AMTNQ6UX39 209 aa18.79■□□□□ 0.6
C9orf40-201ENST00000376854 Q8N1Y9 231 aa18.79■□□□□ 0.6
C9orf40-201ENST00000376854 SYT8Q8NBV8 401 aa18.79■□□□□ 0.6
C9orf40-201ENST00000376854 K7EQG2 157 aa18.79■□□□□ 0.6
C9orf40-201ENST00000376854 WFDC2Q14508 124 aa18.79■□□□□ 0.6
C9orf40-201ENST00000376854 SRSF9Q13242 221 aaKnown RBP eCLIP18.78■□□□□ 0.6
C9orf40-201ENST00000376854 ZNF56Q15929 161 aa18.78■□□□□ 0.6
C9orf40-201ENST00000376854 MORN3Q6PF18 240 aaPredicted RBP18.78■□□□□ 0.6
C9orf40-201ENST00000376854 ZNF256Q9Y2P7 627 aaPredicted RBP18.78■□□□□ 0.6
C9orf40-201ENST00000376854 TMEM89A2RUT3 159 aa18.77■□□□□ 0.6
C9orf40-201ENST00000376854 TMEM238LA0A1B0GVL6 79 aa18.77■□□□□ 0.59
C9orf40-201ENST00000376854 A6NJY4 79 aa18.77■□□□□ 0.59
C9orf40-201ENST00000376854 SYNJ2BPP57105 145 aa18.77■□□□□ 0.59
C9orf40-201ENST00000376854 SPINK13Q1W4C9 94 aa18.77■□□□□ 0.59
C9orf40-201ENST00000376854 IGHV1OR15-1A0A075B7D0 117 aa18.76■□□□□ 0.59
C9orf40-201ENST00000376854 DSCR9P59020 149 aa18.76■□□□□ 0.59
C9orf40-201ENST00000376854 M0QY20 66 aa18.75■□□□□ 0.59
C9orf40-201ENST00000376854 PGPEP1Q9NXJ5 209 aa18.75■□□□□ 0.59
C9orf40-201ENST00000376854 LINC01356Q8N9X3 169 aa18.75■□□□□ 0.59
C9orf40-201ENST00000376854 SPANXB1Q9NS25 103 aaPredicted RBP18.74■□□□□ 0.59
C9orf40-201ENST00000376854 A0A096LNT2 108 aa18.74■□□□□ 0.59
C9orf40-201ENST00000376854 TMEM170BQ5T4T1 132 aa18.74■□□□□ 0.59
C9orf40-201ENST00000376854 MRPL16Q9NX20 251 aaKnown RBP18.74■□□□□ 0.59
C9orf40-201ENST00000376854 MXRA5Q9NR99 2828 aa18.74■□□□□ 0.59
C9orf40-201ENST00000376854 ZNF876PQ49A33 203 aa18.73■□□□□ 0.59
C9orf40-201ENST00000376854 GAGE13Q4V321 117 aa18.73■□□□□ 0.59
C9orf40-201ENST00000376854 ZNRF2Q8NHG8 242 aa18.73■□□□□ 0.59
C9orf40-201ENST00000376854 A0A0J9YY99 117 aa18.72■□□□□ 0.59
C9orf40-201ENST00000376854 UBE2D1P51668 147 aa18.72■□□□□ 0.59
C9orf40-201ENST00000376854 TRPT1Q86TN4 253 aaKnown RBP18.72■□□□□ 0.59
C9orf40-201ENST00000376854 DUX5Q96PT3 197 aa18.72■□□□□ 0.59
C9orf40-201ENST00000376854 TGFAP01135 160 aa18.71■□□□□ 0.58
C9orf40-201ENST00000376854 TSPEAR-AS2P59090 65 aa18.71■□□□□ 0.58
C9orf40-201ENST00000376854 NSUN5P1Q3KNT7 163 aa18.71■□□□□ 0.58
C9orf40-201ENST00000376854 MTURNQ8N3F0 131 aa18.71■□□□□ 0.58
C9orf40-201ENST00000376854 BBC3Q96PG8 261 aaPredicted RBP18.71■□□□□ 0.58
C9orf40-201ENST00000376854 RHOHQ15669 191 aa18.7■□□□□ 0.58
C9orf40-201ENST00000376854 PRO0461Q9UI25 63 aa18.7■□□□□ 0.58
C9orf40-201ENST00000376854 DOPEY2Q9Y3R5 2298 aa18.7■□□□□ 0.58
C9orf40-201ENST00000376854 PTPN13Q12923 2485 aa18.7■□□□□ 0.58
C9orf40-201ENST00000376854 UBR5O95071 2799 aaPredicted RBP18.7■□□□□ 0.58
C9orf40-201ENST00000376854 ETDBQ3ZM63 59 aa18.69■□□□□ 0.58
C9orf40-201ENST00000376854 SH2D6Q7Z4S9 175 aa18.69■□□□□ 0.58
C9orf40-201ENST00000376854 ABCA12Q86UK0 2595 aa18.68■□□□□ 0.58
C9orf40-201ENST00000376854 OPRPNQ99935 248 aaPredicted RBP18.68■□□□□ 0.58
C9orf40-201ENST00000376854 HOXD3P31249 432 aaPredicted RBP18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms